mRNA_H-canaliculatus_F_contig11257.1135.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig11257.1135.1
Unique NamemRNA_H-canaliculatus_F_contig11257.1135.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
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BLAST of mRNA_H-canaliculatus_F_contig11257.1135.1 vs. uniprot
Match: D8LDR2_ECTSI (Cas1_AcylT domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LDR2_ECTSI)

HSP 1 Score: 222 bits (566), Expect = 5.790e-65
Identity = 118/130 (90.77%), Postives = 123/130 (94.62%), Query Frame = 1 
Query:    4 LEKLVYNQKNAYFGVAVPVLTYIYVRNLTPLLRTRYLEPLHSLGKITLETYLMQHHIWLTSNAKTLLVVVPGHDKLNMVVVTVSYVLVSRELYRLTMSLRGMCLPDDLSACLKNLAGIATAVAAATAVAK 393
            LEKLVYNQKNAYFGVA+PVLTYIYVRNLTPL+RTRYLEPLHSLGKITLETYLMQHHIWLTSNAKTLLVVVPG  KLNMV+VTV YVLVSRELYRLTMSLRGMCLPD+LSACL+NLAGIA  VAA  AVAK
Sbjct:  380 LEKLVYNQKNAYFGVAIPVLTYIYVRNLTPLMRTRYLEPLHSLGKITLETYLMQHHIWLTSNAKTLLVVVPGSPKLNMVIVTVCYVLVSRELYRLTMSLRGMCLPDELSACLRNLAGIACTVAACVAVAK 509
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BLAST of mRNA_H-canaliculatus_F_contig11257.1135.1 vs. uniprot
Match: A0A835YWF0_9STRA (10 TM acyl transferase domain found in Cas1p-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YWF0_9STRA)

HSP 1 Score: 169 bits (427), Expect = 4.960e-46
Identity = 86/129 (66.67%), Postives = 107/129 (82.95%), Query Frame = 1 
Query:   10 KLVYNQKNAYFGVAVPVLTYIYVRNLTPLLRTRYLEPLHSLGKITLETYLMQHHIWLTSNAKTLLVVVPGHDKLNMVVVTVSYVLVSRELYRLTMSLRGMCLPDDLSACLKNLAGIATAVAAATAVAKV 396
            KL YN  NAY+GVA+P+LTY+++RNL+P LR  Y+EPLHS+GKITLETYLMQHH+WLTSNAKT+L +VP   +LNMVV T  YVL+S+ELYRLTMSLRGM LPD  +ACL+NLAG+   ++AA  +A V
Sbjct:  355 KLQYNTNNAYYGVAIPLLTYVFLRNLSPTLRIHYVEPLHSIGKITLETYLMQHHVWLTSNAKTVLTLVPDSPRLNMVVTTTLYVLLSKELYRLTMSLRGMLLPDAKAACLRNLAGLVAVLSAALGLAAV 483
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BLAST of mRNA_H-canaliculatus_F_contig11257.1135.1 vs. uniprot
Match: A0A836C8X4_9STRA (10 TM acyl transferase domain found in Cas1p-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C8X4_9STRA)

HSP 1 Score: 167 bits (423), Expect = 1.730e-45
Identity = 85/116 (73.28%), Postives = 98/116 (84.48%), Query Frame = 1 
Query:   10 KLVYNQKNAYFGVAVPVLTYIYVRNLTPLLRTRYLEPLHSLGKITLETYLMQHHIWLTSNAKTLLVVVPGHDKLNMVVVTVSYVLVSRELYRLTMSLRGMCLPDDLSACLKNLAGI 357
            KL YN  NAYFGVA+P+LTYI++RNL+P LR  Y+EPLHS+GK TLETYLMQHH+WLTSNAKT L +VPG  +LNM+V  V YVLVSRELYRLTMSLRGM LPD  +ACL+NL GI
Sbjct:  361 KLQYNSSNAYFGVAIPLLTYIFLRNLSPALRGYYVEPLHSIGKTTLETYLMQHHVWLTSNAKTALTLVPGSPRLNMIVAGVLYVLVSRELYRLTMSLRGMLLPDARAACLRNLGGI 476
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BLAST of mRNA_H-canaliculatus_F_contig11257.1135.1 vs. uniprot
Match: A0A7S2WUZ9_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2WUZ9_9STRA)

HSP 1 Score: 146 bits (369), Expect = 3.310e-38
Identity = 74/119 (62.18%), Postives = 96/119 (80.67%), Query Frame = 1 
Query:    4 LEKLVYNQKNAYFGVAVPVLTYIYVRNLTPLLRTRYLEPLHSLGKITLETYLMQHHIWLTSNAKTLLVVVPGHDKLNMVVVTVSYVLVSRELYRLTMSLRGMCLPDDLSACLKNLAGIA 360
            L KL YN  NAYF   VP+L Y+++RNLTP LR+ YL PLHS+GK TLETYLMQHHIWLTSNAKTL+ ++PG+ K+N ++V+  ++++S+ELYRLTMSLRGM LPD  +AC +N  G+A
Sbjct:  369 LPKLDYNMTNAYFAF-VPLLVYVFLRNLTPGLRSYYLGPLHSIGKTTLETYLMQHHIWLTSNAKTLVTILPGYPKINFLLVSCVFIVLSQELYRLTMSLRGMLLPDSFAACARNSLGVA 486
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BLAST of mRNA_H-canaliculatus_F_contig11257.1135.1 vs. uniprot
Match: B8C5R8_THAPS (Cas1_AcylT domain-containing protein (Fragment) n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8C5R8_THAPS)

HSP 1 Score: 140 bits (353), Expect = 2.100e-37
Identity = 69/118 (58.47%), Postives = 98/118 (83.05%), Query Frame = 1 
Query:    4 LEKLVYNQKNAYFGVAVPVLTYIYVRNLTPLLRTRYLEPLHSLGKITLETYLMQHHIWLTSNAKTLLVVVPGHDKLNMVVVTVSYVLVSRELYRLTMSLRGMCLPDDLSACLKNLAGI 357
            ++K+ YN  N YFG  +P++TYIY+RNLTP +R+   E LH +GK TLETYLMQHHIWL+SN+KT+LV +PG  ++NM++VTV YV++SR+LY+LT+SLRGM LP+D + C++++AGI
Sbjct:  296 MDKIQYNSTNPYFGF-IPLITYIYLRNLTPQMRSYSSELLHEIGKTTLETYLMQHHIWLSSNSKTVLVFLPGWPRVNMMLVTVCYVVLSRKLYKLTLSLRGMLLPEDRTMCIRSVAGI 412
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BLAST of mRNA_H-canaliculatus_F_contig11257.1135.1 vs. uniprot
Match: A0A1E7FDC2_9STRA (Cas1p-domain-containing protein (Fragment) n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7FDC2_9STRA)

HSP 1 Score: 139 bits (349), Expect = 6.240e-37
Identity = 72/116 (62.07%), Postives = 90/116 (77.59%), Query Frame = 1 
Query:   10 KLVYNQKNAYFGVAVPVLTYIYVRNLTPLLRTRYLEPLHSLGKITLETYLMQHHIWLTSNAKTLLVVVPGHDKLNMVVVTVSYVLVSRELYRLTMSLRGMCLPDDLSACLKNLAGI 357
            K  YNQ NAY+G  +P+  YIY RNLTP LR   L+ LH +GK TLETYLMQHHIWLTS+AK+LL ++PG  K+N +VV+V YV++SR LY+LT+ LRGM LPD+  AC KNLAG+
Sbjct:  282 KFDYNQTNAYYGF-IPLTAYIYFRNLTPFLRNHSLDLLHQIGKTTLETYLMQHHIWLTSDAKSLLTLIPGWPKVNFLVVSVLYVVMSRRLYQLTLFLRGMVLPDNRDACFKNLAGM 396
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BLAST of mRNA_H-canaliculatus_F_contig11257.1135.1 vs. uniprot
Match: A0A448YYA4_9STRA (Cas1_AcylT domain-containing protein n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448YYA4_9STRA)

HSP 1 Score: 142 bits (358), Expect = 1.010e-36
Identity = 74/121 (61.16%), Postives = 93/121 (76.86%), Query Frame = 1 
Query:   10 KLVYNQKNAYFGVAVPVLTYIYVRNLTPLLRTRYLEPLHSLGKITLETYLMQHHIWLTSNAKTLLVVVPGHDKLNMVVVTVSYVLVSRELYRLTMSLRGMCLPDDLSACLKNLAGIATAVA 372
            K  YNQ NAY+G+ +P++TYIY RNLTP LR   L+ LH +GK TLETYLMQHHIWLTS+AK+LL +VPG  K+N ++V+V YV  SR LY+LT+ LRGM LPDD SAC +NL G+   +A
Sbjct:  397 KFDYNQTNAYYGI-IPLITYIYFRNLTPFLRNHSLDLLHQIGKTTLETYLMQHHIWLTSDAKSLLTLVPGWPKVNFLLVSVIYVTXSRRLYQLTLYLRGMMLPDDRSACFRNLGGMIAIIA 516
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BLAST of mRNA_H-canaliculatus_F_contig11257.1135.1 vs. uniprot
Match: A0A1Z5KB21_FISSO (Cas1_AcylT domain-containing protein n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5KB21_FISSO)

HSP 1 Score: 139 bits (351), Expect = 8.870e-36
Identity = 77/127 (60.63%), Postives = 94/127 (74.02%), Query Frame = 1 
Query:   10 KLVYNQKNAYFGVAVPVLTYIYVRNLTPLLRTRYLEPLHSLGKITLETYLMQHHIWLTSNAKTLLVVVPGHDKLNMVVVTVSYVLVSRELYRLTMSLRGMCLPDDLSACLKNLAGIATAVAAATAVA 390
            K  YNQ NAYF   +PV TYI++RNLTP LR   LE LH +GK TLETYLMQHHIWLTSNAKTLL+++PG  K N +VV+V YV++SR LY LT+ LRGM LP+D + C  NL G+  A+ A  A+A
Sbjct:  413 KFEYNQTNAYFA-CIPVYTYIFLRNLTPWLRENTLELLHQIGKTTLETYLMQHHIWLTSNAKTLLILIPGWPKCNFLVVSVIYVVLSRRLYTLTLFLRGMLLPNDWNQCRTNLIGLMGAMGACHAIA 538
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BLAST of mRNA_H-canaliculatus_F_contig11257.1135.1 vs. uniprot
Match: A0A7S2DGG6_9STRA (Hypothetical protein (Fragment) n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2DGG6_9STRA)

HSP 1 Score: 127 bits (320), Expect = 1.060e-34
Identity = 68/117 (58.12%), Postives = 89/117 (76.07%), Query Frame = 1 
Query:    1 QLEKLVYNQKNAYFGVAVPVLTYIYVRNLTPLLRTRYLEPLHSLGKITLETYLMQHHIWLTSNAKTLLVVVPGHDKLNMVVVTVSYVLVSRELYRLTMSLRGMCLPDDLSACLKNLA 351
            QL KL YN  NA+F V +P+L Y+++RN+ P+LR  +   LH +GK TLETYL+QHH+WL+SNAKTLLV++PG  K N +VVT+ YV+ S+E+YRLT+SLRGM LPDD    L  LA
Sbjct:   73 QLPKLEYNATNAHFAV-LPLLCYVFLRNVHPVLRRWHSPVLHEIGKSTLETYLLQHHLWLSSNAKTLLVLIPGSPKCNFLVVTLVYVVASKEMYRLTLSLRGMFLPDDGKGILAKLA 188
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BLAST of mRNA_H-canaliculatus_F_contig11257.1135.1 vs. uniprot
Match: A0A7S2ES70_TRICV (Hypothetical protein (Fragment) n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S2ES70_TRICV)

HSP 1 Score: 130 bits (326), Expect = 1.280e-34
Identity = 66/122 (54.10%), Postives = 92/122 (75.41%), Query Frame = 1 
Query:   10 KLVYNQKNAYFGVAVPVLTYIYVRNLTPLLRTRYLEPLHSLGKITLETYLMQHHIWLTSNAKTLLVVVPGHDKLNMVVVTVSYVLVSRELYRLTMSLRGMCLPDDLSACLKNLAGIATAVAA 375
            K+ YN  N+YFG  +P++ YIY RNLTP LR+  L+ LH +GK TLETYLMQHHIWLTS+AK+LL ++PG  K NM++VT+ Y   SR LY+LT+ LRGM LPD+++ C+++L+ +   + A
Sbjct:   27 KIEYNATNSYFGF-IPMIAYIYFRNLTPKLRSYSLDLLHQIGKTTLETYLMQHHIWLTSDAKSLLTLIPGWPKANMLIVTLIYFYTSRRLYKLTLFLRGMLLPDNITFCVRSLSSMTIVIGA 147
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig11257.1135.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LDR2_ECTSI5.790e-6590.77Cas1_AcylT domain-containing protein n=2 Tax=Ectoc... [more]
A0A835YWF0_9STRA4.960e-4666.6710 TM acyl transferase domain found in Cas1p-domai... [more]
A0A836C8X4_9STRA1.730e-4573.2810 TM acyl transferase domain found in Cas1p-domai... [more]
A0A7S2WUZ9_9STRA3.310e-3862.18Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
B8C5R8_THAPS2.100e-3758.47Cas1_AcylT domain-containing protein (Fragment) n=... [more]
A0A1E7FDC2_9STRA6.240e-3762.07Cas1p-domain-containing protein (Fragment) n=1 Tax... [more]
A0A448YYA4_9STRA1.010e-3661.16Cas1_AcylT domain-containing protein n=1 Tax=Pseud... [more]
A0A1Z5KB21_FISSO8.870e-3660.63Cas1_AcylT domain-containing protein n=2 Tax=Fistu... [more]
A0A7S2DGG6_9STRA1.060e-3458.12Hypothetical protein (Fragment) n=1 Tax=Dictyocha ... [more]
A0A7S2ES70_TRICV1.280e-3454.10Hypothetical protein (Fragment) n=1 Tax=Trieres ch... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig11257contigH-canaliculatus_F_contig11257:3840..4235 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score224.6
Seed ortholog evalue2.8e-56
Seed eggNOG ortholog2880.D8LDR2
KEGG koko:K03377
GOsGO:0000271,GO:0001101,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005783,GO:0005794,GO:0005975,GO:0005976,GO:0006073,GO:0006950,GO:0006952,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009605,GO:0009607,GO:0009620,GO:0009719,GO:0009725,GO:0009737,GO:0009832,GO:0009834,GO:0009987,GO:0010033,GO:0010383,GO:0010410,GO:0010411,GO:0012505,GO:0016051,GO:0033692,GO:0033993,GO:0034637,GO:0034645,GO:0042221,GO:0042546,GO:0043170,GO:0043207,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043412,GO:0044036,GO:0044038,GO:0044042,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044262,GO:0044264,GO:0044424,GO:0044444,GO:0044464,GO:0045491,GO:0045492,GO:0050832,GO:0050896,GO:0051704,GO:0051707,GO:0070589,GO:0070592,GO:0071554,GO:0071669,GO:0071704,GO:0071840,GO:0097305,GO:0098542,GO:1901576,GO:1901700,GO:1990937
EggNOG free text desc.N-acetylneuraminate 7-O(or 9-O)-acetyltransferase activity
EggNOG OGsKOG1699@1,KOG1699@2759
Ec32 ortholog descriptionSGNH hydrolase-type esterase domain
Ec32 orthologEc-19_001660.1
EC2.3.1.45
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000
Hectar predicted targeting categoryother localisation
Exons1
Model size396
Cds size396
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928806.9757085-CDS-H-canaliculatus_F_contig11257:3839..42351622928806.9757085-CDS-H-canaliculatus_F_contig11257:3839..4235Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig11257 3840..4235 -
1696845572.2431412-CDS-H-canaliculatus_F_contig11257:3839..42351696845572.2431412-CDS-H-canaliculatus_F_contig11257:3839..4235Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig11257 3840..4235 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig11257.1135.1prot_H-canaliculatus_F_contig11257.1135.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig11257 3840..4235 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig11257.1135.1

>prot_H-canaliculatus_F_contig11257.1135.1 ID=prot_H-canaliculatus_F_contig11257.1135.1|Name=mRNA_H-canaliculatus_F_contig11257.1135.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=132bp
QLEKLVYNQKNAYFGVAVPVLTYIYVRNLTPLLRTRYLEPLHSLGKITLE
TYLMQHHIWLTSNAKTLLVVVPGHDKLNMVVVTVSYVLVSRELYRLTMSL
RGMCLPDDLSACLKNLAGIATAVAAATAVAKV
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mRNA from alignment at H-canaliculatus_F_contig11257:3840..4235-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig11257.1135.1 ID=mRNA_H-canaliculatus_F_contig11257.1135.1|Name=mRNA_H-canaliculatus_F_contig11257.1135.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=396bp|location=Sequence derived from alignment at H-canaliculatus_F_contig11257:3840..4235- (Hapterophycus canaliculatus Oshoro5f female)
CAGCTGGAGAAACTCGTCTACAACCAGAAGAACGCCTACTTCGGCGTCGC
CGTCCCGGTGCTGACCTACATCTACGTGCGCAACCTCACCCCCCTGCTGC
GCACGCGCTACCTGGAGCCCCTGCACTCGCTGGGCAAGATCACCTTGGAG
ACGTACCTCATGCAACACCACATCTGGCTGACGAGCAACGCCAAGACGCT
GCTGGTGGTGGTCCCCGGCCACGACAAGCTGAACATGGTGGTGGTGACCG
TGAGCTACGTCCTGGTCAGCCGCGAGCTGTACCGGCTGACGATGTCTCTC
CGCGGCATGTGCCTCCCGGACGACCTCTCCGCCTGCCTGAAGAACCTGGC
GGGCATCGCGACCGCTGTCGCCGCCGCCACCGCCGTGGCGAAGGTG
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig11257:3840..4235-

>mRNA_H-canaliculatus_F_contig11257.1135.1 ID=mRNA_H-canaliculatus_F_contig11257.1135.1|Name=mRNA_H-canaliculatus_F_contig11257.1135.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=792bp|location=Sequence derived from alignment at H-canaliculatus_F_contig11257:3840..4235- (Hapterophycus canaliculatus Oshoro5f female)
CAGCTGGAGAAACTCGTCTACAACCAGAAGAACGCCTACTTCGGCGTCGC
CGTCCCGGTGCTGACCTACATCTACGTGCGCAACCTCACCCCCCTGCTGC
GCACGCGCTACCTGGAGCCCCTGCACTCGCTGGGCAAGATCACCTTGGAG
ACGTACCTCATGCAACACCACATCTGGCTGACGAGCAACGCCAAGACGCT
GCTGGTGGTGGTCCCCGGCCACGACAAGCTGAACATGGTGGTGGTGACCG
TGAGCTACGTCCTGGTCAGCCGCGAGCTGTACCGGCTGACGATGTCTCTC
CGCGGCATGTGCCTCCCGGACGACCTCTCCGCCTGCCTGAAGAACCTGGC
GGGCATCGCGACCGCTGTCGCCGCCGCCACCGCCGTGGCGAAGGTGCAGC
TGGAGAAACTCGTCTACAACCAGAAGAACGCCTACTTCGGCGTCGCCGTC
CCGGTGCTGACCTACATCTACGTGCGCAACCTCACCCCCCTGCTGCGCAC
GCGCTACCTGGAGCCCCTGCACTCGCTGGGCAAGATCACCTTGGAGACGT
ACCTCATGCAACACCACATCTGGCTGACGAGCAACGCCAAGACGCTGCTG
GTGGTGGTCCCCGGCCACGACAAGCTGAACATGGTGGTGGTGACCGTGAG
CTACGTCCTGGTCAGCCGCGAGCTGTACCGGCTGACGATGTCTCTCCGCG
GCATGTGCCTCCCGGACGACCTCTCCGCCTGCCTGAAGAACCTGGCGGGC
ATCGCGACCGCTGTCGCCGCCGCCACCGCCGTGGCGAAGGTG
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