mRNA_H-canaliculatus_F_contig10062.94.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig10062.94.1
Unique NamemRNA_H-canaliculatus_F_contig10062.94.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
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BLAST of mRNA_H-canaliculatus_F_contig10062.94.1 vs. uniprot
Match: D7G2I0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G2I0_ECTSI)

HSP 1 Score: 70.9 bits (172), Expect = 2.140e-12
Identity = 36/57 (63.16%), Postives = 44/57 (77.19%), Query Frame = 1 
Query:    1 QVKRIMIYQDMGFQENVLLSAIKSGSLDDFSAVLSSVSNRLTPQEVTDLILRADEGK 171
            QVKR+MIYQDM  QEN+L SAI S S + F  VLSSV++RLTP E  + +LRAD+GK
Sbjct:  149 QVKRMMIYQDMDLQENLLHSAINSRSTNAFDTVLSSVTSRLTPTEARNFLLRADDGK 205
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BLAST of mRNA_H-canaliculatus_F_contig10062.94.1 vs. uniprot
Match: D7FLB1_ECTSI (Ankyrin Repeat Transient Receptor Potential Channel n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FLB1_ECTSI)

HSP 1 Score: 70.9 bits (172), Expect = 2.250e-12
Identity = 36/57 (63.16%), Postives = 44/57 (77.19%), Query Frame = 1 
Query:    1 QVKRIMIYQDMGFQENVLLSAIKSGSLDDFSAVLSSVSNRLTPQEVTDLILRADEGK 171
            QVKR+MIYQDM  QEN+L SAI S S + F  VLSSV++RLTP E  + +LRAD+GK
Sbjct:  193 QVKRMMIYQDMDLQENLLHSAINSRSTNAFDTVLSSVTSRLTPTEARNFLLRADDGK 249
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig10062.94.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7G2I0_ECTSI2.140e-1263.16Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7FLB1_ECTSI2.250e-1263.16Ankyrin Repeat Transient Receptor Potential Channe... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig10062contigH-canaliculatus_F_contig10062:416..892 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score63.2
Seed ortholog evalue6.7e-08
Seed eggNOG ortholog2880.D7FLB1
KEGG koko:K04981
KEGG TC1.A.4.5.8
KEGG Pathwayko04978,map04978
EggNOG free text desc.ion channel activity
EggNOG OGsKOG3614@1,KOG3614@2759
EC2.7.11.1
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko01001,ko04040
Hectar predicted targeting categoryother localisation
Exons2
Model size261
Cds size246
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig10062.94.1prot_H-canaliculatus_F_contig10062.94.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig10062 416..877 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928634.148415-CDS-H-canaliculatus_F_contig10062:415..5411622928634.148415-CDS-H-canaliculatus_F_contig10062:415..541Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10062 416..541 -
1696845505.2138832-CDS-H-canaliculatus_F_contig10062:415..5411696845505.2138832-CDS-H-canaliculatus_F_contig10062:415..541Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10062 416..541 -
1622928634.1583245-CDS-H-canaliculatus_F_contig10062:757..8771622928634.1583245-CDS-H-canaliculatus_F_contig10062:757..877Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10062 758..877 -
1696845505.2340624-CDS-H-canaliculatus_F_contig10062:757..8771696845505.2340624-CDS-H-canaliculatus_F_contig10062:757..877Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10062 758..877 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928634.1687868-UTR-H-canaliculatus_F_contig10062:877..8921622928634.1687868-UTR-H-canaliculatus_F_contig10062:877..892Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig10062 878..892 -
1696845505.2454574-UTR-H-canaliculatus_F_contig10062:877..8921696845505.2454574-UTR-H-canaliculatus_F_contig10062:877..892Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig10062 878..892 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig10062.94.1

>prot_H-canaliculatus_F_contig10062.94.1 ID=prot_H-canaliculatus_F_contig10062.94.1|Name=mRNA_H-canaliculatus_F_contig10062.94.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=82bp
MIYQDMGFQENVLLSAIKSGSLDDFSAVLSSVSNRLTPQEVTDLILRADE
GKNILHAAAEGGSKDVFEAVLRALQREVDAEK
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mRNA from alignment at H-canaliculatus_F_contig10062:416..892-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig10062.94.1 ID=mRNA_H-canaliculatus_F_contig10062.94.1|Name=mRNA_H-canaliculatus_F_contig10062.94.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=477bp|location=Sequence derived from alignment at H-canaliculatus_F_contig10062:416..892- (Hapterophycus canaliculatus Oshoro5f female)
CAGGTGAAGCGCATTATGATCTACCAGGACATGGGCTTCCAGGAAAACGT
CTTACTTTCTGCAATCAAGAGCGGGAGCCTGGATGATTTCAGTGCCGTAC
TATCTTCTGTGTCAAACCGCCTCACTCCACAGGAGGTACGACGTGCCGTT
GTATCCGCATGCTACTCGGTGTGCCGTCGAAGGCCTCTGAAGTGTCTCGG
TTTTATGATCGCTGTGTCCTGCTTTTTTTCGATTCACCAGCACCCTCCGA
CACCTCGACGATGTCCCCGCTCGTGGTGGGTACCGGGGCAGCCCTGTTCT
CAATGTGCGTCTCGGTCTATTCGTCTAAACCTAAACACCCTTCCTGACCA
GGTCACCGATCTCATCCTTCGTGCGGATGAGGGCAAGAATATCCTGCATG
CAGCGGCGGAGGGCGGTAGCAAGGACGTCTTTGAAGCCGTGCTACGTGCT
CTACAGCGAGAGGTGGATGCAGAGAAG
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig10062:416..892-

>mRNA_H-canaliculatus_F_contig10062.94.1 ID=mRNA_H-canaliculatus_F_contig10062.94.1|Name=mRNA_H-canaliculatus_F_contig10062.94.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=492bp|location=Sequence derived from alignment at H-canaliculatus_F_contig10062:416..892- (Hapterophycus canaliculatus Oshoro5f female)
ATGATCTACCAGGACATGGGCTTCCAGGAAAACGTCTTACTTTCTGCAAT
CAAGAGCGGGAGCCTGGATGATTTCAGTGCCGTACTATCTTCTGTGTCAA
ACCGCCTCACTCCACAGGAGATGATCTACCAGGACATGGGCTTCCAGGAA
AACGTCTTACTTTCTGCAATCAAGAGCGGGAGCCTGGATGATTTCAGTGC
CGTACTATCTTCTGTGTCAAACCGCCTCACTCCACAGGAGGTCACCGATC
TCATCCTTCGTGCGGATGAGGGCAAGAATATCCTGCATGCAGCGGCGGAG
GGCGGTAGCAAGGACGTCTTTGAAGCCGTGCTACGTGCTCTACAGCGAGA
GGTGGATGCAGAGAAGGTCACCGATCTCATCCTTCGTGCGGATGAGGGCA
AGAATATCCTGCATGCAGCGGCGGAGGGCGGTAGCAAGGACGTCTTTGAA
GCCGTGCTACGTGCTCTACAGCGAGAGGTGGATGCAGAGAAG
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