mRNA_H-canaliculatus_F_contig1125.1128.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig1125.1128.1
Unique NamemRNA_H-canaliculatus_F_contig1125.1128.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig1125.1128.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig1125contigH-canaliculatus_F_contig1125:5341..5667 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size327
Cds size327
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928806.1915584-CDS-H-canaliculatus_F_contig1125:5340..56671622928806.1915584-CDS-H-canaliculatus_F_contig1125:5340..5667Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1125 5341..5667 +
1696845571.9515038-CDS-H-canaliculatus_F_contig1125:5340..56671696845571.9515038-CDS-H-canaliculatus_F_contig1125:5340..5667Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1125 5341..5667 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig1125.1128.1prot_H-canaliculatus_F_contig1125.1128.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig1125 5341..5667 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig1125.1128.1

>prot_H-canaliculatus_F_contig1125.1128.1 ID=prot_H-canaliculatus_F_contig1125.1128.1|Name=mRNA_H-canaliculatus_F_contig1125.1128.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=109bp
CFCRFCSLSSSSSSVAPPITASGAPSSSPSVSTMVFLAFEPFPFFPPLTF
AGAPFVAVGDLVTFVAVAPLSCFLEAAPVDFFVFFAIDGDPAAESSTPLV
SAGMVASQL
back to top

mRNA from alignment at H-canaliculatus_F_contig1125:5341..5667+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig1125.1128.1 ID=mRNA_H-canaliculatus_F_contig1125.1128.1|Name=mRNA_H-canaliculatus_F_contig1125.1128.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=327bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1125:5341..5667+ (Hapterophycus canaliculatus Oshoro5f female)
TGTTTTTGCCGTTTCTGCTCCTTGTCCTCCTCCTCCAGCTCCGTGGCCCC
TCCCATTACGGCCTCGGGCGCACCATCATCATCTCCCTCGGTCTCTACTA
TGGTCTTTCTCGCCTTTGAACCTTTCCCTTTCTTTCCACCCTTGACTTTC
GCCGGCGCCCCTTTCGTTGCTGTCGGTGATCTTGTTACCTTTGTCGCTGT
CGCCCCTTTGTCCTGCTTTTTAGAAGCAGCGCCCGTGGATTTTTTTGTCT
TCTTCGCCATTGATGGTGATCCAGCCGCTGAATCCTCTACCCCCTTGGTA
TCTGCCGGCATGGTTGCTTCCCAGCTG
back to top

Coding sequence (CDS) from alignment at H-canaliculatus_F_contig1125:5341..5667+

>mRNA_H-canaliculatus_F_contig1125.1128.1 ID=mRNA_H-canaliculatus_F_contig1125.1128.1|Name=mRNA_H-canaliculatus_F_contig1125.1128.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=654bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1125:5341..5667+ (Hapterophycus canaliculatus Oshoro5f female)
TGTTTTTGCCGTTTCTGCTCCTTGTCCTCCTCCTCCAGCTCCGTGGCCCC
TCCCATTACGGCCTCGGGCGCACCATCATCATCTCCCTCGGTCTCTACTA
TGGTCTTTCTCGCCTTTGAACCTTTCCCTTTCTTTCCACCCTTGACTTTC
GCCGGCGCCCCTTTCGTTGCTGTCGGTGATCTTGTTACCTTTGTCGCTGT
CGCCCCTTTGTCCTGCTTTTTAGAAGCAGCGCCCGTGGATTTTTTTGTCT
TCTTCGCCATTGATGGTGATCCAGCCGCTGAATCCTCTACCCCCTTGGTA
TCTGCCGGCATGGTTGCTTCCCAGCTGTGTTTTTGCCGTTTCTGCTCCTT
GTCCTCCTCCTCCAGCTCCGTGGCCCCTCCCATTACGGCCTCGGGCGCAC
CATCATCATCTCCCTCGGTCTCTACTATGGTCTTTCTCGCCTTTGAACCT
TTCCCTTTCTTTCCACCCTTGACTTTCGCCGGCGCCCCTTTCGTTGCTGT
CGGTGATCTTGTTACCTTTGTCGCTGTCGCCCCTTTGTCCTGCTTTTTAG
AAGCAGCGCCCGTGGATTTTTTTGTCTTCTTCGCCATTGATGGTGATCCA
GCCGCTGAATCCTCTACCCCCTTGGTATCTGCCGGCATGGTTGCTTCCCA
GCTG
back to top