mRNA_H-canaliculatus_F_contig110.924.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female
Overview
Homology
BLAST of mRNA_H-canaliculatus_F_contig110.924.1 vs. uniprot
Match: D8LPW4_ECTSI (Phosphatidate cytidylyltransferase n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LPW4_ECTSI) HSP 1 Score: 343 bits (879), Expect = 2.270e-107 Identity = 225/391 (57.54%), Postives = 259/391 (66.24%), Query Frame = 2 Query: 68 MGLRERFLTAGVAIPLALWAIFYDAKLCLSLILVLQAICVHELGQLLRRTRAARAIAATGVRVGIIGSPFLLHVIAETVALVTAFGNRDASAAAIVVGMALIVARRIAIMRDHWSASNLAAGKAASAPDFSSDRSSSCRQGELGSGPAAAMKTVTTAVHGPLPACFDAAKIGEDGGXXXXXXXXX-SGVVEAGVFLLALEISAMLWLVGGWSSLVALRFRGSRGAADVVFVFSVVFNSDNGGLLAGSVFKAFGRKWQ-SIGEPGLQDVRSPEGPKSTPAAAA----IGTGVSAPSLLNVASPNKTWVGVTGAIVLGTTTALVLEGVLGGLYPGPFW-QTHRGLPGEQ-KAVFFSLGDLPRAWLGLAGAAVCAVGVLGDLWESLLKRTAMVK 1216 MGLRERFLTA VA+PLALWAIF+DA LCLSL+LVLQA+CV E+G+LLRRTRAARAIAATGV V ++GS FL HVIAETV+L+TAF RDA+ A+ VGMALIVARR+ +MRDHW AS L+A K +G GGXXXXXXXXX +GV+EAGVFLLALEISAMLW+V G SSLVALRFRGSRGAADVVF+ +VVFNSDNGGLLAGS++K RK Q + L TP AAA + G P LL VASP KTWVGVTG+I LGT TAL LE L L P + LPGE+ + FS+G + LG+ GA +C VGV+GDLWESLLKRTAMVK Sbjct: 1 MGLRERFLTAAVALPLALWAIFHDAWLCLSLVLVLQAVCVQEVGELLRRTRAARAIAATGVGVALLGSTFLFHVIAETVSLITAFCGRDAAGIAMCVGMALIVARRLVLMRDHWVASKLSAEK----------------------------------------------PVGVSGGXXXXXXXXXXAGVMEAGVFLLALEISAMLWMVCGCSSLVALRFRGSRGAADVVFLLAVVFNSDNGGLLAGSMYKVLRRKRQLHLSSSELLQRHQRSSASQTPPAAAGAAEMTPGQKHPGLLTVASPGKTWVGVTGSIALGTATALTLEQALLFLLHEPLLSRVGESLPGEEERGGVFSVGGMSSGRLGVVGAGLCIVGVVGDLWESLLKRTAMVK 345
BLAST of mRNA_H-canaliculatus_F_contig110.924.1 vs. uniprot
Match: K0C3C6_CYCSP (Phosphatidate cytidylyltransferase n=7 Tax=Piscirickettsiaceae TaxID=135616 RepID=K0C3C6_CYCSP) HSP 1 Score: 58.2 bits (139), Expect = 1.440e-5 Identity = 29/63 (46.03%), Postives = 41/63 (65.08%), Query Frame = 3 Query: 1428 FGAAAPLFHHVFSLLVRRRLTTNGGSRPSVKDSGTIFPGHGGCLDRLDGVLAAAPLYLAVVRM 1616 F A +F +F L++RR+ +VKDSG I PGHGG LDR+D ++AAAP+Y+A + M Sbjct: 192 FVAFVSVFGDLFESLMKRRV--------NVKDSGAILPGHGGVLDRIDSLIAAAPVYVACLLM 246
BLAST of mRNA_H-canaliculatus_F_contig110.924.1 vs. uniprot
Match: A0A2H6AXR0_9BACT (Phosphatidate cytidylyltransferase n=1 Tax=bacterium HR40 TaxID=2035435 RepID=A0A2H6AXR0_9BACT) HSP 1 Score: 58.2 bits (139), Expect = 1.900e-5 Identity = 33/70 (47.14%), Postives = 40/70 (57.14%), Query Frame = 3 Query: 1425 GFGAAAPLFHHVFSLLVRRRLTTNGGS--------RPSVKDSGTIFPGHGGCLDRLDGVLAAAPLYLAVV 1610 G G AA LF V ++L+ + G R KDSG I PGHGG LDR+DG+L AAPLY A+V Sbjct: 202 GHGGAAALFSGVLAMLLA--VVAQCGDLAESWIKRRSGYKDSGRILPGHGGVLDRIDGLLFAAPLYAAIV 269
BLAST of mRNA_H-canaliculatus_F_contig110.924.1 vs. uniprot
Match: A0A1G0K0V6_9GAMM (Phosphatidate cytidylyltransferase n=1 Tax=Gammaproteobacteria bacterium RIFCSPLOWO2_02_FULL_61_13 TaxID=1798300 RepID=A0A1G0K0V6_9GAMM) HSP 1 Score: 57.0 bits (136), Expect = 4.390e-5 Identity = 29/67 (43.28%), Postives = 38/67 (56.72%), Query Frame = 3 Query: 1425 GFGAAAPLFHHVFSLLVRRRLTTNGGSRPSVKDSGTIFPGHGGCLDRLDGVLAAAPLYLAVVRMFGE 1625 G AA + +F +V+R +VKDSGT+ PGHGG LDR+D V AAAP+YL + G Sbjct: 214 GMTVAASIVGDLFESMVKRSA--------NVKDSGTLLPGHGGILDRIDSVTAAAPIYLVGLHFAGS 272
BLAST of mRNA_H-canaliculatus_F_contig110.924.1 vs. uniprot
Match: A0A4Q6G1B5_9GAMM (Phosphatidate cytidylyltransferase (Fragment) n=1 Tax=Xanthomonadaceae bacterium TaxID=1926873 RepID=A0A4Q6G1B5_9GAMM) HSP 1 Score: 53.9 bits (128), Expect = 5.930e-5 Identity = 26/55 (47.27%), Postives = 35/55 (63.64%), Query Frame = 3 Query: 1458 VFSLLVRRRLTTNGGSRPSVKDSGTIFPGHGGCLDRLDGVLAAAPLYLAVVRMFG 1622 +F L++R + VKDSG + PGHGG LDRLDGVLAA P+++ +FG Sbjct: 88 LFESLMKRHV--------GVKDSGNLIPGHGGILDRLDGVLAALPIFVLGKELFG 134
BLAST of mRNA_H-canaliculatus_F_contig110.924.1 vs. uniprot
Match: A0A1X1QJ59_9GAMM (Phosphatidate cytidylyltransferase n=1 Tax=Cycloclasticus sp. symbiont of Poecilosclerida sp. N TaxID=1840472 RepID=A0A1X1QJ59_9GAMM) HSP 1 Score: 56.2 bits (134), Expect = 6.820e-5 Identity = 30/83 (36.14%), Postives = 47/83 (56.63%), Query Frame = 3 Query: 1374 GRCYIFGRSGFL*FGHDGFGAAAPLFHHVFSLLVRRRLTTNGGSRPSVKDSGTIFPGHGGCLDRLDGVLAAAPLYLAVVRMFG 1622 G ++ FL F A ++ +F L++RR+ + KDSG+I PGHGG LDR+D ++AAAP++LA + + G Sbjct: 182 GGPFLIAEDRFLFIVLSLFVAFVSVYGDLFESLMKRRV--------NFKDSGSILPGHGGVLDRIDSLIAAAPVFLACLMLSG 256
BLAST of mRNA_H-canaliculatus_F_contig110.924.1 vs. uniprot
Match: A0A848UW46_9FLAO (Phosphatidate cytidylyltransferase n=1 Tax=Flavobacteriales bacterium TaxID=2021391 RepID=A0A848UW46_9FLAO) HSP 1 Score: 52.0 bits (123), Expect = 8.350e-5 Identity = 25/50 (50.00%), Postives = 32/50 (64.00%), Query Frame = 3 Query: 1470 LVRRRLTTNGGSRPSVKDSGTIFPGHGGCLDRLDGVLAAAPLYLAVVRMF 1619 LV +L N +KDSG + PGHGG LDR DGVL AAP+Y ++ +F Sbjct: 34 LVESKLKRN----LEIKDSGNMLPGHGGILDRFDGVLLAAPVYFLLIILF 79
BLAST of mRNA_H-canaliculatus_F_contig110.924.1 vs. uniprot
Match: A0A1Q7FWE6_9BACT (Phosphatidate cytidylyltransferase n=1 Tax=Armatimonadetes bacterium 13_1_40CM_64_14 TaxID=1805026 RepID=A0A1Q7FWE6_9BACT) HSP 1 Score: 55.8 bits (133), Expect = 9.240e-5 Identity = 22/40 (55.00%), Postives = 31/40 (77.50%), Query Frame = 3 Query: 1506 RPSVKDSGTIFPGHGGCLDRLDGVLAAAPLYLAVVRMFGE 1625 R VKD+GTI PGHGG +DR DG+LAA+P+ ++R++G Sbjct: 221 RAGVKDTGTILPGHGGVIDRFDGLLAASPIVYLLIRLYGR 260 The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig110.924.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90) Total hits: 8
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-canaliculatus_F_contig110.924.1 >prot_H-canaliculatus_F_contig110.924.1 ID=prot_H-canaliculatus_F_contig110.924.1|Name=mRNA_H-canaliculatus_F_contig110.924.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=452bp MGLRERFLTAGVAIPLALWAIFYDAKLCLSLILVLQAICVHELGQLLRRTback to top mRNA from alignment at H-canaliculatus_F_contig110:22546..26926+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-canaliculatus_F_contig110.924.1 ID=mRNA_H-canaliculatus_F_contig110.924.1|Name=mRNA_H-canaliculatus_F_contig110.924.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=4381bp|location=Sequence derived from alignment at H-canaliculatus_F_contig110:22546..26926+ (Hapterophycus canaliculatus Oshoro5f female)back to top Coding sequence (CDS) from alignment at H-canaliculatus_F_contig110:22546..26926+ >mRNA_H-canaliculatus_F_contig110.924.1 ID=mRNA_H-canaliculatus_F_contig110.924.1|Name=mRNA_H-canaliculatus_F_contig110.924.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=2712bp|location=Sequence derived from alignment at H-canaliculatus_F_contig110:22546..26926+ (Hapterophycus canaliculatus Oshoro5f female)back to top |