mRNA_H-canaliculatus_F_contig111.1003.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig111.1003.1
Unique NamemRNA_H-canaliculatus_F_contig111.1003.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig111.1003.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig111contigH-canaliculatus_F_contig111:56706..57172 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal anchor
Exons1
Model size467
Cds size396
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928786.0154388-UTR-H-canaliculatus_F_contig111:56705..567761622928786.0154388-UTR-H-canaliculatus_F_contig111:56705..56776Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig111 56706..56776 +
1696845563.8482063-UTR-H-canaliculatus_F_contig111:56705..567761696845563.8482063-UTR-H-canaliculatus_F_contig111:56705..56776Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig111 56706..56776 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928786.0300524-CDS-H-canaliculatus_F_contig111:56776..571721622928786.0300524-CDS-H-canaliculatus_F_contig111:56776..57172Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig111 56777..57172 +
1696845563.859293-CDS-H-canaliculatus_F_contig111:56776..571721696845563.859293-CDS-H-canaliculatus_F_contig111:56776..57172Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig111 56777..57172 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig111.1003.1prot_H-canaliculatus_F_contig111.1003.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig111 56777..57172 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig111.1003.1

>prot_H-canaliculatus_F_contig111.1003.1 ID=prot_H-canaliculatus_F_contig111.1003.1|Name=mRNA_H-canaliculatus_F_contig111.1003.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=132bp
MDQSMDHQASRRRILPHGESSQEASKFSWCRIYVDVRFPISFISLNHLSF
LLFLTTSFPHPIFITWLSTTFLLIHNFILSIKRMEPSPNGIDKSPLRWTV
SQVGIPSVLLTCFIKAKCQELGYITPRLLSL*
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mRNA from alignment at H-canaliculatus_F_contig111:56706..57172+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig111.1003.1 ID=mRNA_H-canaliculatus_F_contig111.1003.1|Name=mRNA_H-canaliculatus_F_contig111.1003.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=467bp|location=Sequence derived from alignment at H-canaliculatus_F_contig111:56706..57172+ (Hapterophycus canaliculatus Oshoro5f female)
TATTTCCGTCCGCTGCTGTACAGTACGACAATGAAGGATTAGTCGTGTGA
ATCAGATCAAGGGTTCGACCGATGGATCAATCGATGGATCACCAAGCTTC
TAGGCGACGAATTCTCCCACACGGCGAATCATCACAGGAAGCATCAAAGT
TCTCGTGGTGTAGAATATACGTTGATGTTCGCTTCCCCATCTCATTCATC
TCCTTAAACCACCTTTCTTTCCTTCTATTTTTAACCACATCCTTCCCCCA
TCCCATATTTATCACGTGGTTGTCCACCACGTTCCTACTGATACATAATT
TCATCCTGTCAATCAAGCGAATGGAACCCTCACCGAATGGAATTGACAAA
AGCCCCTTGCGATGGACAGTGTCTCAGGTGGGTATTCCTTCGGTGTTGTT
GACTTGCTTTATAAAAGCTAAATGCCAAGAACTTGGATATATCACCCCAC
GGTTGCTGTCCCTGTAG
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig111:56706..57172+

>mRNA_H-canaliculatus_F_contig111.1003.1 ID=mRNA_H-canaliculatus_F_contig111.1003.1|Name=mRNA_H-canaliculatus_F_contig111.1003.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=792bp|location=Sequence derived from alignment at H-canaliculatus_F_contig111:56706..57172+ (Hapterophycus canaliculatus Oshoro5f female)
ATGGATCAATCGATGGATCACCAAGCTTCTAGGCGACGAATTCTCCCACA
CGGCGAATCATCACAGGAAGCATCAAAGTTCTCGTGGTGTAGAATATACG
TTGATGTTCGCTTCCCCATCTCATTCATCTCCTTAAACCACCTTTCTTTC
CTTCTATTTTTAACCACATCCTTCCCCCATCCCATATTTATCACGTGGTT
GTCCACCACGTTCCTACTGATACATAATTTCATCCTGTCAATCAAGCGAA
TGGAACCCTCACCGAATGGAATTGACAAAAGCCCCTTGCGATGGACAGTG
TCTCAGGTGGGTATTCCTTCGGTGTTGTTGACTTGCTTTATAAAAGCTAA
ATGCCAAGAACTTGGATATATCACCCCACGGTTGCTGTCCCTGTAGATGG
ATCAATCGATGGATCACCAAGCTTCTAGGCGACGAATTCTCCCACACGGC
GAATCATCACAGGAAGCATCAAAGTTCTCGTGGTGTAGAATATACGTTGA
TGTTCGCTTCCCCATCTCATTCATCTCCTTAAACCACCTTTCTTTCCTTC
TATTTTTAACCACATCCTTCCCCCATCCCATATTTATCACGTGGTTGTCC
ACCACGTTCCTACTGATACATAATTTCATCCTGTCAATCAAGCGAATGGA
ACCCTCACCGAATGGAATTGACAAAAGCCCCTTGCGATGGACAGTGTCTC
AGGTGGGTATTCCTTCGGTGTTGTTGACTTGCTTTATAAAAGCTAAATGC
CAAGAACTTGGATATATCACCCCACGGTTGCTGTCCCTGTAG
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