mRNA_H-canaliculatus_F_contig11009.934.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig11009.934.1
Unique NamemRNA_H-canaliculatus_F_contig11009.934.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
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BLAST of mRNA_H-canaliculatus_F_contig11009.934.1 vs. uniprot
Match: NU3M_EMEND (NADH-ubiquinone oxidoreductase chain 3 n=34 Tax=cellular organisms TaxID=131567 RepID=NU3M_EMEND)

HSP 1 Score: 228 bits (580), Expect = 6.710e-75
Identity = 121/134 (90.30%), Postives = 128/134 (95.52%), Query Frame = 1 
Query:    1 MTTTTFFLFLIPVLGIILLLVNLILSPHNPYQEKDSAFECGFHSFLGQNRTQFSISFFIFALLFLLFDLEILLIYPYVVSAYTNGIYGLLVMIVFFLVLTLGFAFELGKNALKIESRQIFNFNIKS*NGYSLIY 402
            MTTTTFFLFLIPVL IILL VNLI SPHNPYQEKDSAFECGFHSFLGQNRTQFSISFFIFALLFLLFDLEILL+YPYVVSAYTNGIYGL++M+VFFLV TLGFAFELGKNALKIESRQ++NFN KS +GYSLIY
Sbjct:    1 MTTTTFFLFLIPVLAIILLAVNLIFSPHNPYQEKDSAFECGFHSFLGQNRTQFSISFFIFALLFLLFDLEILLVYPYVVSAYTNGIYGLVIMLVFFLVGTLGFAFELGKNALKIESRQVYNFNYKSWSGYSLIY 134
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BLAST of mRNA_H-canaliculatus_F_contig11009.934.1 vs. uniprot
Match: A0A4P2W1Z1_MONPU (NADH-ubiquinone oxidoreductase chain 3 n=2 Tax=cellular organisms TaxID=131567 RepID=A0A4P2W1Z1_MONPU)

HSP 1 Score: 222 bits (566), Expect = 9.130e-73
Identity = 114/134 (85.07%), Postives = 128/134 (95.52%), Query Frame = 1 
Query:    1 MTTTTFFLFLIPVLGIILLLVNLILSPHNPYQEKDSAFECGFHSFLGQNRTQFSISFFIFALLFLLFDLEILLIYPYVVSAYTNGIYGLLVMIVFFLVLTLGFAFELGKNALKIESRQIFNFNIKS*NGYSLIY 402
            M++TTFFLFLIP+L I+LL +NLILSPHNPYQEKDSAFECGFHSFLGQNRTQFSISFFIFALLFLLFDLEILL+YPYVVSAYTNGIYGL++M++FF+ LTLGFAFELGKNALKIESRQ+++FN KS  GYSLIY
Sbjct:    1 MSSTTFFLFLIPILAILLLAINLILSPHNPYQEKDSAFECGFHSFLGQNRTQFSISFFIFALLFLLFDLEILLVYPYVVSAYTNGIYGLVIMLLFFIALTLGFAFELGKNALKIESRQVYSFNFKSWKGYSLIY 134
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BLAST of mRNA_H-canaliculatus_F_contig11009.934.1 vs. uniprot
Match: G8I2R5_9EURO (NADH-ubiquinone oxidoreductase chain 3 n=5 Tax=leotiomyceta TaxID=716546 RepID=G8I2R5_9EURO)

HSP 1 Score: 217 bits (553), Expect = 4.850e-71
Identity = 115/118 (97.46%), Postives = 117/118 (99.15%), Query Frame = 1 
Query:   52 LLLVNLILSPHNPYQEKDSAFECGFHSFLGQNRTQFSISFFIFALLFLLFDLEILLIYPYVVSAYTNGIYGLLVMIVFFLVLTLGFAFELGKNALKIESRQIFNFNIKS*NGYSLIYK 405
            +LLVNLILSPHNPYQEKDSAFECGFHSFLGQNRTQFSISFFIFALLFLLFDLEILLIYPYVVSAYTNGIYGLL+MIVFFLVLTLGFAFELGKNALKIESRQIFNFNIKS NGYSLIYK
Sbjct:    1 MLLVNLILSPHNPYQEKDSAFECGFHSFLGQNRTQFSISFFIFALLFLLFDLEILLIYPYVVSAYTNGIYGLLIMIVFFLVLTLGFAFELGKNALKIESRQIFNFNIKSWNGYSLIYK 118
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BLAST of mRNA_H-canaliculatus_F_contig11009.934.1 vs. uniprot
Match: M4GGS3_TALMQ (NADH-ubiquinone oxidoreductase chain 3 n=3 Tax=Talaromyces sect. Talaromyces TaxID=2752537 RepID=M4GGS3_TALMQ)

HSP 1 Score: 217 bits (552), Expect = 1.200e-70
Identity = 116/134 (86.57%), Postives = 124/134 (92.54%), Query Frame = 1 
Query:    1 MTTTTFFLFLIPVLGIILLLVNLILSPHNPYQEKDSAFECGFHSFLGQNRTQFSISFFIFALLFLLFDLEILLIYPYVVSAYTNGIYGLLVMIVFFLVLTLGFAFELGKNALKIESRQIFNFNIKS*NGYSLIY 402
            MTTTTFFLFLIPVL +ILL VNLILSPHN Y EKDSAFECGFHSFLGQNRTQFSISFFIFALLFLLFDLEILL+YPY+VSAYTNGIYGL +M++FFLVLTLGFAFELGKNALKIESRQ+ N + K  NGYSLIY
Sbjct:    1 MTTTTFFLFLIPVLAVILLAVNLILSPHNSYIEKDSAFECGFHSFLGQNRTQFSISFFIFALLFLLFDLEILLVYPYIVSAYTNGIYGLSIMLLFFLVLTLGFAFELGKNALKIESRQVHNLDYKLWNGYSLIY 134
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BLAST of mRNA_H-canaliculatus_F_contig11009.934.1 vs. uniprot
Match: C5HA24_TRIRU (NADH-ubiquinone oxidoreductase chain 3 n=6 Tax=Arthrodermataceae TaxID=34384 RepID=C5HA24_TRIRU)

HSP 1 Score: 210 bits (534), Expect = 6.450e-68
Identity = 108/134 (80.60%), Postives = 123/134 (91.79%), Query Frame = 1 
Query:    1 MTTTTFFLFLIPVLGIILLLVNLILSPHNPYQEKDSAFECGFHSFLGQNRTQFSISFFIFALLFLLFDLEILLIYPYVVSAYTNGIYGLLVMIVFFLVLTLGFAFELGKNALKIESRQIFNFNIKS*NGYSLIY 402
            MT+TTFF   IP+L  +LL++NL+LS HNPYQEKDSAFECGFHSFLGQNRTQFSISFFIFALLFLLFDLEILL+YPYVVSAY N +YGL++M+VFFLVLTLGFAFELGKNALKI+S+Q++NFN K  NGYSLIY
Sbjct:    1 MTSTTFFFLFIPILACVLLVINLLLSVHNPYQEKDSAFECGFHSFLGQNRTQFSISFFIFALLFLLFDLEILLVYPYVVSAYFNNLYGLIIMLVFFLVLTLGFAFELGKNALKIDSKQMYNFNTKIWNGYSLIY 134
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BLAST of mRNA_H-canaliculatus_F_contig11009.934.1 vs. uniprot
Match: A0A6H1XFD3_PENCI (NADH-ubiquinone oxidoreductase chain 3 n=1 Tax=Penicillium citrinum TaxID=5077 RepID=A0A6H1XFD3_PENCI)

HSP 1 Score: 202 bits (514), Expect = 7.430e-65
Identity = 111/134 (82.84%), Postives = 119/134 (88.81%), Query Frame = 1 
Query:    1 MTTTTFFLFLIPVLGIILLLVNLILSPHNPYQEKDSAFECGFHSFLGQNRTQFSISFFIFALLFLLFDLEILLIYPYVVSAYTNGIYGLLVMIVFFLVLTLGFAFELGKNALKIESRQIFNFNIKS*NGYSLIY 402
            MT TTFFLFLIPVLGI+LLLVNLI SP N Y EKDSAFECGFHSFLGQNRTQF ISFF+FALLFLLFDLEILL+YPYVVSAYTNGIYGL++ +VF LVLTLGFAFELGKNALKIESRQ  +FN +S   YSL Y
Sbjct:    1 MTATTFFLFLIPVLGIVLLLVNLIFSPSNEYLEKDSAFECGFHSFLGQNRTQFGISFFVFALLFLLFDLEILLLYPYVVSAYTNGIYGLVIALVFSLVLTLGFAFELGKNALKIESRQNNDFNNESWESYSLTY 134
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BLAST of mRNA_H-canaliculatus_F_contig11009.934.1 vs. uniprot
Match: UPI00102835A3 (NADH dehydrogenase subunit 3 n=2 Tax=Coccidioides TaxID=5500 RepID=UPI00102835A3)

HSP 1 Score: 201 bits (512), Expect = 1.500e-64
Identity = 103/135 (76.30%), Postives = 123/135 (91.11%), Query Frame = 1 
Query:    1 MTTTTFFLFLIPVLGIILLLVNLILSPHNPYQEKDSAFECGFHSFLGQNRTQFSISFFIFALLFLLFDLEILLIYPYVVSAYTNGIYGLLVMIVFFLVLTLGFAFELGKNALKIESRQIFNFNIKS*NGYSLIYK 405
            MT+TTF    IP L I+LL++NL+ S HNPYQEKDSAFECGFHSFLGQNRTQFSISFFIFALLFLLFDLEILL+YPY+VSAY NG+YGL++M++FFL+LTLGFAFELGKNALKIES+Q+++F+ K  +G+SLIYK
Sbjct:    1 MTSTTFXXXXIPTLAILLLVINLLFSLHNPYQEKDSAFECGFHSFLGQNRTQFSISFFIFALLFLLFDLEILLVYPYIVSAYFNGLYGLIIMLIFFLILTLGFAFELGKNALKIESKQMYSFDTKIWDGFSLIYK 135
[Close]
BLAST of mRNA_H-canaliculatus_F_contig11009.934.1 vs. uniprot
Match: A0A286MUM2_9EURO (NADH-ubiquinone oxidoreductase chain 3 n=1 Tax=Mycocalicium subtile TaxID=124099 RepID=A0A286MUM2_9EURO)

HSP 1 Score: 196 bits (498), Expect = 1.970e-62
Identity = 101/121 (83.47%), Postives = 114/121 (94.21%), Query Frame = 1 
Query:    1 MTTTTFFLFLIPVLGIILLLVNLILSPHNPYQEKDSAFECGFHSFLGQNRTQFSISFFIFALLFLLFDLEILLIYPYVVSAYTNGIYGLLVMIVFFLVLTLGFAFELGKNALKIESRQIFN 363
            M TTTF    IP+L +ILL VNLIL+PHNPYQEKDSAFECGFHSFLGQNRTQFSISFFIFALLFLLFDLEILL+YPY+VSAYTNG+YGL++M++FFLVLTLGFAFELGKNALKI+SRQ+F+
Sbjct:    1 MNTTTFXXXXIPILALILLAVNLILAPHNPYQEKDSAFECGFHSFLGQNRTQFSISFFIFALLFLLFDLEILLVYPYIVSAYTNGVYGLIIMLIFFLVLTLGFAFELGKNALKIDSRQMFS 121
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BLAST of mRNA_H-canaliculatus_F_contig11009.934.1 vs. uniprot
Match: A0A5Q0U1I9_MONFR (NADH-ubiquinone oxidoreductase chain 3 n=3 Tax=Sclerotiniaceae TaxID=28983 RepID=A0A5Q0U1I9_MONFR)

HSP 1 Score: 194 bits (494), Expect = 1.480e-61
Identity = 103/132 (78.03%), Postives = 117/132 (88.64%), Query Frame = 1 
Query:    1 MTTTTFFLFLIPVLGIILLLVNLILSPHNPYQEKDSAFECGFHSFLGQNRTQFSISFFIFALLFLLFDLEILLIYPYVVSAYTNGIYGLLVMIVFFLVLTLGFAFELGKNALKIESRQIFNF-NIKS*NGYS 393
            MT+TTFF   IP+L +ILL VNLI +PHNPYQEKDS FECGFHSFLGQNRTQFSISFFIFALLFLLFDLEILL+YPYVVSAYTNGIYGL++M++FFL LTLGFAFELGKNALKI+S+Q   F N+++   YS
Sbjct:    1 MTSTTFFFVFIPILAVILLAVNLIFAPHNPYQEKDSVFECGFHSFLGQNRTQFSISFFIFALLFLLFDLEILLVYPYVVSAYTNGIYGLVIMLIFFLALTLGFAFELGKNALKIDSKQNLQFLNVETDRVYS 132
[Close]
BLAST of mRNA_H-canaliculatus_F_contig11009.934.1 vs. uniprot
Match: UPI001FA714F7 (NADH dehydrogenase subunit 3 n=1 Tax=Ciborinia camelliae TaxID=647257 RepID=UPI001FA714F7)

HSP 1 Score: 194 bits (494), Expect = 1.480e-61
Identity = 101/122 (82.79%), Postives = 111/122 (90.98%), Query Frame = 1 
Query:    1 MTTTTFFLFLIPVLGIILLLVNLILSPHNPYQEKDSAFECGFHSFLGQNRTQFSISFFIFALLFLLFDLEILLIYPYVVSAYTNGIYGLLVMIVFFLVLTLGFAFELGKNALKIESRQIFNF 366
            MT+TTFF   IP+L +ILL VNLI +PHNPYQEKDS FECGFHSFLGQNRTQFSISFFIFALLFLLFDLEILL+YPYVVSAYTNG+YGL+VM++FFL LTLGFAFELGKNALKI+SRQ   F
Sbjct:    1 MTSTTFFFIFIPILAVILLAVNLIFAPHNPYQEKDSVFECGFHSFLGQNRTQFSISFFIFALLFLLFDLEILLVYPYVVSAYTNGVYGLVVMLIFFLALTLGFAFELGKNALKIDSRQNLQF 122
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig11009.934.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
NU3M_EMEND6.710e-7590.30NADH-ubiquinone oxidoreductase chain 3 n=34 Tax=ce... [more]
A0A4P2W1Z1_MONPU9.130e-7385.07NADH-ubiquinone oxidoreductase chain 3 n=2 Tax=cel... [more]
G8I2R5_9EURO4.850e-7197.46NADH-ubiquinone oxidoreductase chain 3 n=5 Tax=leo... [more]
M4GGS3_TALMQ1.200e-7086.57NADH-ubiquinone oxidoreductase chain 3 n=3 Tax=Tal... [more]
C5HA24_TRIRU6.450e-6880.60NADH-ubiquinone oxidoreductase chain 3 n=6 Tax=Art... [more]
A0A6H1XFD3_PENCI7.430e-6582.84NADH-ubiquinone oxidoreductase chain 3 n=1 Tax=Pen... [more]
UPI00102835A31.500e-6476.30NADH dehydrogenase subunit 3 n=2 Tax=Coccidioides ... [more]
A0A286MUM2_9EURO1.970e-6283.47NADH-ubiquinone oxidoreductase chain 3 n=1 Tax=Myc... [more]
A0A5Q0U1I9_MONFR1.480e-6178.03NADH-ubiquinone oxidoreductase chain 3 n=3 Tax=Scl... [more]
UPI001FA714F71.480e-6182.79NADH dehydrogenase subunit 3 n=1 Tax=Ciborinia cam... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig11009contigH-canaliculatus_F_contig11009:3187..3591 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Taxonomic scopeFungi
Seed ortholog score229.6
Seed ortholog evalue8.4e-58
Seed eggNOG ortholog36651.K9F7I6
Preferred namenad3
KEGG rclassRC00061
KEGG koko:K03880
KEGG TC3.D.1.6
KEGG ReactionR11945
KEGG Pathwayko00190,ko01100,ko04714,ko04723,ko05012,map00190,map01100,map04714,map04723,map05012
KEGG ModuleM00142
EggNOG free text desc.Core subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I) that is believed to belong to the minimal assembly required for catalysis. Complex I functions in the transfer of electrons from NADH to the respiratory chain. The immediate electron acceptor for the enzyme is believed to be ubiquinone
EggNOG OGs20N9M@147545,3A8AU@33154,3P783@4751,3QX47@4890,3SCXU@5042,COG0838@1,KOG4662@2759
EC1.6.5.3
COG Functional cat.C
Best tax levelEurotiales
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko03029
Hectar predicted targeting categorysignal peptide
Exons1
Model size405
Cds size381
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928777.2963514-UTR-H-canaliculatus_F_contig11009:3186..32101622928777.2963514-UTR-H-canaliculatus_F_contig11009:3186..3210Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig11009 3187..3210 -
1696845559.997715-UTR-H-canaliculatus_F_contig11009:3186..32101696845559.997715-UTR-H-canaliculatus_F_contig11009:3186..3210Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig11009 3187..3210 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928777.3128726-CDS-H-canaliculatus_F_contig11009:3210..35911622928777.3128726-CDS-H-canaliculatus_F_contig11009:3210..3591Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig11009 3211..3591 -
1696845560.0106323-CDS-H-canaliculatus_F_contig11009:3210..35911696845560.0106323-CDS-H-canaliculatus_F_contig11009:3210..3591Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig11009 3211..3591 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig11009.934.1prot_H-canaliculatus_F_contig11009.934.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig11009 3211..3591 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig11009.934.1

>prot_H-canaliculatus_F_contig11009.934.1 ID=prot_H-canaliculatus_F_contig11009.934.1|Name=mRNA_H-canaliculatus_F_contig11009.934.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=127bp
MTTTTFFLFLIPVLGIILLLVNLILSPHNPYQEKDSAFECGFHSFLGQNR
TQFSISFFIFALLFLLFDLEILLIYPYVVSAYTNGIYGLLVMIVFFLVLT
LGFAFELGKNALKIESRQIFNFNIKS*
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mRNA from alignment at H-canaliculatus_F_contig11009:3187..3591-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig11009.934.1 ID=mRNA_H-canaliculatus_F_contig11009.934.1|Name=mRNA_H-canaliculatus_F_contig11009.934.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=405bp|location=Sequence derived from alignment at H-canaliculatus_F_contig11009:3187..3591- (Hapterophycus canaliculatus Oshoro5f female)
ATGACAACAACAACTTTTTTTTTATTTTTAATTCCAGTATTAGGTATAAT
ATTATTATTAGTTAATTTAATACTTTCACCACATAACCCTTATCAAGAAA
AGGATAGTGCTTTTGAGTGTGGTTTTCATTCTTTTTTAGGACAAAATAGA
ACACAATTTAGTATTTCTTTCTTTATATTTGCTTTATTATTTTTATTATT
TGATTTAGAAATTTTATTAATATATCCTTATGTTGTTAGTGCTTACACTA
ATGGTATTTATGGTTTATTAGTAATGATAGTATTCTTCCTAGTATTAACT
TTAGGTTTTGCCTTTGAATTAGGTAAAAATGCTTTAAAAATAGAAAGTAG
ACAAATATTTAATTTTAATATAAAATCTTGAAATGGTTATTCTTTAATTT
ATAAG
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig11009:3187..3591-

>mRNA_H-canaliculatus_F_contig11009.934.1 ID=mRNA_H-canaliculatus_F_contig11009.934.1|Name=mRNA_H-canaliculatus_F_contig11009.934.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=762bp|location=Sequence derived from alignment at H-canaliculatus_F_contig11009:3187..3591- (Hapterophycus canaliculatus Oshoro5f female)
ATGACAACAACAACTTTTTTTTTATTTTTAATTCCAGTATTAGGTATAAT
ATTATTATTAGTTAATTTAATACTTTCACCACATAACCCTTATCAAGAAA
AGGATAGTGCTTTTGAGTGTGGTTTTCATTCTTTTTTAGGACAAAATAGA
ACACAATTTAGTATTTCTTTCTTTATATTTGCTTTATTATTTTTATTATT
TGATTTAGAAATTTTATTAATATATCCTTATGTTGTTAGTGCTTACACTA
ATGGTATTTATGGTTTATTAGTAATGATAGTATTCTTCCTAGTATTAACT
TTAGGTTTTGCCTTTGAATTAGGTAAAAATGCTTTAAAAATAGAAAGTAG
ACAAATATTTAATTTTAATATAAAATCTTGAATGACAACAACAACTTTTT
TTTTATTTTTAATTCCAGTATTAGGTATAATATTATTATTAGTTAATTTA
ATACTTTCACCACATAACCCTTATCAAGAAAAGGATAGTGCTTTTGAGTG
TGGTTTTCATTCTTTTTTAGGACAAAATAGAACACAATTTAGTATTTCTT
TCTTTATATTTGCTTTATTATTTTTATTATTTGATTTAGAAATTTTATTA
ATATATCCTTATGTTGTTAGTGCTTACACTAATGGTATTTATGGTTTATT
AGTAATGATAGTATTCTTCCTAGTATTAACTTTAGGTTTTGCCTTTGAAT
TAGGTAAAAATGCTTTAAAAATAGAAAGTAGACAAATATTTAATTTTAAT
ATAAAATCTTGA
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