mRNA_H-canaliculatus_F_contig11078.980.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig11078.980.1
Unique NamemRNA_H-canaliculatus_F_contig11078.980.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
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BLAST of mRNA_H-canaliculatus_F_contig11078.980.1 vs. uniprot
Match: D7G733_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G733_ECTSI)

HSP 1 Score: 129 bits (323), Expect = 9.050e-32
Identity = 59/81 (72.84%), Postives = 66/81 (81.48%), Query Frame = 2 
Query:    2 VVDQFLIASEMKVKYAWLGFYYFVVYIFYNVXXXXEHNEEERLTFEVFDWDVAPGKACLWVFLILAIFVPGFAGFHFFVYR 244
            ++DQFLIA+EMK KYAWLG Y+FVVYIFYNV    EHN E+R+TFEVFDWD  PG+ACLWVFLILA  VPGF   H FVYR
Sbjct:  181 LLDQFLIATEMKFKYAWLGLYFFVVYIFYNVIYYYEHNVEDRVTFEVFDWDERPGRACLWVFLILAFGVPGFTALHVFVYR 261
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig11078.980.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7G733_ECTSI9.050e-3272.84Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig11078contigH-canaliculatus_F_contig11078:155..886 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size732
Cds size732
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928783.5131881-CDS-H-canaliculatus_F_contig11078:154..8861622928783.5131881-CDS-H-canaliculatus_F_contig11078:154..886Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig11078 155..886 +
1696845562.5744374-CDS-H-canaliculatus_F_contig11078:154..8861696845562.5744374-CDS-H-canaliculatus_F_contig11078:154..886Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig11078 155..886 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig11078.980.1prot_H-canaliculatus_F_contig11078.980.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig11078 155..886 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig11078.980.1

>prot_H-canaliculatus_F_contig11078.980.1 ID=prot_H-canaliculatus_F_contig11078.980.1|Name=mRNA_H-canaliculatus_F_contig11078.980.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=244bp
GGRPVPHRLGDESQVRLAGLLLFRRVHLLQRDLLLRAQRGGAIDVRGLRL
GRGTGEGLPLGLPHPRYLRPRFCGLPLLRVQVWRRVMLVVAVFSNSAVGR
LAGWIDARSFLFPPVFFSSPPLNFVLSLCCFISCMHAARALFPPPFSIRF
RANAEEKLRHSFLPSAFLVGCIFCFPNTCPSVFSPLFLSIFVPNQLTHPP
THPRLPSCQPEIDQIRLRERMYVSYKHEIETVPEPPPTPPKTEK
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mRNA from alignment at H-canaliculatus_F_contig11078:155..886+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig11078.980.1 ID=mRNA_H-canaliculatus_F_contig11078.980.1|Name=mRNA_H-canaliculatus_F_contig11078.980.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=732bp|location=Sequence derived from alignment at H-canaliculatus_F_contig11078:155..886+ (Hapterophycus canaliculatus Oshoro5f female)
GGTGGTAGACCAGTTCCTCATCGCCTCGGAGATGAAAGTCAAGTACGCCT
GGCTGGGCTTTTACTATTTCGTCGTGTACATCTTCTACAACGTGATCTAC
TACTACGAGCACAACGAGGAGGAGCGATTGACGTTCGAGGTCTTCGACTG
GGACGTGGCACCGGGGAAGGCTTGCCTCTGGGTCTTCCTCATCCTCGCTA
TCTTCGTCCCAGGTTTTGCGGGCTTCCACTTCTTCGTGTACAGGTGTGGC
GGCGTGTCATGCTCGTTGTCGCAGTGTTCAGCAACAGTGCGGTTGGCCGA
TTGGCTGGTTGGATTGATGCGCGCTCGTTTTTATTTCCTCCCGTATTTTT
TTCTTCTCCACCGCTCAATTTCGTCTTATCGTTGTGTTGCTTCATCTCTT
GCATGCATGCCGCGCGTGCGTTGTTTCCCCCCCCCTTCTCTATCCGGTTT
CGCGCAAATGCGGAAGAAAAACTGCGTCATTCTTTCCTTCCCTCGGCTTT
TCTTGTCGGCTGTATTTTCTGCTTTCCCAATACCTGTCCTTCGGTGTTTT
CTCCTCTCTTTTTGTCTATTTTTGTCCCCAACCAACTCACCCATCCACCC
ACCCACCCCCGCCTGCCTTCATGCCAACCCGAAATCGATCAAATCAGGCT
TCGCGAGCGAATGTACGTGTCTTACAAGCACGAGATCGAGACCGTGCCCG
AGCCGCCCCCGACGCCGCCGAAGACGGAGAAG
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig11078:155..886+

>mRNA_H-canaliculatus_F_contig11078.980.1 ID=mRNA_H-canaliculatus_F_contig11078.980.1|Name=mRNA_H-canaliculatus_F_contig11078.980.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=1464bp|location=Sequence derived from alignment at H-canaliculatus_F_contig11078:155..886+ (Hapterophycus canaliculatus Oshoro5f female)
GGTGGTAGACCAGTTCCTCATCGCCTCGGAGATGAAAGTCAAGTACGCCT
GGCTGGGCTTTTACTATTTCGTCGTGTACATCTTCTACAACGTGATCTAC
TACTACGAGCACAACGAGGAGGAGCGATTGACGTTCGAGGTCTTCGACTG
GGACGTGGCACCGGGGAAGGCTTGCCTCTGGGTCTTCCTCATCCTCGCTA
TCTTCGTCCCAGGTTTTGCGGGCTTCCACTTCTTCGTGTACAGGTGTGGC
GGCGTGTCATGCTCGTTGTCGCAGTGTTCAGCAACAGTGCGGTTGGCCGA
TTGGCTGGTTGGATTGATGCGCGCTCGTTTTTATTTCCTCCCGTATTTTT
TTCTTCTCCACCGCTCAATTTCGTCTTATCGTTGTGTTGCTTCATCTCTT
GCATGCATGCCGCGCGTGCGTTGTTTCCCCCCCCCTTCTCTATCCGGTTT
CGCGCAAATGCGGAAGAAAAACTGCGTCATTCTTTCCTTCCCTCGGCTTT
TCTTGTCGGCTGTATTTTCTGCTTTCCCAATACCTGTCCTTCGGTGTTTT
CTCCTCTCTTTTTGTCTATTTTTGTCCCCAACCAACTCACCCATCCACCC
ACCCACCCCCGCCTGCCTTCATGCCAACCCGAAATCGATCAAATCAGGCT
TCGCGAGCGAATGTACGTGTCTTACAAGCACGAGATCGAGACCGTGCCCG
AGCCGCCCCCGACGCCGCCGAAGACGGAGAAGGGTGGTAGACCAGTTCCT
CATCGCCTCGGAGATGAAAGTCAAGTACGCCTGGCTGGGCTTTTACTATT
TCGTCGTGTACATCTTCTACAACGTGATCTACTACTACGAGCACAACGAG
GAGGAGCGATTGACGTTCGAGGTCTTCGACTGGGACGTGGCACCGGGGAA
GGCTTGCCTCTGGGTCTTCCTCATCCTCGCTATCTTCGTCCCAGGTTTTG
CGGGCTTCCACTTCTTCGTGTACAGGTGTGGCGGCGTGTCATGCTCGTTG
TCGCAGTGTTCAGCAACAGTGCGGTTGGCCGATTGGCTGGTTGGATTGAT
GCGCGCTCGTTTTTATTTCCTCCCGTATTTTTTTCTTCTCCACCGCTCAA
TTTCGTCTTATCGTTGTGTTGCTTCATCTCTTGCATGCATGCCGCGCGTG
CGTTGTTTCCCCCCCCCTTCTCTATCCGGTTTCGCGCAAATGCGGAAGAA
AAACTGCGTCATTCTTTCCTTCCCTCGGCTTTTCTTGTCGGCTGTATTTT
CTGCTTTCCCAATACCTGTCCTTCGGTGTTTTCTCCTCTCTTTTTGTCTA
TTTTTGTCCCCAACCAACTCACCCATCCACCCACCCACCCCCGCCTGCCT
TCATGCCAACCCGAAATCGATCAAATCAGGCTTCGCGAGCGAATGTACGT
GTCTTACAAGCACGAGATCGAGACCGTGCCCGAGCCGCCCCCGACGCCGC
CGAAGACGGAGAAG
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