mRNA_H-canaliculatus_F_contig10062.95.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig10062.95.1
Unique NamemRNA_H-canaliculatus_F_contig10062.95.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig10062.95.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig10062contigH-canaliculatus_F_contig10062:1212..3540 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons6
Model size932
Cds size696
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928634.2044728-CDS-H-canaliculatus_F_contig10062:1211..12981622928634.2044728-CDS-H-canaliculatus_F_contig10062:1211..1298Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10062 1212..1298 -
1696845505.256376-CDS-H-canaliculatus_F_contig10062:1211..12981696845505.256376-CDS-H-canaliculatus_F_contig10062:1211..1298Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10062 1212..1298 -
1622928634.2193222-CDS-H-canaliculatus_F_contig10062:1489..16181622928634.2193222-CDS-H-canaliculatus_F_contig10062:1489..1618Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10062 1490..1618 -
1696845505.2667356-CDS-H-canaliculatus_F_contig10062:1489..16181696845505.2667356-CDS-H-canaliculatus_F_contig10062:1489..1618Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10062 1490..1618 -
1622928634.2285933-CDS-H-canaliculatus_F_contig10062:1779..19081622928634.2285933-CDS-H-canaliculatus_F_contig10062:1779..1908Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10062 1780..1908 -
1696845505.2755115-CDS-H-canaliculatus_F_contig10062:1779..19081696845505.2755115-CDS-H-canaliculatus_F_contig10062:1779..1908Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10062 1780..1908 -
1622928634.2418172-CDS-H-canaliculatus_F_contig10062:2289..26401622928634.2418172-CDS-H-canaliculatus_F_contig10062:2289..2640Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10062 2290..2640 -
1696845505.2835963-CDS-H-canaliculatus_F_contig10062:2289..26401696845505.2835963-CDS-H-canaliculatus_F_contig10062:2289..2640Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10062 2290..2640 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928634.251969-UTR-H-canaliculatus_F_contig10062:2640..26921622928634.251969-UTR-H-canaliculatus_F_contig10062:2640..2692Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig10062 2641..2692 -
1696845505.2937653-UTR-H-canaliculatus_F_contig10062:2640..26921696845505.2937653-UTR-H-canaliculatus_F_contig10062:2640..2692Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig10062 2641..2692 -
1622928634.2613761-UTR-H-canaliculatus_F_contig10062:2889..29221622928634.2613761-UTR-H-canaliculatus_F_contig10062:2889..2922Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig10062 2890..2922 -
1696845505.3236053-UTR-H-canaliculatus_F_contig10062:2889..29221696845505.3236053-UTR-H-canaliculatus_F_contig10062:2889..2922Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig10062 2890..2922 -
1622928634.2707725-UTR-H-canaliculatus_F_contig10062:3389..35401622928634.2707725-UTR-H-canaliculatus_F_contig10062:3389..3540Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig10062 3390..3540 -
1696845505.3357391-UTR-H-canaliculatus_F_contig10062:3389..35401696845505.3357391-UTR-H-canaliculatus_F_contig10062:3389..3540Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig10062 3390..3540 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig10062.95.1prot_H-canaliculatus_F_contig10062.95.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig10062 1212..2640 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig10062.95.1

>prot_H-canaliculatus_F_contig10062.95.1 ID=prot_H-canaliculatus_F_contig10062.95.1|Name=mRNA_H-canaliculatus_F_contig10062.95.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=232bp
MFFGSAGMRANKLLEGADAAFAKQSHRAAVASMESAICTGCVREVKTIMA
ILGNMGKASIIKELTGCYGGTRGHPPRADDNGLFRMSVPLLHASLTGSVE
VFLAVLGAMRVHLRPQQVKRAMTVRDGHGRSTLTTALASKSKDAFEAVLT
SLEEDLTKDEVQELLLGSDAEGQKILHWAAATGSKDTFEAVLAALSNRLS
KGQVEGLLAASTAAASDDIFCEIRTLLNSAAS
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mRNA from alignment at H-canaliculatus_F_contig10062:1212..3540-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig10062.95.1 ID=mRNA_H-canaliculatus_F_contig10062.95.1|Name=mRNA_H-canaliculatus_F_contig10062.95.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=2329bp|location=Sequence derived from alignment at H-canaliculatus_F_contig10062:1212..3540- (Hapterophycus canaliculatus Oshoro5f female)
AGGGCTAGTGCACCAGAACTAGGTGATATCACCACGTTCACGAGCCAGGA
CTTTGCGCCGGAGGCAGATAACTACGAGTTCACCGATCTTGATGGGGCAT
GGAGTTCACCCAACGCCAGCTTCCAAGACATGTCGGGCTCATTTCACGAG
GGTACGGGCGAATGATTGGCGTCTCCTTCAACTCGCCATGCGGAGGAAAG
CCCTTTATTTTATCGTTGTAGCATTTGCGAAGGCGCAGGAAGAGGAGCTG
TGAGGGCGCCACACGAAGGGCATATTGACGCACGTCGAAGTGATGGGTTG
TCTTGCGCCTGACGGAACAGGCTATATCGCAACTAAGCATATTTGCGGTG
TTTCCCAGCTGACTACCCTTAGACTCAAAGTTGCAAGAACTAGATGTTGG
AACCCTTGGCTTCCTATGATGTGCGTTGGTGCTGCGGGCCGGTTGTGTGT
TGTGCGTTCTCACTGTCGTCAAGATTTACTCCATGTGTTGCGCTATCAGC
CCCGCGTCCAAGCCTCAAGGCATCCATGTAGCGAAAGCCTCCGAGGAATA
ATCATTGAGCTTTAAAAGTACCTGCATTCCTCGTCTTTTTCGCTTTTCTT
CATTTCTGGGCTTGTCAGGAGATTTCGCTGGCGAGTACAGCCTGCCTGAA
GGTGAGACGTAAATGGAGGTATAACCTTCGTCTGTTATGTAAACTGGTCC
TGCCCCAAATGAAATCGGTATTACTTTGCATCGGCAAAAACGAGTCAGAT
CATCTACGCCCGTCTCCGGCATTGCCGCGACGATTTTCATACACGTCGTA
CACCACCCGACATTTCAAGGCTTGTGTGCATTGCACATGTGCGAGTAGGT
CAAACGGCTGGTTCACGCGGAGGGATCTTCCTGCAGCATGAATTCCCTCT
ATGTTCTTCGGTTCCGCTGGAATGAGAGCGAACAAGTTGCTGGAGGGGGC
TGACGCAGCGTTCGCGAAACAATCGCACCGGGCAGCCGTGGCGTCCATGG
AATCTGCGATCTGCACCGGCTGCGTGAGGGAAGTAAAAACTATTATGGCC
ATTTTGGGAAATATGGGCAAGGCCTCGATAATCAAGGAGCTCACAGGATG
CTACGGGGGCACAAGAGGGCATCCCCCACGAGCAGATGATAATGGGCTTT
TCCGGATGTCAGTGCCGCTTCTCCACGCCTCGTTGACCGGGAGTGTTGAA
GTCTTTTTGGCTGTGCTCGGTGCGATGCGGGTCCACCTGAGGCCTCAGCA
GGCAAGTGCGCTTGGATCAGTGGTTATCAAGTCTGCTAGTCTGGGCGTGT
GCACCAGGTGTTGGGAATCGAGAAGCATGTTCCTGTGTAAGGTCGCACGT
CTCCGATGTTACCGAAGACGCATGCAGGTGACACGGTTAGACGCTTCCTC
ATATTTGCTTACAAAATGGCGAATTCCGCGCGTGCTTTTGCTTGGCTTCC
ACGCGTTTGTAGTGTTCCAATTTTTTTCTTCGCTGAGTTATACCCTTGTG
CTCACTGGACTTGCAAAACCGTTGGCACCCAGAGGAAACTCAGATAATCT
CACACCTGGTACATGCTCATCTCTTTGATGCGAGGTCGACGTCTCCCCAG
CCTGATACTCTCGTGTTCGACCTGATCATCAGGTCAAGCGAGCAATGACG
GTAAGGGACGGGCATGGGCGTTCAACGCTGACCACGGCCCTGGCGAGCAA
GAGCAAGGATGCATTTGAGGCCGTTTTGACGTCTTTGGAAGAAGACCTGA
CGAAGGATGAGGTACAAATGTCTGCGACTGTTTTTCTCTCGAATGCCGCG
AGTGTGCGGCTTGACGATTTCCCTCATCACCTACATGATCGATCCCACTT
TTCGCGCTTGCCCAGGTGTGTCAAACCTGATTGTGCTTTACCATCCTCGC
TGCTGTCCGTACGCGGTTCCAGGTTCAGGAATTGCTACTGGGCTCTGATG
CCGAGGGCCAGAAGATTCTTCACTGGGCAGCCGCAACTGGAAGCAAGGAC
ACATTCGAGGCTGTGCTGGCAGCTCTAAGCAATCGGTTGAGTAAAGGGCA
GGTGCGGCATCCCAACGCCATGACGCGTGCTGGCCAATCTCGCACAGTAT
TTGCCGACGGCCAGGGTGTGCTTTTGTCGCGAACCGTTTGCGCTTCCCTC
CCATGTGCGAGCCTTTCGTGCTTTGTCATGCCGGACATGAACTCGACTGC
AGCGCCAACGAATGGTCGGCATCCGTTTGCTTGTGTCCTTAGGTGGAAGG
TCTCTTAGCAGCGTCCACTGCAGCTGCCAGTGATGACATATTTTGCGAAA
TCCGAACCCTCCTAAACTCGGCGGCCAGC
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig10062:1212..3540-

>mRNA_H-canaliculatus_F_contig10062.95.1 ID=mRNA_H-canaliculatus_F_contig10062.95.1|Name=mRNA_H-canaliculatus_F_contig10062.95.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=1392bp|location=Sequence derived from alignment at H-canaliculatus_F_contig10062:1212..3540- (Hapterophycus canaliculatus Oshoro5f female)
ATGTTCTTCGGTTCCGCTGGAATGAGAGCGAACAAGTTGCTGGAGGGGGC
TGACGCAGCGTTCGCGAAACAATCGCACCGGGCAGCCGTGGCGTCCATGG
AATCTGCGATCTGCACCGGCTGCGTGAGGGAAGTAAAAACTATTATGGCC
ATTTTGGGAAATATGGGCAAGGCCTCGATAATCAAGGAGCTCACAGGATG
CTACGGGGGCACAAGAGGGCATCCCCCACGAGCAGATGATAATGGGCTTT
TCCGGATGTCAGTGCCGCTTCTCCACGCCTCGTTGACCGGGAGTGTTGAA
GTCTTTTTGGCTGTGCTCGGTGCGATGCGGGTCCACCTGAGGCCTCAGCA
GATGTTCTTCGGTTCCGCTGGAATGAGAGCGAACAAGTTGCTGGAGGGGG
CTGACGCAGCGTTCGCGAAACAATCGCACCGGGCAGCCGTGGCGTCCATG
GAATCTGCGATCTGCACCGGCTGCGTGAGGGAAGTAAAAACTATTATGGC
CATTTTGGGAAATATGGGCAAGGCCTCGATAATCAAGGAGCTCACAGGAT
GCTACGGGGGCACAAGAGGGCATCCCCCACGAGCAGATGATAATGGGCTT
TTCCGGATGTCAGTGCCGCTTCTCCACGCCTCGTTGACCGGGAGTGTTGA
AGTCTTTTTGGCTGTGCTCGGTGCGATGCGGGTCCACCTGAGGCCTCAGC
AGGTCAAGCGAGCAATGACGGTAAGGGACGGGCATGGGCGTTCAACGCTG
ACCACGGCCCTGGCGAGCAAGAGCAAGGATGCATTTGAGGCCGTTTTGAC
GTCTTTGGAAGAAGACCTGACGAAGGATGAGGTCAAGCGAGCAATGACGG
TAAGGGACGGGCATGGGCGTTCAACGCTGACCACGGCCCTGGCGAGCAAG
AGCAAGGATGCATTTGAGGCCGTTTTGACGTCTTTGGAAGAAGACCTGAC
GAAGGATGAGGTTCAGGAATTGCTACTGGGCTCTGATGCCGAGGGCCAGA
AGATTCTTCACTGGGCAGCCGCAACTGGAAGCAAGGACACATTCGAGGCT
GTGCTGGCAGCTCTAAGCAATCGGTTGAGTAAAGGGCAGGTTCAGGAATT
GCTACTGGGCTCTGATGCCGAGGGCCAGAAGATTCTTCACTGGGCAGCCG
CAACTGGAAGCAAGGACACATTCGAGGCTGTGCTGGCAGCTCTAAGCAAT
CGGTTGAGTAAAGGGCAGGTGGAAGGTCTCTTAGCAGCGTCCACTGCAGC
TGCCAGTGATGACATATTTTGCGAAATCCGAACCCTCCTAAACTCGGCGG
CCAGCGTGGAAGGTCTCTTAGCAGCGTCCACTGCAGCTGCCAGTGATGAC
ATATTTTGCGAAATCCGAACCCTCCTAAACTCGGCGGCCAGC
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