mRNA_H-canaliculatus_F_contig10066.97.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig10066.97.1
Unique NamemRNA_H-canaliculatus_F_contig10066.97.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
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BLAST of mRNA_H-canaliculatus_F_contig10066.97.1 vs. uniprot
Match: A0A6H5JY17_9PHAE (SWIM-type domain-containing protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JY17_9PHAE)

HSP 1 Score: 79.3 bits (194), Expect = 4.080e-15
Identity = 38/46 (82.61%), Postives = 42/46 (91.30%), Query Frame = 3 
Query:  171 SVRARTSLEAHLELIGELPVHVAASVRYKLMPARPGHIVGFGPDGF 308
            SV ARTSLEA L+LIGELPVHVAA+VRYKL PARPGH+V FGP+GF
Sbjct:  311 SVWARTSLEALLDLIGELPVHVAAAVRYKLTPARPGHVVVFGPNGF 356
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BLAST of mRNA_H-canaliculatus_F_contig10066.97.1 vs. uniprot
Match: A0A6H5KWR3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KWR3_9PHAE)

HSP 1 Score: 68.2 bits (165), Expect = 3.270e-11
Identity = 31/43 (72.09%), Postives = 37/43 (86.05%), Query Frame = 3 
Query:  180 ARTSLEAHLELIGELPVHVAASVRYKLMPARPGHIVGFGPDGF 308
            ARTSLEA L+L+  +PVH+AA+VRYKL P+RPGHIV FGP GF
Sbjct:  327 ARTSLEALLDLVSRVPVHLAAAVRYKLTPSRPGHIVVFGPGGF 369
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BLAST of mRNA_H-canaliculatus_F_contig10066.97.1 vs. uniprot
Match: A0A6H5L2H3_9PHAE (SWIM-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L2H3_9PHAE)

HSP 1 Score: 67.4 bits (163), Expect = 6.300e-11
Identity = 30/47 (63.83%), Postives = 39/47 (82.98%), Query Frame = 3 
Query:  168 HSVRARTSLEAHLELIGELPVHVAASVRYKLMPARPGHIVGFGPDGF 308
            ++V ARTSLEA L+L+  +PVH+AA+VRYKL P+RPGH+V  GP GF
Sbjct:  267 NTVWARTSLEAPLDLVSRVPVHLAAAVRYKLTPSRPGHVVVVGPGGF 313
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BLAST of mRNA_H-canaliculatus_F_contig10066.97.1 vs. uniprot
Match: A0A6H5JYU5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JYU5_9PHAE)

HSP 1 Score: 63.5 bits (153), Expect = 1.440e-9
Identity = 29/47 (61.70%), Postives = 38/47 (80.85%), Query Frame = 1 
Query:   46 ILRRKLETAHFNLNLFDEAPPDTNLEKDCMGGPEAESTDDSTAYGRA 186
            +LR++LE AHF+ N+ +EAPPDT+LE DC  GPEAEST D+T + RA
Sbjct:  157 VLRQQLEAAHFDFNVCEEAPPDTDLEIDCKLGPEAESTGDNTVWARA 203
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BLAST of mRNA_H-canaliculatus_F_contig10066.97.1 vs. uniprot
Match: A0A6H5JZB4_9PHAE (SWIM-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZB4_9PHAE)

HSP 1 Score: 60.1 bits (144), Expect = 2.530e-8
Identity = 27/46 (58.70%), Postives = 36/46 (78.26%), Query Frame = 1 
Query:   46 ILRRKLETAHFNLNLFDEAPPDTNLEKDCMGGPEAESTDDSTAYGR 183
            +LR++LE AHF+ NL +E PPDT+LE DC   PEAEST+D+T + R
Sbjct:  716 VLRQQLEAAHFDFNLCEEGPPDTDLEIDCKLDPEAESTEDNTVWAR 761
[Close]
BLAST of mRNA_H-canaliculatus_F_contig10066.97.1 vs. uniprot
Match: A0A6H5KC44_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KC44_9PHAE)

HSP 1 Score: 52.0 bits (123), Expect = 1.410e-5
Identity = 21/29 (72.41%), Postives = 26/29 (89.66%), Query Frame = 3 
Query:  222 LPVHVAASVRYKLMPARPGHIVGFGPDGF 308
            +PVH+AA+VRYKL P+RPGH+V FGP GF
Sbjct:   71 VPVHLAAAVRYKLTPSRPGHVVVFGPGGF 99
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig10066.97.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
A0A6H5JY17_9PHAE4.080e-1582.61SWIM-type domain-containing protein n=3 Tax=Ectoca... [more]
A0A6H5KWR3_9PHAE3.270e-1172.09Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L2H3_9PHAE6.300e-1163.83SWIM-type domain-containing protein n=1 Tax=Ectoca... [more]
A0A6H5JYU5_9PHAE1.440e-961.70Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JZB4_9PHAE2.530e-858.70SWIM-type domain-containing protein n=1 Tax=Ectoca... [more]
A0A6H5KC44_9PHAE1.410e-572.41Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig10066contigH-canaliculatus_F_contig10066:2297..2605 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size309
Cds size309
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928634.3591201-CDS-H-canaliculatus_F_contig10066:2296..26051622928634.3591201-CDS-H-canaliculatus_F_contig10066:2296..2605Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10066 2297..2605 +
1696845505.3769557-CDS-H-canaliculatus_F_contig10066:2296..26051696845505.3769557-CDS-H-canaliculatus_F_contig10066:2296..2605Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10066 2297..2605 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig10066.97.1prot_H-canaliculatus_F_contig10066.97.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig10066 2297..2605 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig10066.97.1

>prot_H-canaliculatus_F_contig10066.97.1 ID=prot_H-canaliculatus_F_contig10066.97.1|Name=mRNA_H-canaliculatus_F_contig10066.97.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=103bp
RRGRRRPPRSSGGGGILRRKLETAHFNLNLFDEAPPDTNLEKDCMGGPEA
ESTDDSTAYGRARRWRHISNSSANSPSTLRLPCDTSSCLHGRAILWVSGP
MAS
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mRNA from alignment at H-canaliculatus_F_contig10066:2297..2605+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig10066.97.1 ID=mRNA_H-canaliculatus_F_contig10066.97.1|Name=mRNA_H-canaliculatus_F_contig10066.97.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=309bp|location=Sequence derived from alignment at H-canaliculatus_F_contig10066:2297..2605+ (Hapterophycus canaliculatus Oshoro5f female)
CGCCGCGGACGACGACGTCCGCCCCGGTCCTCTGGTGGGGGGGGTATCCT
TCGTCGAAAGCTTGAGACCGCACACTTCAACCTCAACCTTTTCGATGAAG
CGCCGCCCGACACTAACCTAGAGAAGGACTGCATGGGTGGCCCTGAGGCC
GAATCGACTGACGACAGCACAGCGTACGGGCGCGCACGTCGTTGGAGGCA
CATCTCGAACTCATCGGCGAACTCCCCGTCCACGTTGCGGCTTCCGTGCG
ATACAAGCTCATGCCTGCACGGCCGGGCCATATTGTGGGTTTCGGGCCCG
ATGGCTTCC
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig10066:2297..2605+

>mRNA_H-canaliculatus_F_contig10066.97.1 ID=mRNA_H-canaliculatus_F_contig10066.97.1|Name=mRNA_H-canaliculatus_F_contig10066.97.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=618bp|location=Sequence derived from alignment at H-canaliculatus_F_contig10066:2297..2605+ (Hapterophycus canaliculatus Oshoro5f female)
CGCCGCGGACGACGACGTCCGCCCCGGTCCTCTGGTGGGGGGGGTATCCT
TCGTCGAAAGCTTGAGACCGCACACTTCAACCTCAACCTTTTCGATGAAG
CGCCGCCCGACACTAACCTAGAGAAGGACTGCATGGGTGGCCCTGAGGCC
GAATCGACTGACGACAGCACAGCGTACGGGCGCGCACGTCGTTGGAGGCA
CATCTCGAACTCATCGGCGAACTCCCCGTCCACGTTGCGGCTTCCGTGCG
ATACAAGCTCATGCCTGCACGGCCGGGCCATATTGTGGGTTTCGGGCCCG
ATGGCTTCCCGCCGCGGACGACGACGTCCGCCCCGGTCCTCTGGTGGGGG
GGGTATCCTTCGTCGAAAGCTTGAGACCGCACACTTCAACCTCAACCTTT
TCGATGAAGCGCCGCCCGACACTAACCTAGAGAAGGACTGCATGGGTGGC
CCTGAGGCCGAATCGACTGACGACAGCACAGCGTACGGGCGCGCACGTCG
TTGGAGGCACATCTCGAACTCATCGGCGAACTCCCCGTCCACGTTGCGGC
TTCCGTGCGATACAAGCTCATGCCTGCACGGCCGGGCCATATTGTGGGTT
TCGGGCCCGATGGCTTCC
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