mRNA_H-canaliculatus_F_contig11237.1117.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig11237.1117.1
Unique NamemRNA_H-canaliculatus_F_contig11237.1117.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig11237.1117.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig11237contigH-canaliculatus_F_contig11237:2924..3960 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size1037
Cds size567
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig11237.1117.1prot_H-canaliculatus_F_contig11237.1117.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig11237 2981..3547 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928804.5318158-UTR-H-canaliculatus_F_contig11237:2923..29801622928804.5318158-UTR-H-canaliculatus_F_contig11237:2923..2980Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig11237 2924..2980 +
1696845571.5074801-UTR-H-canaliculatus_F_contig11237:2923..29801696845571.5074801-UTR-H-canaliculatus_F_contig11237:2923..2980Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig11237 2924..2980 +
1622928804.5666394-UTR-H-canaliculatus_F_contig11237:3547..39601622928804.5666394-UTR-H-canaliculatus_F_contig11237:3547..3960Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig11237 3548..3960 +
1696845571.528079-UTR-H-canaliculatus_F_contig11237:3547..39601696845571.528079-UTR-H-canaliculatus_F_contig11237:3547..3960Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig11237 3548..3960 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928804.543796-CDS-H-canaliculatus_F_contig11237:2980..35471622928804.543796-CDS-H-canaliculatus_F_contig11237:2980..3547Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig11237 2981..3547 +
1696845571.5165977-CDS-H-canaliculatus_F_contig11237:2980..35471696845571.5165977-CDS-H-canaliculatus_F_contig11237:2980..3547Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig11237 2981..3547 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig11237.1117.1

>prot_H-canaliculatus_F_contig11237.1117.1 ID=prot_H-canaliculatus_F_contig11237.1117.1|Name=mRNA_H-canaliculatus_F_contig11237.1117.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=189bp
MMCASSGVGAAATGSTESTQKLLHLVAKLRRAGRRGGDSRGNRGVGIHEE
RHVGRGQHEGITVLLTKVELRHLCHCVHPRRKKSLVRWTGGTRLVVGAGD
GAACRHCPRQTATGRRRGRSCGWRQACVGTHCLLWSQFGRRGRRTHSHRR
SCGRRSGRPGPSGMSTRGVDRAVAAARLLALLADGQGV*
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mRNA from alignment at H-canaliculatus_F_contig11237:2924..3960+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig11237.1117.1 ID=mRNA_H-canaliculatus_F_contig11237.1117.1|Name=mRNA_H-canaliculatus_F_contig11237.1117.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=1037bp|location=Sequence derived from alignment at H-canaliculatus_F_contig11237:2924..3960+ (Hapterophycus canaliculatus Oshoro5f female)
CTACCACCACCGTGGGTTTTTGCGACCTTCACCAGTTGCTTGACCTCCCG
TTTGGGGATGATGTGCGCCTCCTCGGGCGTGGGAGCGGCGGCGACCGGCT
CGACGGAAAGCACACAGAAGCTCCTCCACCTTGTGGCAAAGCTCCGCCGT
GCCGGTCGCAGAGGCGGCGACAGCAGAGGCAACCGTGGCGTCGGGATCCA
TGAGGAACGCCACGTTGGTCGCGGCCAGCATGAGGGCATCACTGTCCTCC
TCACGAAAGTTGAACTGCGGCACCTGTGCCACTGTGTGCATCCGCGCCGG
AAGAAAAGCCTGGTCCGATGGACGGGGGGCACAAGACTGGTCGTCGGAGC
GGGTGACGGGGCTGCCTGCCGCCACTGCCCAAGACAGACTGCTACAGGCC
GAAGGAGGGGCCGCAGCTGTGGCTGGCGTCAGGCGTGCGTCGGGACGCAC
TGCCTGCTGTGGAGCCAGTTCGGCCGCCGGGGCCGACGCACGCACAGCCA
CAGGAGGTCCTGCGGCCGTCGAAGCGGGCGGCCGGGTCCGAGCGGCATGT
CCACCCGCGGCGTTGACCGCGCGGTCGCGGCAGCTAGGCTCTTGGCGCTC
CTTGCTGATGGCCAGGGAGTGTAGGGCGTCGTGTTCCTCCGTGTGCTCCT
GGGCCAGCACCTCCAGGTGACCGGAGATCCGGAGCTCCGAGGCAAGGAGG
TTGGCGCGGAGCTCGTCCAGCTTCGTCTGCTCGGCGAGGATGGCCGCACC
GCGGGTGGTGCAGGAACTATCCAGAACGGCAAGCCGTTCGGTGAGAGGGC
GCTGCTCGTCACGGAAGGCCTGAGCCTCGAGCTCGGCCGCGTGCCGAGCG
GCCTCCTTTTCGGCAGCAGCAGCCGCGGCGCAAGCGTTCGCGAGGCTCTG
CTGCCGAGCCGCGGTGGACGTGGCGGCGCCCCGCTGCTCGAAGGTGAGCG
AACTCCATAGACCTTTGGGAAACATGAACGTATTTATTTCTCTGTGCCAC
AATTCTTACTGCTGCTGCTATGATACAGGCAGTATCG
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig11237:2924..3960+

>mRNA_H-canaliculatus_F_contig11237.1117.1 ID=mRNA_H-canaliculatus_F_contig11237.1117.1|Name=mRNA_H-canaliculatus_F_contig11237.1117.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=1134bp|location=Sequence derived from alignment at H-canaliculatus_F_contig11237:2924..3960+ (Hapterophycus canaliculatus Oshoro5f female)
ATGATGTGCGCCTCCTCGGGCGTGGGAGCGGCGGCGACCGGCTCGACGGA
AAGCACACAGAAGCTCCTCCACCTTGTGGCAAAGCTCCGCCGTGCCGGTC
GCAGAGGCGGCGACAGCAGAGGCAACCGTGGCGTCGGGATCCATGAGGAA
CGCCACGTTGGTCGCGGCCAGCATGAGGGCATCACTGTCCTCCTCACGAA
AGTTGAACTGCGGCACCTGTGCCACTGTGTGCATCCGCGCCGGAAGAAAA
GCCTGGTCCGATGGACGGGGGGCACAAGACTGGTCGTCGGAGCGGGTGAC
GGGGCTGCCTGCCGCCACTGCCCAAGACAGACTGCTACAGGCCGAAGGAG
GGGCCGCAGCTGTGGCTGGCGTCAGGCGTGCGTCGGGACGCACTGCCTGC
TGTGGAGCCAGTTCGGCCGCCGGGGCCGACGCACGCACAGCCACAGGAGG
TCCTGCGGCCGTCGAAGCGGGCGGCCGGGTCCGAGCGGCATGTCCACCCG
CGGCGTTGACCGCGCGGTCGCGGCAGCTAGGCTCTTGGCGCTCCTTGCTG
ATGGCCAGGGAGTGTAGATGATGTGCGCCTCCTCGGGCGTGGGAGCGGCG
GCGACCGGCTCGACGGAAAGCACACAGAAGCTCCTCCACCTTGTGGCAAA
GCTCCGCCGTGCCGGTCGCAGAGGCGGCGACAGCAGAGGCAACCGTGGCG
TCGGGATCCATGAGGAACGCCACGTTGGTCGCGGCCAGCATGAGGGCATC
ACTGTCCTCCTCACGAAAGTTGAACTGCGGCACCTGTGCCACTGTGTGCA
TCCGCGCCGGAAGAAAAGCCTGGTCCGATGGACGGGGGGCACAAGACTGG
TCGTCGGAGCGGGTGACGGGGCTGCCTGCCGCCACTGCCCAAGACAGACT
GCTACAGGCCGAAGGAGGGGCCGCAGCTGTGGCTGGCGTCAGGCGTGCGT
CGGGACGCACTGCCTGCTGTGGAGCCAGTTCGGCCGCCGGGGCCGACGCA
CGCACAGCCACAGGAGGTCCTGCGGCCGTCGAAGCGGGCGGCCGGGTCCG
AGCGGCATGTCCACCCGCGGCGTTGACCGCGCGGTCGCGGCAGCTAGGCT
CTTGGCGCTCCTTGCTGATGGCCAGGGAGTGTAG
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