mRNA_H-canaliculatus_F_contig11146.1034.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig11146.1034.1
Unique NamemRNA_H-canaliculatus_F_contig11146.1034.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig11146.1034.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig11146contigH-canaliculatus_F_contig11146:748..1645 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Exons2
Model size551
Cds size549
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928792.740866-CDS-H-canaliculatus_F_contig11146:747..10911622928792.740866-CDS-H-canaliculatus_F_contig11146:747..1091Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig11146 748..1091 +
1696845566.2959573-CDS-H-canaliculatus_F_contig11146:747..10911696845566.2959573-CDS-H-canaliculatus_F_contig11146:747..1091Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig11146 748..1091 +
1622928792.7530928-CDS-H-canaliculatus_F_contig11146:1439..16441622928792.7530928-CDS-H-canaliculatus_F_contig11146:1439..1644Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig11146 1440..1644 +
1696845566.3057616-CDS-H-canaliculatus_F_contig11146:1439..16441696845566.3057616-CDS-H-canaliculatus_F_contig11146:1439..1644Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig11146 1440..1644 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig11146.1034.1prot_H-canaliculatus_F_contig11146.1034.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig11146 748..1644 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig11146.1034.1

>prot_H-canaliculatus_F_contig11146.1034.1 ID=prot_H-canaliculatus_F_contig11146.1034.1|Name=mRNA_H-canaliculatus_F_contig11146.1034.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=183bp
SRVRPWFLASLALALPSTACGLAAGPSPRRGAQNLDARPKLTVRLRAPRP
LQYAARGARTEGSMDGFPGCHHLDESACVEPTRQLRCRSTASWADNVRLG
GRGKERGIGAVASFFARALENRVEGHGVLHRKAVSWRYRSIDGVPTRREV
TRAALQPREQHCWGWAIRRGHLVPPAAFATNPN
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mRNA from alignment at H-canaliculatus_F_contig11146:748..1645+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig11146.1034.1 ID=mRNA_H-canaliculatus_F_contig11146.1034.1|Name=mRNA_H-canaliculatus_F_contig11146.1034.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=898bp|location=Sequence derived from alignment at H-canaliculatus_F_contig11146:748..1645+ (Hapterophycus canaliculatus Oshoro5f female)
TCGCGGGTAAGGCCATGGTTTCTAGCGTCCCTTGCACTTGCACTCCCAAG
CACGGCCTGCGGCCTTGCGGCGGGCCCTTCCCCCAGAAGGGGCGCACAGA
ACCTCGACGCTCGGCCGAAACTTACGGTTCGCCTTCGTGCCCCCCGCCCC
TTGCAGTATGCGGCGAGGGGGGCAAGGACAGAGGGGTCCATGGACGGTTT
TCCAGGGTGCCATCATCTCGACGAGAGCGCGTGCGTCGAGCCAACCCGGC
AGCTGCGGTGCAGATCGACCGCGTCGTGGGCCGACAACGTCCGGCTTGGA
GGCCGAGGGAAGGAGAGAGGAATTGGAGCGGTCGCGAGTTTTTTTCGCGC
AAGAAAAGAAAATGGACACGAGCAAGGCCATAAGAAAAGAAAACGGAGAA
GAGCAAGGCCATCGCAGCGGGAAGGCGGAATAAACAAGAAAAGGGACAAA
CGAAGCAAAATCGCCCGTGTGGCGGCTCTCCTCTTGGGGTAAACCCCCTG
GCTGGGTTTTTTCGTTGGTTACACCGGAAGCTGGAGGTCTTTGCGTCGAG
ACTAGAGATGGTACGGACAGCTGCATGATGCGTGATAGGCAAGCTCTCTC
TCTCTCTCTCTCTCTCTCTCTCTCTCGTCGCTGTCTCTCTCTTCTGGCCT
CTTCACGCCCACGACACATGCTTCTGTTATTCGACTTCTACATGCACGGG
CTTTGGAAAATCGGGTTGAGGGGCACGGTGTCTTGCACCGGAAAGCCGTT
TCGTGGCGGTATCGAAGCATCGATGGTGTACCAACTCGTCGTGAGGTCAC
GAGGGCGGCTCTTCAACCCCGCGAACAACACTGTTGGGGTTGGGCGATAC
GCCGAGGGCACTTAGTACCGCCTGCTGCCTTTGCCACAAACCCCAACC
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig11146:748..1645+

>mRNA_H-canaliculatus_F_contig11146.1034.1 ID=mRNA_H-canaliculatus_F_contig11146.1034.1|Name=mRNA_H-canaliculatus_F_contig11146.1034.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=1098bp|location=Sequence derived from alignment at H-canaliculatus_F_contig11146:748..1645+ (Hapterophycus canaliculatus Oshoro5f female)
TCGCGGGTAAGGCCATGGTTTCTAGCGTCCCTTGCACTTGCACTCCCAAG
CACGGCCTGCGGCCTTGCGGCGGGCCCTTCCCCCAGAAGGGGCGCACAGA
ACCTCGACGCTCGGCCGAAACTTACGGTTCGCCTTCGTGCCCCCCGCCCC
TTGCAGTATGCGGCGAGGGGGGCAAGGACAGAGGGGTCCATGGACGGTTT
TCCAGGGTGCCATCATCTCGACGAGAGCGCGTGCGTCGAGCCAACCCGGC
AGCTGCGGTGCAGATCGACCGCGTCGTGGGCCGACAACGTCCGGCTTGGA
GGCCGAGGGAAGGAGAGAGGAATTGGAGCGGTCGCGAGTTTTTTTCGCGG
GTAAGGCCATGGTTTCTAGCGTCCCTTGCACTTGCACTCCCAAGCACGGC
CTGCGGCCTTGCGGCGGGCCCTTCCCCCAGAAGGGGCGCACAGAACCTCG
ACGCTCGGCCGAAACTTACGGTTCGCCTTCGTGCCCCCCGCCCCTTGCAG
TATGCGGCGAGGGGGGCAAGGACAGAGGGGTCCATGGACGGTTTTCCAGG
GTGCCATCATCTCGACGAGAGCGCGTGCGTCGAGCCAACCCGGCAGCTGC
GGTGCAGATCGACCGCGTCGTGGGCCGACAACGTCCGGCTTGGAGGCCGA
GGGAAGGAGAGAGGAATTGGAGCGGTCGCGAGTTTTTTTGCACGGGCTTT
GGAAAATCGGGTTGAGGGGCACGGTGTCTTGCACCGGAAAGCCGTTTCGT
GGCGGTATCGAAGCATCGATGGTGTACCAACTCGTCGTGAGGTCACGAGG
GCGGCTCTTCAACCCCGCGAACAACACTGTTGGGGTTGGGCGATACGCCG
AGGGCACTTAGTACCGCCTGCTGCCTTTGCCACAAACCCCAACTGCACGG
GCTTTGGAAAATCGGGTTGAGGGGCACGGTGTCTTGCACCGGAAAGCCGT
TTCGTGGCGGTATCGAAGCATCGATGGTGTACCAACTCGTCGTGAGGTCA
CGAGGGCGGCTCTTCAACCCCGCGAACAACACTGTTGGGGTTGGGCGATA
CGCCGAGGGCACTTAGTACCGCCTGCTGCCTTTGCCACAAACCCCAAC
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