mRNA_H-canaliculatus_F_contig10064.96.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig10064.96.1
Unique NamemRNA_H-canaliculatus_F_contig10064.96.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
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BLAST of mRNA_H-canaliculatus_F_contig10064.96.1 vs. uniprot
Match: A0A6H5KT18_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KT18_9PHAE)

HSP 1 Score: 211 bits (538), Expect = 9.870e-60
Identity = 117/139 (84.17%), Postives = 122/139 (87.77%), Query Frame = 1 
Query:  172 SNRLIEGAVPTEFAGRSWDGYLHHVDFIVALMHVGTSLIPKSLMKLIEHVVGYTPSFDKGLSLLSSCCRTKGMRRPCAGAVLELLVFRELKREAKLMKAAKGAPKPSSSRVSQNGDNASAAVSGKRGFRRRIQFRQAAA 588
            S RLIEGAVPTEFAGR W GYLHHVDFIVALMHVGTSL+PK L+KLIE +VGY PSFDKGLSLLS CC TKGMRRPCA AVLELLVFRELKRE KLMKAAK A KP+SSRV QNG + SA VSGKRGFRRRIQF QAAA
Sbjct: 1889 SYRLIEGAVPTEFAGRDWVGYLHHVDFIVALMHVGTSLMPKGLVKLIEQMVGYAPSFDKGLSLLSGCCSTKGMRRPCAVAVLELLVFRELKRETKLMKAAK-AVKPASSRVPQNGGDDSA-VSGKRGFRRRIQFGQAAA 2025
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BLAST of mRNA_H-canaliculatus_F_contig10064.96.1 vs. uniprot
Match: D7FMA1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FMA1_ECTSI)

HSP 1 Score: 164 bits (416), Expect = 2.380e-43
Identity = 80/89 (89.89%), Postives = 82/89 (92.13%), Query Frame = 1 
Query:  172 SNRLIEGAVPTEFAGRSWDGYLHHVDFIVALMHVGTSLIPKSLMKLIEHVVGYTPSFDKGLSLLSSCCRTKGMRRPCAGAVLELLVFRE 438
            S RLIEGAVPTEFAGR W GYLHHVDFIVALMHVGTSL+PK L+KLIEHVVGYTPSFDKGLSLLS CC TKGMRRPCA AVLELLVFRE
Sbjct: 1595 SYRLIEGAVPTEFAGRDWVGYLHHVDFIVALMHVGTSLMPKGLVKLIEHVVGYTPSFDKGLSLLSGCCSTKGMRRPCAVAVLELLVFRE 1683
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig10064.96.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KT18_9PHAE9.870e-6084.17Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FMA1_ECTSI2.380e-4389.89Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig10064contigH-canaliculatus_F_contig10064:1698..3303 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size611
Cds size609
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig10064.96.1prot_H-canaliculatus_F_contig10064.96.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig10064 1698..3301 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928634.3063478-CDS-H-canaliculatus_F_contig10064:1697..20031622928634.3063478-CDS-H-canaliculatus_F_contig10064:1697..2003Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10064 1698..2003 +
1696845505.345571-CDS-H-canaliculatus_F_contig10064:1697..20031696845505.345571-CDS-H-canaliculatus_F_contig10064:1697..2003Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10064 1698..2003 +
1622928634.317436-CDS-H-canaliculatus_F_contig10064:2393..25251622928634.317436-CDS-H-canaliculatus_F_contig10064:2393..2525Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10064 2394..2525 +
1696845505.357502-CDS-H-canaliculatus_F_contig10064:2393..25251696845505.357502-CDS-H-canaliculatus_F_contig10064:2393..2525Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10064 2394..2525 +
1622928634.3259952-CDS-H-canaliculatus_F_contig10064:3130..33011622928634.3259952-CDS-H-canaliculatus_F_contig10064:3130..3301Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10064 3131..3301 +
1696845505.3677902-CDS-H-canaliculatus_F_contig10064:3130..33011696845505.3677902-CDS-H-canaliculatus_F_contig10064:3130..3301Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10064 3131..3301 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig10064.96.1

>prot_H-canaliculatus_F_contig10064.96.1 ID=prot_H-canaliculatus_F_contig10064.96.1|Name=mRNA_H-canaliculatus_F_contig10064.96.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=203bp
ANDAAAAAAARINGDSGVVVVVNGRRDSGRWSSSSAAAKMVNGNGGGGGA
ATAAEEESNRLIEGAVPTEFAGRSWDGYLHHVDFIVALMHVGTSLIPKSL
MKLIEHVVGYTPSFDKGLSLLSSCCRTKGMRRPCAGAVLELLVFRELKRE
AKLMKAAKGAPKPSSSRVSQNGDNASAAVSGKRGFRRRIQFRQAAAGGGR
GGG
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mRNA from alignment at H-canaliculatus_F_contig10064:1698..3303+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig10064.96.1 ID=mRNA_H-canaliculatus_F_contig10064.96.1|Name=mRNA_H-canaliculatus_F_contig10064.96.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=1606bp|location=Sequence derived from alignment at H-canaliculatus_F_contig10064:1698..3303+ (Hapterophycus canaliculatus Oshoro5f female)
GCAAACGATGCCGCTGCCGCCGCCGCCGCAAGGATCAACGGCGACAGCGG
CGTGGTCGTGGTCGTGAACGGGCGGAGGGATAGCGGGCGTTGGTCGTCCT
CGTCGGCAGCGGCGAAGATGGTCAACGGGAACGGCGGCGGCGGCGGGGCG
GCGACGGCGGCGGAAGAGGAGAGCAACCGATTGATAGAGGGGGCTGTTCC
CACGGAGTTCGCCGGCAGGAGTTGGGACGGGTACCTGCACCACGTGGATT
TTATCGTGGCGCTGATGCACGTGGGCACCTCGCTGATACCAAAGAGCTTG
ATGAAGGTAGGCGTTACCGGTGCTGGTGCTGGTGCTGGTGCTGGTGCCGT
TGGTGATGCAACTCCGTGGAGGGGTAGTGCACGCTGCTTGCCCTTCATCC
TGCGAAGGAGCAAGGGTTGGTGTAGCCCGTCGGGAGCGTTGGGCACGCTG
TCGTTTTGCTTGTCCGCCCGACCGTTCGTGCGTGGACTACTTGTCCGGGT
TACGCGACCTAGGGCGACCTCGGAATGCAGCACGCGGTGGCTTGTGTAAA
CAAACGTTTCTTTAGCCTGCTTTGCCTTTTGATACTTGGAACCCCTCAGA
TTACGCGGTGTGCCCGTCGATATCTAAGTTCCCCCCCCCCTCCTCTGCCC
CCTCCCCTGCGTTCCTTTGGTTATTCCCATGGCATGCAACGCTCAGCTTA
TCGAGCACGTCGTTGGCTACACCCCGTCCTTCGACAAGGGTCTGAGCCTC
CTGTCTAGCTGCTGTCGGACAAAGGGCATGCGACGGCCGTGTGCCGGTGC
TGTCCTGGAGCTGCTGGTCTTCCGAGAGGTACGCGTTGGAGTAAAACCGC
AACCCTTTGCCGCGCTTGCTGGCGCCGTTCACTGTGAGTTCGTGTCGGAG
ATGTGTCGGAGATGTGTCGGAGACGTCTGGTGTTACCGCGGTGTTTGTTG
CGTATTGATGGTCGTCGTCGTCGTCGTCGTCGGTTGGGAGGGGGTCGGAT
GCTCTTCCGATTGGGAATGCTTTATCCATCCAGGAGTCAGGACAGCTGTA
GAGAGCGGTTCCATCGTACTTCTCTATCTATCTATCAGAGTATGTTCGTT
GCCAAGAAGAAGGCCGATGAGGGTTACACGTACGAGTAGACCATTGAGAA
TTTCTCACATTTGGCTGAACTCCCGCGGGGTTCTGTTCCTTCCCACCTCA
GACTGGTGCGTCAATACAGCAGTCTACCAAGATTGTACACTAACGTGCAC
GTTGACTTGGTAGATGAAAGCAAGACCAACGAAAAAGCGGTTATCCACCG
GATCACGTGAGTGCCTAATCACCGCCATCGCCACGACCACGACCACGACC
CACGACTCACCGCCCACAACCACAACCACAACCACCCGCGTGCCCTTCCC
TCCTTCCTTCGGTCTTGACTGTCGGATGATCAGCTGAAGCGAGAGGCGAA
GCTCATGAAGGCCGCAAAGGGGGCTCCCAAGCCCTCCAGTTCTCGCGTCT
CCCAAAACGGGGACAACGCCTCCGCCGCCGTCAGCGGCAAGAGGGGTTTC
CGGAGACGCATCCAGTTCCGACAGGCGGCGGCGGGCGGGGGTAGGGGCGG
CGGCGG
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig10064:1698..3303+

>mRNA_H-canaliculatus_F_contig10064.96.1 ID=mRNA_H-canaliculatus_F_contig10064.96.1|Name=mRNA_H-canaliculatus_F_contig10064.96.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=1218bp|location=Sequence derived from alignment at H-canaliculatus_F_contig10064:1698..3303+ (Hapterophycus canaliculatus Oshoro5f female)
GCAAACGATGCCGCTGCCGCCGCCGCCGCAAGGATCAACGGCGACAGCGG
CGTGGTCGTGGTCGTGAACGGGCGGAGGGATAGCGGGCGTTGGTCGTCCT
CGTCGGCAGCGGCGAAGATGGTCAACGGGAACGGCGGCGGCGGCGGGGCG
GCGACGGCGGCGGAAGAGGAGAGCAACCGATTGATAGAGGGGGCTGTTCC
CACGGAGTTCGCCGGCAGGAGTTGGGACGGGTACCTGCACCACGTGGATT
TTATCGTGGCGCTGATGCACGTGGGCACCTCGCTGATACCAAAGAGCTTG
ATGAAGGCAAACGATGCCGCTGCCGCCGCCGCCGCAAGGATCAACGGCGA
CAGCGGCGTGGTCGTGGTCGTGAACGGGCGGAGGGATAGCGGGCGTTGGT
CGTCCTCGTCGGCAGCGGCGAAGATGGTCAACGGGAACGGCGGCGGCGGC
GGGGCGGCGACGGCGGCGGAAGAGGAGAGCAACCGATTGATAGAGGGGGC
TGTTCCCACGGAGTTCGCCGGCAGGAGTTGGGACGGGTACCTGCACCACG
TGGATTTTATCGTGGCGCTGATGCACGTGGGCACCTCGCTGATACCAAAG
AGCTTGATGAAGCTTATCGAGCACGTCGTTGGCTACACCCCGTCCTTCGA
CAAGGGTCTGAGCCTCCTGTCTAGCTGCTGTCGGACAAAGGGCATGCGAC
GGCCGTGTGCCGGTGCTGTCCTGGAGCTGCTGGTCTTCCGAGAGCTTATC
GAGCACGTCGTTGGCTACACCCCGTCCTTCGACAAGGGTCTGAGCCTCCT
GTCTAGCTGCTGTCGGACAAAGGGCATGCGACGGCCGTGTGCCGGTGCTG
TCCTGGAGCTGCTGGTCTTCCGAGAGCTGAAGCGAGAGGCGAAGCTCATG
AAGGCCGCAAAGGGGGCTCCCAAGCCCTCCAGTTCTCGCGTCTCCCAAAA
CGGGGACAACGCCTCCGCCGCCGTCAGCGGCAAGAGGGGTTTCCGGAGAC
GCATCCAGTTCCGACAGGCGGCGGCGGGCGGGGGTAGGGGCGGCGGCCTG
AAGCGAGAGGCGAAGCTCATGAAGGCCGCAAAGGGGGCTCCCAAGCCCTC
CAGTTCTCGCGTCTCCCAAAACGGGGACAACGCCTCCGCCGCCGTCAGCG
GCAAGAGGGGTTTCCGGAGACGCATCCAGTTCCGACAGGCGGCGGCGGGC
GGGGGTAGGGGCGGCGGC
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