mRNA_H-canaliculatus_F_contig1006.92.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig1006.92.1
Unique NamemRNA_H-canaliculatus_F_contig1006.92.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig1006.92.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig1006contigH-canaliculatus_F_contig1006:10412..14204 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size273
Cds size270
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig1006.92.1prot_H-canaliculatus_F_contig1006.92.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig1006 10414..14204 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928634.0288315-CDS-H-canaliculatus_F_contig1006:10413..104391622928634.0288315-CDS-H-canaliculatus_F_contig1006:10413..10439Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1006 10414..10439 -
1696845505.1464643-CDS-H-canaliculatus_F_contig1006:10413..104391696845505.1464643-CDS-H-canaliculatus_F_contig1006:10413..10439Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1006 10414..10439 -
1622928634.0412395-CDS-H-canaliculatus_F_contig1006:10994..110961622928634.0412395-CDS-H-canaliculatus_F_contig1006:10994..11096Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1006 10995..11096 -
1696845505.1595764-CDS-H-canaliculatus_F_contig1006:10994..110961696845505.1595764-CDS-H-canaliculatus_F_contig1006:10994..11096Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1006 10995..11096 -
1622928634.0564125-CDS-H-canaliculatus_F_contig1006:14062..142041622928634.0564125-CDS-H-canaliculatus_F_contig1006:14062..14204Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1006 14063..14204 -
1696845505.171754-CDS-H-canaliculatus_F_contig1006:14062..142041696845505.171754-CDS-H-canaliculatus_F_contig1006:14062..14204Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1006 14063..14204 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig1006.92.1

>prot_H-canaliculatus_F_contig1006.92.1 ID=prot_H-canaliculatus_F_contig1006.92.1|Name=mRNA_H-canaliculatus_F_contig1006.92.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=90bp
GPEQNPKQTCTKIEKKDTRRTKNRGCGEGERQQLQGGRTKVVGAHPRGGM
SATRRARTDVGGFGASGASEWAAVPGAIVETGLSGSRCVD
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mRNA from alignment at H-canaliculatus_F_contig1006:10412..14204-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig1006.92.1 ID=mRNA_H-canaliculatus_F_contig1006.92.1|Name=mRNA_H-canaliculatus_F_contig1006.92.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=3793bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1006:10412..14204- (Hapterophycus canaliculatus Oshoro5f female)
GGGCCCGAACAAAACCCAAAGCAAACTTGCACCAAAATAGAGAAGAAGGA
CACCAGAAGGACGAAGAATAGAGGCTGTGGAGAAGGCGAGCGTCAGCAAC
TCCAGGGAGGAAGAACGAAGGTGGTCGGCGCACACCCAAGAGGTGAGAGC
AGGGTCCGGTTGTGAATCAATCCTCAATCGTCTCGGCCCCTCTCGCAAAA
ATGTTCCCGCAAACCTGTAACATGAGAGCGTACCCCGGGGAGAGCAACTT
CTCGTACCCTACCCGTCACCCACAGCGGTGGAAACTTGGATGCTTTTCGC
ATGCTGCGCAAAACGTCACGTTCCCTGCCTCAAATCCCTGGCAACTTGGG
TGCGACCTCCCAAATACGCCCACAAAATCTCCAGGCGACTTTCCCAAGTT
GTGTAAGACTTCCCGTTCTGCCGTAGTTTTAGAAAGACTTTCCGAACTGG
CTCTCCGAACTGAATCCAAACTGAACCAAAATATTTGGTTACAATGTACT
TGAGGTGGCTTTCCGTGTCCTCTCCAACTAGCAACGCGTTGGGAAGTTTG
CGTTTGGTGCGACACCCATTCCGCACACAAAAATCCGGTGCCTTTGGTAC
TGCTTTCACACCCTCCCCTGAGTAGAGCATGGAGATAGCTGCCGGAGCGT
ATGGGTCTGCCGCGAGGAACACGGGCAGGCAGTTGCAACGACCCGGGGGC
GGTTGTGCTGTACTTTTCGAACACCGGGGGTGGTTGTTGGTTGTCAACGA
CCCGAGGACAATAGAAGTGCAGCAACAACACGACGGCAGGGTAGGGTACG
CAGGAAAGGCAGGGTAGCTAATCACCCGCAGTCTCTCGGTAGGTTTGCTG
GTCGCATGTGTGTGTGCCCATGTTTGCATGTGCTTGGGCGCACAAGTACG
CTGTACGCACACGTACGTCATCCTCCCTCCCTAGGGACACAACGAAGCAG
TACGTACATACTTGCACTTGCACTTGAAGAGATTCTTCCGATGGCCCTTG
CTGGTGCAACTTGTTGCGTCACGGTCTACGATCGATCTCAACTCACAACA
GCAGTCCCTTATATTGTGCCTTCGGTGCCAAGGTAACTCTGGGAGTAATC
GAACAGCCGCACGTGTTTCGTGGCACCAGTTGGTCTTTTATCGTACACGA
ATAAGAGATCCATACTGCATCCCTTCAATTTATCTTCAGCCTGCTAGACA
GCGTCCGAGCCATCTCCCCGACTTCTTTTTTTTATCTTGCCTTGGGATGT
TGGCGATTGTGTTCGGTGGCCCATGTTTCTAGTCATCTTCATGTTTTCTA
TTCTGTGTCACGTGTGACTGTTGTGTTGTGTGCGAGTTGTCTGGGTCCGT
TTTCCTTCTCTTGTTCGCCCGACGTGGGACATGCCTTTGTTTCTTTTTTT
TCGGTGGGTTGCTTGTGACAACCGAACAACGTCTCCTGAGCTAGACTTTT
CAAGACGAAAACGACAGCAACAACAAACCATGAACAAACATACTCGGTTG
TGTACCCGGCCCAGCGGTCCGGCAAGTTCCGGCAACATCCCGTCCATTGT
TGTACTGAAAACTCGGTATTTTGGGTTCGTACGATTTTCCGGACCCTTAA
CAATGTAGTCCTTCGTAAGTGCGTGTACCTTGTACTTCAATATTTTCACC
CCAACAGAAACCTTCCGTGGTGCCCCGGAAGACGGCAAAACCACAGCAGC
ACTCCTGCGGATGAAACGTCGATGTTTTGCCAGTTGTGGCTGAGATGAGT
ATTACACGTGGACAGATAAGGCAACAGAGAAGACAAGGACCTTGAGACCG
GGAGACTTTTTGTGTTTTATGTTTTTCTTTTATCAGAGGAGAACCCGCCA
TGCCGACAAGCCCCTGAAGCACAGCAACAGTATGTATGGCAGGCTGGGTG
ACGCGCCGTGCGGCGTTTTGTCCACAATTTCTTCAAAGGTGGTCGCAGAC
AGAACGTGGGCCGTTTTGGCATGGAATCGTAGCTGCTGGGCTGACGCCTA
GTCCGTCCTTTGCTCTCTCCGCACCGCACCGACCCTTGGTGCACAATAAA
AAATAGTGTGTGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAG
AGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAG
AGAGAAGGAGAGGGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAG
AGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGGGAGAGAGAGAA
ACAGAGAGAGAGAGAGAAAGACAGAGTGAGAGAGAGAGAGAGAGAGAGAG
AGAGAGAGAGAGGGAGAGAGCGGGCAGGCGAGCGTCAGGGATGCACGACA
CTGCTGTGTGGTGCTGCGCTGTGCTGTGCTGTGAAATTCGTGTGTCGCTG
AACATGGGCGCCCATAACAAGGCTGCGCAGCACCCCGCCTGCCCCCCATC
ATTTCAGCCGCTGACAGCACTTAAGAACAACACTGCTCCTGCGCGCTCAC
ATCTATTTCTTTGGCTGCGTGGAGAAAGCAAAAGCATAATAAACTCGATT
TCTGTGGGTGCGCATTGGACTTTTGCGGATACGAGTATCGACAGTCGTAG
TCCCGATCCATGGAACCTCGCCGGGCGCGATTTGCCTGCATCCTGGGCTC
GCTTATGCTCTGTTGAAGGTAACGTCCGTCGCTCCAACGAGTTCATTCCC
AGTCGCTCTTACCTCTCTGCAAGGCGCGCCTGAATATAGAGCGCCGTCCA
TTACTGAGTCGCGCCTGAGCGCCATCCAGTCGGAGTTGGATGTACTCTTC
AGCAACTTCTCTGGGGAATCAGCGATTGTTGGTGCTGGTGCCAGCAGCAG
CAGCAGCGACGTCGCTCGTTCCACCTCCACTTGCTCCTCGACTGCGCTCT
CGGCCATGAACGTCGACCGAACAGGGCGTCGCGTCCCCCTTGTGGCGCGA
AATAGCAAAATTCGCGCGTGACGGCCCGACAGCCTCTTTCTCTGGCGCGC
GCGCTGGCGTTCTACGAAACGTTCTTCTTATGTCAGCCCTTTTATTCCCA
GCCAACGCTCAACACTGACTCGATACGTCTTCTCCCGTCTTCGTGCTCGC
TTTCGCAGGAGGCATGTCTGCTACGCGGAGAGCGAGGACAGACGTCGGCG
GCTTCGGGGCATCCGGAGCCAGCGAGTGGGCGGCGGTACCGGGCGCGATC
GTCGAAACAGGTGAGCACAGAAAAACCGCACGGCCATGTCATCTTTATGG
CTGGTCCGTTGCGTCGATTGCCCTCGGTGCCTTCGGAACGTTCGCCACCT
ACCCCAGTTGCGCCCAACTCTGGCCTTTCACTGGTCTTCCCTTCAGCTCA
AGTGTGTTTCGTCAGCGAGATAAATCTGGACCTAAGCGTTTTTGTCGTCG
ATCGCGTGGATGGGAGGTAGTTCTGGATGCGTGGCGCTGTGACGCAGGGC
TCGAGATGTTCCCCGTTTGTGCCGTTTTTCTTCAGCATCAGCCAGTTTTG
CTTTTTGGCAGCCATGGATACTCTGCAGCTCCTGCTCCTAGCGCGCGTCA
TGATGGGCAAGAAAAAAGCGGTCAACGTTTTCATGAAACTGACACTGGCG
GTGACGTGGTTAATGCTGTGTACTCGGGAGGCCGGGGTGAGATACAGATA
AGGGGTTTCCGCTCTGCATTACGCTGCGTAATGTCTTTGTTTAGAAGCTC
GAATGGCAACTGATTCTTAGCTGCTTCTCTCGTCCTCCCCGTTCTCGTGC
ACTCGTTCCCTTCAGGCCTATCTGGCAGCCGATGCGTTGACGC
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig1006:10412..14204-

>mRNA_H-canaliculatus_F_contig1006.92.1 ID=mRNA_H-canaliculatus_F_contig1006.92.1|Name=mRNA_H-canaliculatus_F_contig1006.92.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=540bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1006:10412..14204- (Hapterophycus canaliculatus Oshoro5f female)
GGGCCCGAACAAAACCCAAAGCAAACTTGCACCAAAATAGAGAAGAAGGA
CACCAGAAGGACGAAGAATAGAGGCTGTGGAGAAGGCGAGCGTCAGCAAC
TCCAGGGAGGAAGAACGAAGGTGGTCGGCGCACACCCAAGAGGGGCCCGA
ACAAAACCCAAAGCAAACTTGCACCAAAATAGAGAAGAAGGACACCAGAA
GGACGAAGAATAGAGGCTGTGGAGAAGGCGAGCGTCAGCAACTCCAGGGA
GGAAGAACGAAGGTGGTCGGCGCACACCCAAGAGGAGGCATGTCTGCTAC
GCGGAGAGCGAGGACAGACGTCGGCGGCTTCGGGGCATCCGGAGCCAGCG
AGTGGGCGGCGGTACCGGGCGCGATCGTCGAAACAGGAGGCATGTCTGCT
ACGCGGAGAGCGAGGACAGACGTCGGCGGCTTCGGGGCATCCGGAGCCAG
CGAGTGGGCGGCGGTACCGGGCGCGATCGTCGAAACAGGCCTATCTGGCA
GCCGATGCGTTGACGCCTATCTGGCAGCCGATGCGTTGAC
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