mRNA_H-canaliculatus_F_contig11000.930.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female
Overview
Homology
BLAST of mRNA_H-canaliculatus_F_contig11000.930.1 vs. uniprot
Match: A0A6H5JL50_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JL50_9PHAE) HSP 1 Score: 202 bits (513), Expect = 1.090e-51 Identity = 264/712 (37.08%), Postives = 303/712 (42.56%), Query Frame = 1 Query: 1 QAASGEWPEALESGIGVTGADYTSQGGNGGATPSHQE--DGAAIPS-EADRAAGVDPGRQYEQDEPSAYSMNPLVTSASFNPTAA---DAR-----FHDSAAGAGS-----DASWAPKPSSLASGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDAPLPSGPSGRSLGSAAAALGDE-GEDASSGFGV-------------GALSYHT-EGSIGARSTSTLAALEAKAEAEAYEAELAASASDPALAPGGVGGXXXXXXXXXXXXAF-----SLPPSGRSSGRESHSGSSDPNXXXXXXXXXXXXXXXXXXSASSGAEEL--RDITDEERQARMEDADAARAASLLRGSSFKVPLQPDLERAITEEEQERRRQAVQAVEESRAPITSDSAP---DLGT-----APGATAATAXXXXXXXXXXXXXXXXXXXXXXXXXXXXSAASVVGKLVAGMGIG--RFFGMEGGSAAEPAPAPSPAGALDAGAEPSAEXXXXXXXXXXXXXXXXXXXXXXXXXXAGGSPR--------VGAEYVPVTGEGV---------------------------------------------------------------------------------DAGAPSQEEARPEQPPLHPEDGGPRAAAA--ASPAAAVLSPEEVRAYSENVDRTLEGLPMEEGGVSMPMSELLARAELEVKAEEDPP 1719 Q ASGEWPEA+ESG+G TG YTS G ++ + Q+ + A+ S EADRAAGVDP R+ SA S+ PLVTS SFNP A+ D R DSAA S +ASW ++ G APL SGPSGR+LGSAAAALG+E +D G A+SY T +GS +STSTLA L+AK E XXXXXXXXXXXX LPPSGRSS S S S SS A+EL RD+T+EE Q R+EDA+AARAAS+LRGSSFK PLQPDLERAI EEQERRRQAVQAVE S AP + A DLG+ A TAA A +A +GK+VAGMG+G R FG PA PS A A A AE G P GA+ GEG AGA S+EE RPEQ P + G A PAAA L PEE RAYSENVDRTLEGLP+++GGVSMPMSELLARAELE E P Sbjct: 481 QVASGEWPEAIESGVGTTGVTYTSTSRGGASSVASQQGDEATAVQSAEADRAAGVDPSRREHDTTTSALSIKPLVTSGSFNPAASGSGDGRVPGGYMGDSAASLESSQKSREASWGVSRKTVTPGDSGLLEATEEADEGDSP--------------APLISGPSGRTLGSAAAALGEEDSQDEDERIGSXXXXXXXXXXXXQSAVSYRTADGSASVQSTSTLAPLDAKTEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAVPGLPPSGRSSSNSSSRIQS-------VDHPASRAVRSRAASNSSSADELSQRDLTEEEHQMRVEDAEAARAASVLRGSSFKTPLQPDLERAIAVEEQERRRQAVQAVEASLAPDSGTGAAEPVDLGSPADLPAEAVTAAIAASATGDTEKEGGASVSSSP---------AATGFMGKVVAGMGMGMSRIFGPR-----SPANTPSAASAAATAAADGAEPTVEVEATAAGDSKAVPSQDVAAAGAVAGVPPPEQAQAGDAGADADAAEGEGPAATGVLPPMDEGESEXXXXXXXXXXXXXAPPAAIAAAAAGAXXXXXXXXXXXXXXXXXXXXXXXAGVADSGXXXXXXXXDQKAGASSREEGRPEQVLPSPSEAGAAXXXXXXAVPAAA-LGPEEARAYSENVDRTLEGLPIDDGGVSMPMSELLARAELEASIEHPTP 1156
BLAST of mRNA_H-canaliculatus_F_contig11000.930.1 vs. uniprot
Match: D7FU95_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FU95_ECTSI) HSP 1 Score: 198 bits (503), Expect = 2.000e-50 Identity = 245/672 (36.46%), Postives = 288/672 (42.86%), Query Frame = 1 Query: 7 ASGEWPEALESGIGVTGADYTSQGGNGGATPSHQE--DGAAIPS-EADRAAGVDPGRQYEQDEPSAYSMNPLVTSASFNPTAA---DAR-----FHDSAAGA-----GSDASWAPKPSSLASGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDAPLPSGPSGRSLGSAAAALGDEGEDASSGFGVGALSYHTEGSIGARST-------------------------------------STLAALEAKAEAEAYEAELAASASDPALAPGGVGGXXXXXXXXXXXXAF-SLPPSGRSSGRESHSGSSDPNXXXXXXXXXXXXXXXXXXSASSGAEEL--RDITDEERQARMEDADAARAASLLRGSSFKVPLQPDLERAITEEEQERRRQAVQAVEESRAPITSDSAP---DLGTA---PGATAATAXXXXXXXXXXXXXXXXXXXXXXXXXXXXSAASVVGKLVAGMGIGRFFGMEGGSAAEPAPAPSPAGALDA-------GAEPSAEXXXXXXXXXXXXXXXXXXXXXXXXXXAGGSPRVGAEYVPVT-----------------------------GEGVDAGAPSQEEARPEQP-PLHPEDGGPRAAAAASPAAAVLSPEEVRAYSENVDRTLEGLPMEEGGVSMPMSELLARAELEVKAEEDPPAS 1725 ASGEWPEA+ESG+G+TG YTS G +T + Q+ + A+ S EADRAAGVDP R+ SA SMNPLVTS SFNP A+ D R DSAA S+ASW ++ G APL SGPSGR+LGSAAAALG GED S +G IG+ S + G XXXXXX A LPPSGRSS S S S SS A+EL RD+T+EERQ R+ED++AARAAS+LRGSSFK PL PDLE AI E+Q+RRRQAVQ +E SRAP + A DLG+ P A A +A +GK+VAGMG+ RFF A +PA +P+ A GAEP+AE AG S V A+YV AGA S+EE RPEQ P E G AA L PEE RAYSENVDRTLEGLP+++GGVSMPMSELLARAELE AE PA+ Sbjct: 354 ASGEWPEAMESGVGMTGVTYTSNSRGGASTVASQQGDEATAVQSAEADRAAGVDPSRREHDTSTSAISMNPLVTSDSFNPAASGSGDGRVPGGYIGDSAASLESSRKSSEASWGASRKTVTPGDSGLLETTEEAEEGESP--------------APLISGPSGRTLGSAAAALG--GED----------SQDEDGRIGSGSAVGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXIDGPAAVVXXXXXXTAVPGLPPSGRSSSNSSSRIQS-------VDYPASRVARSRAASNSSSADELSQRDLTEEERQMRVEDSEAARAASVLRGSSFKTPLHPDLEHAIAVEQQDRRRQAVQGLEASRAPDSGTGAAEPVDLGSPADLPAEVVAAAITAAAAGDAEKEGEAAASPSP-------AATGFMGKVVAGMGMSRFF-------APRSPANTPSAAXXXXXXXXXDGAEPTAEVEATA---------------------AGDSEAVPAQYVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEXANAHKAGASSREEGRPEQKLPSPSEAGXXXXXXXXXXPAAPLGPEEARAYSENVDRTLEGLPIDDGGVSMPMSELLARAELEASAEHPAPAA 957 The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig11000.930.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90) Total hits: 2
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-canaliculatus_F_contig11000.930.1 >prot_H-canaliculatus_F_contig11000.930.1 ID=prot_H-canaliculatus_F_contig11000.930.1|Name=mRNA_H-canaliculatus_F_contig11000.930.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=575bp QAASGEWPEALESGIGVTGADYTSQGGNGGATPSHQEDGAAIPSEADRAAback to top mRNA from alignment at H-canaliculatus_F_contig11000:283..4269- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-canaliculatus_F_contig11000.930.1 ID=mRNA_H-canaliculatus_F_contig11000.930.1|Name=mRNA_H-canaliculatus_F_contig11000.930.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=3987bp|location=Sequence derived from alignment at H-canaliculatus_F_contig11000:283..4269- (Hapterophycus canaliculatus Oshoro5f female)back to top Coding sequence (CDS) from alignment at H-canaliculatus_F_contig11000:283..4269- >mRNA_H-canaliculatus_F_contig11000.930.1 ID=mRNA_H-canaliculatus_F_contig11000.930.1|Name=mRNA_H-canaliculatus_F_contig11000.930.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=3450bp|location=Sequence derived from alignment at H-canaliculatus_F_contig11000:283..4269- (Hapterophycus canaliculatus Oshoro5f female)back to top |