mRNA_H-canaliculatus_F_contig10.12.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig10.12.1
Unique NamemRNA_H-canaliculatus_F_contig10.12.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
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BLAST of mRNA_H-canaliculatus_F_contig10.12.1 vs. uniprot
Match: A0A6H5KTK8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KTK8_9PHAE)

HSP 1 Score: 141 bits (356), Expect = 2.330e-34
Identity = 133/219 (60.73%), Postives = 142/219 (64.84%), Query Frame = 3 
Query:  348 MNEVVKAGVLEVTVVQALGV-------ALPRTTRRKPSLLARVTVDGTTKSGQSAQRSNHPVWFPAEPLNPRDGAASSFPPHSDARESSDGG--------GAPRKSGHSVRIFGRAMGGSGSSSGNAPSGERGEVGGSLNWARARY-GGXXXXXXXXXGAGEXXXXXXXXXXXXXXXXXXXXXXXXXX--GSVARGLLFEVREFYGPTRIVVELVSGGN 950
            M+EVVKAGVLEVTVVQA GV        L RT RRKP+L+ARVTVDGTTKSGQ AQRS+HPVWFPA+PLN  D  ASS    S AR  + G                HS R+FGRA      S+G A   ER    G L  AR RY GG    XXXXX   E       XXXXXXXXXXXXXXXXXXX  G VARGLLFEVREFYGPTRIVVELVSGG+
Sbjct:    1 MSEVVKAGVLEVTVVQATGVDLLAATSTLSRTARRKPALVARVTVDGTTKSGQPAQRSHHPVWFPAQPLNLGDMNASSST--SRARGGTSGARNXXXXXXXXXXSVNHSARLFGRAF-----SNGTAHPPEREAANGPLGLARDRYRGGAGDGXXXXXXXSESGNPRHGXXXXXXXXXXXXXXXXXXXXXGGVARGLLFEVREFYGPTRIVVELVSGGS 212
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig10.12.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5KTK8_9PHAE2.330e-3460.73Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig10contigH-canaliculatus_F_contig10:7196..9983 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size953
Cds size606
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig10.12.1prot_H-canaliculatus_F_contig10.12.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig10 7196..8220 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928625.1360447-CDS-H-canaliculatus_F_contig10:7195..77271622928625.1360447-CDS-H-canaliculatus_F_contig10:7195..7727Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10 7196..7727 -
1696845498.6153228-CDS-H-canaliculatus_F_contig10:7195..77271696845498.6153228-CDS-H-canaliculatus_F_contig10:7195..7727Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10 7196..7727 -
1622928625.1527586-CDS-H-canaliculatus_F_contig10:8146..82201622928625.1527586-CDS-H-canaliculatus_F_contig10:8146..8220Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10 8147..8220 -
1696845498.6536477-CDS-H-canaliculatus_F_contig10:8146..82201696845498.6536477-CDS-H-canaliculatus_F_contig10:8146..8220Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10 8147..8220 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928625.163817-UTR-H-canaliculatus_F_contig10:8220..82891622928625.163817-UTR-H-canaliculatus_F_contig10:8220..8289Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig10 8221..8289 -
1696845498.6822412-UTR-H-canaliculatus_F_contig10:8220..82891696845498.6822412-UTR-H-canaliculatus_F_contig10:8220..8289Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig10 8221..8289 -
1622928625.1792421-UTR-H-canaliculatus_F_contig10:9705..99831622928625.1792421-UTR-H-canaliculatus_F_contig10:9705..9983Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig10 9706..9983 -
1696845498.69776-UTR-H-canaliculatus_F_contig10:9705..99831696845498.69776-UTR-H-canaliculatus_F_contig10:9705..9983Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig10 9706..9983 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig10.12.1

>prot_H-canaliculatus_F_contig10.12.1 ID=prot_H-canaliculatus_F_contig10.12.1|Name=mRNA_H-canaliculatus_F_contig10.12.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=202bp
MNEVVKAGVLEVTVVQALGVALPRTTRRKPSLLARVTVDGTTKSGQSAQR
SNHPVWFPAEPLNPRDGAASSFPPHSDARESSDGGGAPRKSGHSVRIFGR
AMGGSGSSSGNAPSGERGEVGGSLNWARARYGGGGGGGGGGGGAGEGGGG
GGSGGAEGSGGEDVEASDGSGGGSVARGLLFEVREFYGPTRIVVELVSGG
NG
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mRNA from alignment at H-canaliculatus_F_contig10:7196..9983-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig10.12.1 ID=mRNA_H-canaliculatus_F_contig10.12.1|Name=mRNA_H-canaliculatus_F_contig10.12.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=2788bp|location=Sequence derived from alignment at H-canaliculatus_F_contig10:7196..9983- (Hapterophycus canaliculatus Oshoro5f female)
CCTCGCCTCGCCTGACCCACTCCAAATATGAATGCGGACCCCCCGTTGAA
CTCTCCGACTCCTGCACAAGCGAAGTAGGCATGCCTCGTGTAAATGACAC
CCTGTGCTGGTGAGATCCCTCTTCTTCTTCGTGCCAGACTTCTGGGGCAC
ATGTTCTACAAGCTTGGGGCGAAGCGAGCGAGCAGGGTGCCCCGTTGGCC
ATCGAACTATTTTTGGTCGTCGTCCCGGAGGTATTAGCGGAGGAGACACC
GCCGACTTTGAAGACTCTGAAGACGCACGTGAGTCCGATACTCAGTGCTA
GGTGTGTCTTTCATCGGTCTACTGCACGGCGCTTGACCACTTGACAAGCT
TATACGAAGGGTGATACCGTTCATGAGATGATTCGCAAGTGAGGGGATCG
GCCTCATCGTTCGCTACGTGTAGCGGAGTCTCCAGGACGCTCCGCCGGAC
GGACTGCTGTACCCGATCCGGACCTCTCCGCACTCGGCTTGGGGCTTTGC
TACACCACAGCACTGGTAGTGGACCACAGACCACAGCAACCGACAATAGT
AGTGCCGCATCAACCGTTGTTTCTTTGTCGCGTCGATCACTTTCTGTCAA
CTCTCAATTGCTCAAATGAAAATCCGAAAAAGAAAAGAGAAACCGTCCGC
GATAGCGACACAACTTCTGTAGCAGCAATACAGTCGTAATGCAGATCTGT
AGACTGGACCAGACTACAAGTACAAGGTACTGTAATACTCCGAGTATCCC
GGTATCATGAACTCCTCACGCCATGGAGGGGAGTAGACCAGGTCCATGAG
AACTGAGAACTGCAATGCAATCGGAAAGTCCCCGCCACTGCTGTAGGCAA
CCCGTTTTGTAGACCACGCACCTGTCTTTCCGCCTGAGCGCATGAGGATT
CCCCAACTTTCATTAGGTGTTTGTAGACGTCGTCCTTCGCGGATTAAAGG
CACAGCTGTACCAGTGCACAGGTTACAGACAAGCCGTGCTGGTGCTCTGA
CGGAAAAGAGCAGTTCGGCTCCCGGGGTTTGCGGAGGGGGTGAAACTCGA
GTCCATCTCAGTTGTGGTGCAGTCGGAGCACGGGTAATCAGCTTGGCAAG
GGTCACTTGATACGCTGCCATGTATCAGAACGCACCATGGATTCCCCGAT
AATGTTTCCTGGAGAGCTCTTTTTGATGTATCGCGACGGATCTGTTTGGC
GGTTACGCACGTCAACTGCAGATAGGGCACGCTTGTTTGGTTCTCTTCCG
CAGCGCAGCAGAAGTACTGTACCAGGCATGCTTCTTCGTTGCTGGCAACC
CCTGCTGTAGACCGCATTTCAGGATTGGTCGCACAGCCTTCGCCAGTCAA
CTCCAAGCATACCGACAAACCTGGAACGAGTATTTGATCCAATATCCTAT
TAATTCTCTCGGGACGGGAGCACCACGGTTGGGGAAAATTTAGCTTAGAT
CTTTTTCATAACCCAGCGCGTCGGCGATGTCCTTTTTTTCTTGGCGATGA
TGTTGGTTCTGGCCTTGCGTGGATGAGCGCCGCAAATAAATCCTTGAATC
CCTTACCCAAAGGTCCACAGGCAACCAATCCTAAGCTTCTGTGTCCACAT
CTTACCGTAGGCTTTAAATCAAACGTTGCGTCTGTGGGCGGTGAAGCACC
CTCGTTTACGCCGTCTCACGCCGTCTCAACTGTCCGAAAAACAGGAGTGA
GGCACGAATCGAGTCGTCAATTCGCTCATTGGTCGTTTGGACCTCCCGAG
GGTGGATAGGAAGATGAATGAGGTGGTGAAGGCGGGCGTGCTGGAGGTGA
CTGTGGTACAGGCCCTTGGAGTGGCCCTTCCCCGAACGTGAGTGAAACCC
CCATCTTGCTTCGCACTGCCGATGGGATTTGCCCTCCGCTTCCCCGCGCA
AAAACGTCGCGGGATCGGCGTTCCCGCAGATTTTCGAAACCACACGTCTG
TACGCCGTCCGGTGCGGATCGTGCTGCTACCCCGTGGAGGACATGGAGTT
GTTTGAAAGAAAACATAACAACATCGTTGGAACACCTCATGAATTGTTTT
GTTCGATCCCTGTCCCCTTCCGACCGACCGACCGACCGACGACCAACGGC
CAAGTCGAGACGACCAACGGTCAAGCCTGCATCTTGTTCCCACCCTGCTG
GAGCCCAGCCCTGCTACTCCCATCCTGACTCTTGTCTTCTCTCCTTTCTC
CCTGTCCCTGTCTCTGGCCGCTGTTTCTGCTGTACAATTGTATCTACCCG
CCGCAGCACGCGCCGGAAGCCCTCTCTCCTAGCACGTGTCACCGTCGATG
GAACCACCAAGTCTGGACAGTCTGCGCAGCGGAGCAATCACCCGGTGTGG
TTCCCCGCGGAGCCCCTCAATCCCCGAGACGGGGCCGCGTCTTCTTTCCC
GCCGCACTCTGACGCGAGGGAGAGCAGCGACGGTGGCGGCGCCCCACGCA
AGAGCGGCCATAGTGTCCGCATCTTCGGCCGTGCAATGGGTGGCAGTGGC
AGCAGCAGCGGCAACGCTCCCTCGGGAGAGAGGGGAGAGGTCGGCGGCTC
GCTCAATTGGGCAAGAGCTCGGTACGGCGGCGGCGGCGGCGGCGGCGGCG
GCGGCGGCGGCGCGGGGGAAGGGGGCGGTGGCGGCGGCAGCGGCGGGGCG
GAAGGAAGCGGAGGAGAGGATGTTGAGGCCAGCGACGGTAGCGGAGGTGG
CAGCGTCGCACGCGGGCTATTGTTCGAGGTTCGCGAATTTTATGGCCCGA
CTCGCATCGTCGTGGAGCTAGTGTCCGGTGGGAACGGC
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig10:7196..9983-

>mRNA_H-canaliculatus_F_contig10.12.1 ID=mRNA_H-canaliculatus_F_contig10.12.1|Name=mRNA_H-canaliculatus_F_contig10.12.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=1212bp|location=Sequence derived from alignment at H-canaliculatus_F_contig10:7196..9983- (Hapterophycus canaliculatus Oshoro5f female)
ATGAATGAGGTGGTGAAGGCGGGCGTGCTGGAGGTGACTGTGGTACAGGC
CCTTGGAGTGGCCCTTCCCCGAACATGAATGAGGTGGTGAAGGCGGGCGT
GCTGGAGGTGACTGTGGTACAGGCCCTTGGAGTGGCCCTTCCCCGAACCA
CGCGCCGGAAGCCCTCTCTCCTAGCACGTGTCACCGTCGATGGAACCACC
AAGTCTGGACAGTCTGCGCAGCGGAGCAATCACCCGGTGTGGTTCCCCGC
GGAGCCCCTCAATCCCCGAGACGGGGCCGCGTCTTCTTTCCCGCCGCACT
CTGACGCGAGGGAGAGCAGCGACGGTGGCGGCGCCCCACGCAAGAGCGGC
CATAGTGTCCGCATCTTCGGCCGTGCAATGGGTGGCAGTGGCAGCAGCAG
CGGCAACGCTCCCTCGGGAGAGAGGGGAGAGGTCGGCGGCTCGCTCAATT
GGGCAAGAGCTCGGTACGGCGGCGGCGGCGGCGGCGGCGGCGGCGGCGGC
GGCGCGGGGGAAGGGGGCGGTGGCGGCGGCAGCGGCGGGGCGGAAGGAAG
CGGAGGAGAGGATGTTGAGGCCAGCGACGGTAGCGGAGGTGGCAGCGTCG
CACGCGGGCTATTGTTCGAGGTTCGCGAATTTTATGGCCCGACTCGCATC
GTCGTGGAGCTAGTGTCCGGTGGGAACGGCCACGCGCCGGAAGCCCTCTC
TCCTAGCACGTGTCACCGTCGATGGAACCACCAAGTCTGGACAGTCTGCG
CAGCGGAGCAATCACCCGGTGTGGTTCCCCGCGGAGCCCCTCAATCCCCG
AGACGGGGCCGCGTCTTCTTTCCCGCCGCACTCTGACGCGAGGGAGAGCA
GCGACGGTGGCGGCGCCCCACGCAAGAGCGGCCATAGTGTCCGCATCTTC
GGCCGTGCAATGGGTGGCAGTGGCAGCAGCAGCGGCAACGCTCCCTCGGG
AGAGAGGGGAGAGGTCGGCGGCTCGCTCAATTGGGCAAGAGCTCGGTACG
GCGGCGGCGGCGGCGGCGGCGGCGGCGGCGGCGGCGCGGGGGAAGGGGGC
GGTGGCGGCGGCAGCGGCGGGGCGGAAGGAAGCGGAGGAGAGGATGTTGA
GGCCAGCGACGGTAGCGGAGGTGGCAGCGTCGCACGCGGGCTATTGTTCG
AGGTTCGCGAATTTTATGGCCCGACTCGCATCGTCGTGGAGCTAGTGTCC
GGTGGGAACGGC
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