mRNA_H-canaliculatus_F_contig11.915.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig11.915.1
Unique NamemRNA_H-canaliculatus_F_contig11.915.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
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BLAST of mRNA_H-canaliculatus_F_contig11.915.1 vs. uniprot
Match: A0A6H5KR93_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KR93_9PHAE)

HSP 1 Score: 91.7 bits (226), Expect = 9.440e-20
Identity = 51/73 (69.86%), Postives = 55/73 (75.34%), Query Frame = 1 
Query:   28 IGGHLGGPSRYQEPA----LAAMAMAGEGVAASGGL-MKAGDVFPDLHHKMSKKIAQLTKVIYHLNTKNEDRQ 231
            +GGHLGGPSR++ P     L + A      A SGG  MKA DVFPDLHHKMSKKIAQLTKVIYHLNTKNEDRQ
Sbjct:    1 MGGHLGGPSRHRGPTPSGVLPSAATTPTEAATSGGTPMKAADVFPDLHHKMSKKIAQLTKVIYHLNTKNEDRQ 73
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BLAST of mRNA_H-canaliculatus_F_contig11.915.1 vs. uniprot
Match: D7FLH8_ECTSI (FAM184 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FLH8_ECTSI)

HSP 1 Score: 77.0 bits (188), Expect = 1.310e-14
Identity = 40/46 (86.96%), Postives = 40/46 (86.96%), Query Frame = 1 
Query:  106 AASGGL-MKAGDVFPDLHHKMSKKIAQLTKVIYHLNTKNEDRQARL 240
            A SGG  MKA DVFPDLHHKMSKKIAQLTKVIYHLNTKNEDRQ  L
Sbjct:   64 ATSGGTPMKAADVFPDLHHKMSKKIAQLTKVIYHLNTKNEDRQFEL 109
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BLAST of mRNA_H-canaliculatus_F_contig11.915.1 vs. uniprot
Match: A0A835ZEA9_9STRA (B30.2/SPRY domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZEA9_9STRA)

HSP 1 Score: 74.3 bits (181), Expect = 1.160e-13
Identity = 35/39 (89.74%), Postives = 36/39 (92.31%), Query Frame = 1 
Query:  124 MKAGDVFPDLHHKMSKKIAQLTKVIYHLNTKNEDRQARL 240
            + AGDVFPDLHHKMSKKIAQLTKVIYHLNTKNEDRQ  L
Sbjct:   10 LTAGDVFPDLHHKMSKKIAQLTKVIYHLNTKNEDRQFEL 48
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BLAST of mRNA_H-canaliculatus_F_contig11.915.1 vs. uniprot
Match: A0A7S3UP41_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3UP41_HETAK)

HSP 1 Score: 71.2 bits (173), Expect = 7.300e-13
Identity = 33/36 (91.67%), Postives = 34/36 (94.44%), Query Frame = 1 
Query:  124 MKAGDVFPDLHHKMSKKIAQLTKVIYHLNTKNEDRQ 231
            MKA +VFPDLHHKMSKKIAQLTKVIYHLNTKNED Q
Sbjct:   11 MKASEVFPDLHHKMSKKIAQLTKVIYHLNTKNEDHQ 46
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BLAST of mRNA_H-canaliculatus_F_contig11.915.1 vs. uniprot
Match: A0A7R9UEV8_9STRA (Hypothetical protein (Fragment) n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9UEV8_9STRA)

HSP 1 Score: 65.5 bits (158), Expect = 1.040e-11
Identity = 29/34 (85.29%), Postives = 32/34 (94.12%), Query Frame = 1 
Query:  139 VFPDLHHKMSKKIAQLTKVIYHLNTKNEDRQARL 240
            VFPD+HHKMSKKIAQLTKVIYHLNTKNED +A +
Sbjct:   10 VFPDVHHKMSKKIAQLTKVIYHLNTKNEDHEAEM 43
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BLAST of mRNA_H-canaliculatus_F_contig11.915.1 vs. uniprot
Match: A0A482SQX4_9ARCH (FAM184 domain-containing protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482SQX4_9ARCH)

HSP 1 Score: 64.7 bits (156), Expect = 1.140e-11
Identity = 30/33 (90.91%), Postives = 31/33 (93.94%), Query Frame = 1 
Query:  127 KAGDVFPDLHHKMSKKIAQLTKVIYHLNTKNED 225
            K  +VFPDLHHKMSKKIAQLTKVIYHLNTKNED
Sbjct:    9 KTMEVFPDLHHKMSKKIAQLTKVIYHLNTKNED 41
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BLAST of mRNA_H-canaliculatus_F_contig11.915.1 vs. uniprot
Match: A0A7S1XST5_9STRA (Hypothetical protein (Fragment) n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1XST5_9STRA)

HSP 1 Score: 65.1 bits (157), Expect = 2.000e-10
Identity = 28/36 (77.78%), Postives = 32/36 (88.89%), Query Frame = 1 
Query:  139 VFPDLHHKMSKKIAQLTKVIYHLNTKNEDRQARLTG 246
            +FPD+HHKMSKKIAQLTKVIYHLNTKNED +A +  
Sbjct:   23 MFPDIHHKMSKKIAQLTKVIYHLNTKNEDHEAEMAA 58
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BLAST of mRNA_H-canaliculatus_F_contig11.915.1 vs. uniprot
Match: UPI001CFF2F7B (uncharacterized protein n=1 Tax=Naegleria lovaniensis TaxID=51637 RepID=UPI001CFF2F7B)

HSP 1 Score: 62.0 bits (149), Expect = 7.420e-10
Identity = 28/40 (70.00%), Postives = 32/40 (80.00%), Query Frame = 1 
Query:  127 KAGDVFPDLHHKMSKKIAQLTKVIYHLNTKNEDRQARLTG 246
            K  + FPD HHKMSKKIAQLTKVIYHLNTKN+D + +L  
Sbjct:   18 KIANGFPDFHHKMSKKIAQLTKVIYHLNTKNDDHEFQLNS 57
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BLAST of mRNA_H-canaliculatus_F_contig11.915.1 vs. uniprot
Match: A0A7S1CCX9_9STRA (Hypothetical protein (Fragment) n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1CCX9_9STRA)

HSP 1 Score: 62.8 bits (151), Expect = 1.330e-9
Identity = 28/33 (84.85%), Postives = 30/33 (90.91%), Query Frame = 1 
Query:  142 FPDLHHKMSKKIAQLTKVIYHLNTKNEDRQARL 240
            FPDLHHKMSKKIAQLTKVIYHLNT+N+D  A L
Sbjct:   10 FPDLHHKMSKKIAQLTKVIYHLNTRNDDHDAEL 42
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BLAST of mRNA_H-canaliculatus_F_contig11.915.1 vs. uniprot
Match: A0A7S1G7I8_9STRA (Hypothetical protein n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1G7I8_9STRA)

HSP 1 Score: 62.8 bits (151), Expect = 1.350e-9
Identity = 28/33 (84.85%), Postives = 30/33 (90.91%), Query Frame = 1 
Query:  142 FPDLHHKMSKKIAQLTKVIYHLNTKNEDRQARL 240
            FPDLHHKMSKKIAQLTKVIYHLNT+N+D  A L
Sbjct:   10 FPDLHHKMSKKIAQLTKVIYHLNTRNDDHDAEL 42
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig11.915.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KR93_9PHAE9.440e-2069.86Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FLH8_ECTSI1.310e-1486.96FAM184 domain-containing protein n=1 Tax=Ectocarpu... [more]
A0A835ZEA9_9STRA1.160e-1389.74B30.2/SPRY domain-containing protein n=1 Tax=Tribo... [more]
A0A7S3UP41_HETAK7.300e-1391.67Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
A0A7R9UEV8_9STRA1.040e-1185.29Hypothetical protein (Fragment) n=1 Tax=Pinguiococ... [more]
A0A482SQX4_9ARCH1.140e-1190.91FAM184 domain-containing protein n=1 Tax=archaeon ... [more]
A0A7S1XST5_9STRA2.000e-1077.78Hypothetical protein (Fragment) n=1 Tax=Phaeomonas... [more]
UPI001CFF2F7B7.420e-1070.00uncharacterized protein n=1 Tax=Naegleria lovanien... [more]
A0A7S1CCX9_9STRA1.330e-984.85Hypothetical protein (Fragment) n=1 Tax=Bicosoecid... [more]
A0A7S1G7I8_9STRA1.350e-984.85Hypothetical protein n=1 Tax=Bicosoecida sp. CB-20... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig11contigH-canaliculatus_F_contig11:9381..9629 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score77.8
Seed ortholog evalue2.7e-12
Seed eggNOG ortholog2880.D7FLH8
Preferred nameFAM184A
EggNOG free text desc.Family with sequence similarity 184, A and B
EggNOG OGs28YSA@1,2R5KC@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons1
Model size249
Cds size249
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928772.0717263-CDS-H-canaliculatus_F_contig11:9380..96291622928772.0717263-CDS-H-canaliculatus_F_contig11:9380..9629Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig11 9381..9629 -
1696845557.8555608-CDS-H-canaliculatus_F_contig11:9380..96291696845557.8555608-CDS-H-canaliculatus_F_contig11:9380..9629Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig11 9381..9629 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig11.915.1prot_H-canaliculatus_F_contig11.915.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig11 9381..9629 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig11.915.1

>prot_H-canaliculatus_F_contig11.915.1 ID=prot_H-canaliculatus_F_contig11.915.1|Name=mRNA_H-canaliculatus_F_contig11.915.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=83bp
MQTGNSFAPIGGHLGGPSRYQEPALAAMAMAGEGVAASGGLMKAGDVFPD
LHHKMSKKIAQLTKVIYHLNTKNEDRQARLTG*
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mRNA from alignment at H-canaliculatus_F_contig11:9381..9629-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig11.915.1 ID=mRNA_H-canaliculatus_F_contig11.915.1|Name=mRNA_H-canaliculatus_F_contig11.915.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=249bp|location=Sequence derived from alignment at H-canaliculatus_F_contig11:9381..9629- (Hapterophycus canaliculatus Oshoro5f female)
ATGCAGACGGGCAACAGCTTCGCACCGATAGGAGGGCACCTCGGTGGCCC
GAGTCGTTACCAAGAACCAGCGTTAGCAGCGATGGCGATGGCAGGGGAAG
GAGTAGCAGCCAGCGGCGGTCTGATGAAGGCTGGCGACGTCTTTCCCGAT
TTGCATCACAAGATGAGCAAGAAAATCGCCCAGCTCACAAAAGTCATCTA
TCATCTCAACACCAAGAATGAAGATCGACAGGCAAGGCTCACTGGGTAG
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig11:9381..9629-

>mRNA_H-canaliculatus_F_contig11.915.1 ID=mRNA_H-canaliculatus_F_contig11.915.1|Name=mRNA_H-canaliculatus_F_contig11.915.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=498bp|location=Sequence derived from alignment at H-canaliculatus_F_contig11:9381..9629- (Hapterophycus canaliculatus Oshoro5f female)
ATGCAGACGGGCAACAGCTTCGCACCGATAGGAGGGCACCTCGGTGGCCC
GAGTCGTTACCAAGAACCAGCGTTAGCAGCGATGGCGATGGCAGGGGAAG
GAGTAGCAGCCAGCGGCGGTCTGATGAAGGCTGGCGACGTCTTTCCCGAT
TTGCATCACAAGATGAGCAAGAAAATCGCCCAGCTCACAAAAGTCATCTA
TCATCTCAACACCAAGAATGAAGATCGACAGGCAAGGCTCACTGGGTAGA
TGCAGACGGGCAACAGCTTCGCACCGATAGGAGGGCACCTCGGTGGCCCG
AGTCGTTACCAAGAACCAGCGTTAGCAGCGATGGCGATGGCAGGGGAAGG
AGTAGCAGCCAGCGGCGGTCTGATGAAGGCTGGCGACGTCTTTCCCGATT
TGCATCACAAGATGAGCAAGAAAATCGCCCAGCTCACAAAAGTCATCTAT
CATCTCAACACCAAGAATGAAGATCGACAGGCAAGGCTCACTGGGTAG
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