mRNA_H-canaliculatus_F_contig11248.1123.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig11248.1123.1
Unique NamemRNA_H-canaliculatus_F_contig11248.1123.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig11248.1123.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig11248contigH-canaliculatus_F_contig11248:3723..4236 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size516
Cds size513
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928805.778323-CDS-H-canaliculatus_F_contig11248:3722..42351622928805.778323-CDS-H-canaliculatus_F_contig11248:3722..4235Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig11248 3723..4235 +
1696845571.886977-CDS-H-canaliculatus_F_contig11248:3722..42351696845571.886977-CDS-H-canaliculatus_F_contig11248:3722..4235Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig11248 3723..4235 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig11248.1123.1prot_H-canaliculatus_F_contig11248.1123.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig11248 3723..4235 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig11248.1123.1

>prot_H-canaliculatus_F_contig11248.1123.1 ID=prot_H-canaliculatus_F_contig11248.1123.1|Name=mRNA_H-canaliculatus_F_contig11248.1123.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=171bp
SSLLDQARDGPAPKPDAAEGGATEGAAVAAGAGAAPTAPAAEGAAVAVAA
APGNESEAAALNAPPTPPQQQALQTAGAAAAAAGAGAAGAGAHASPVPSP
SSSSVAAAASAAAATAGVAMAAVGGGAQKGTPSSSEPAPPPPIGGVVAAV
KLGRIFGGAAVVPPKEGIVAE
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mRNA from alignment at H-canaliculatus_F_contig11248:3723..4236+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig11248.1123.1 ID=mRNA_H-canaliculatus_F_contig11248.1123.1|Name=mRNA_H-canaliculatus_F_contig11248.1123.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=514bp|location=Sequence derived from alignment at H-canaliculatus_F_contig11248:3723..4236+ (Hapterophycus canaliculatus Oshoro5f female)
TCGTCCCTCCTCGACCAGGCGCGCGACGGCCCCGCCCCCAAACCTGATGC
TGCGGAAGGAGGAGCGACTGAAGGAGCAGCAGTTGCAGCGGGAGCGGGAG
CAGCGCCGACGGCGCCGGCGGCAGAAGGAGCAGCAGTAGCAGTAGCAGCA
GCGCCGGGCAACGAGAGCGAAGCCGCCGCGCTGAACGCTCCTCCCACCCC
GCCCCAGCAGCAAGCTCTGCAGACAGCAGGAGCAGCGGCGGCGGCGGCGG
GGGCTGGGGCTGCAGGGGCCGGGGCTCACGCCTCTCCTGTTCCTTCCCCC
TCGTCGTCGTCGGTAGCAGCAGCAGCATCAGCGGCAGCGGCAACGGCAGG
CGTAGCAATGGCAGCGGTTGGAGGGGGCGCGCAGAAAGGAACGCCGTCTT
CTTCCGAGCCCGCGCCGCCGCCTCCGATAGGCGGAGTCGTGGCAGCGGTG
AAGCTGGGGAGAATTTTCGGTGGGGCGGCTGTGGTTCCGCCGAAAGAGGG
AATCGTGGCGGAGC
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig11248:3723..4236+

>mRNA_H-canaliculatus_F_contig11248.1123.1 ID=mRNA_H-canaliculatus_F_contig11248.1123.1|Name=mRNA_H-canaliculatus_F_contig11248.1123.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=1026bp|location=Sequence derived from alignment at H-canaliculatus_F_contig11248:3723..4236+ (Hapterophycus canaliculatus Oshoro5f female)
TCGTCCCTCCTCGACCAGGCGCGCGACGGCCCCGCCCCCAAACCTGATGC
TGCGGAAGGAGGAGCGACTGAAGGAGCAGCAGTTGCAGCGGGAGCGGGAG
CAGCGCCGACGGCGCCGGCGGCAGAAGGAGCAGCAGTAGCAGTAGCAGCA
GCGCCGGGCAACGAGAGCGAAGCCGCCGCGCTGAACGCTCCTCCCACCCC
GCCCCAGCAGCAAGCTCTGCAGACAGCAGGAGCAGCGGCGGCGGCGGCGG
GGGCTGGGGCTGCAGGGGCCGGGGCTCACGCCTCTCCTGTTCCTTCCCCC
TCGTCGTCGTCGGTAGCAGCAGCAGCATCAGCGGCAGCGGCAACGGCAGG
CGTAGCAATGGCAGCGGTTGGAGGGGGCGCGCAGAAAGGAACGCCGTCTT
CTTCCGAGCCCGCGCCGCCGCCTCCGATAGGCGGAGTCGTGGCAGCGGTG
AAGCTGGGGAGAATTTTCGGTGGGGCGGCTGTGGTTCCGCCGAAAGAGGG
AATCGTGGCGGAGTCGTCCCTCCTCGACCAGGCGCGCGACGGCCCCGCCC
CCAAACCTGATGCTGCGGAAGGAGGAGCGACTGAAGGAGCAGCAGTTGCA
GCGGGAGCGGGAGCAGCGCCGACGGCGCCGGCGGCAGAAGGAGCAGCAGT
AGCAGTAGCAGCAGCGCCGGGCAACGAGAGCGAAGCCGCCGCGCTGAACG
CTCCTCCCACCCCGCCCCAGCAGCAAGCTCTGCAGACAGCAGGAGCAGCG
GCGGCGGCGGCGGGGGCTGGGGCTGCAGGGGCCGGGGCTCACGCCTCTCC
TGTTCCTTCCCCCTCGTCGTCGTCGGTAGCAGCAGCAGCATCAGCGGCAG
CGGCAACGGCAGGCGTAGCAATGGCAGCGGTTGGAGGGGGCGCGCAGAAA
GGAACGCCGTCTTCTTCCGAGCCCGCGCCGCCGCCTCCGATAGGCGGAGT
CGTGGCAGCGGTGAAGCTGGGGAGAATTTTCGGTGGGGCGGCTGTGGTTC
CGCCGAAAGAGGGAATCGTGGCGGAG
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