mRNA_H-canaliculatus_F_contig1006.91.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig1006.91.1
Unique NamemRNA_H-canaliculatus_F_contig1006.91.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig1006.91.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig1006contigH-canaliculatus_F_contig1006:3305..6326 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size279
Cds size270
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig1006.91.1prot_H-canaliculatus_F_contig1006.91.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig1006 3312..6326 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928633.9698293-UTR-H-canaliculatus_F_contig1006:3304..33111622928633.9698293-UTR-H-canaliculatus_F_contig1006:3304..3311Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1006 3305..3311 +
1696845505.114019-UTR-H-canaliculatus_F_contig1006:3304..33111696845505.114019-UTR-H-canaliculatus_F_contig1006:3304..3311Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1006 3305..3311 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928633.979871-CDS-H-canaliculatus_F_contig1006:3311..33521622928633.979871-CDS-H-canaliculatus_F_contig1006:3311..3352Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1006 3312..3352 +
1696845505.123303-CDS-H-canaliculatus_F_contig1006:3311..33521696845505.123303-CDS-H-canaliculatus_F_contig1006:3311..3352Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1006 3312..3352 +
1622928633.99494-CDS-H-canaliculatus_F_contig1006:6097..63261622928633.99494-CDS-H-canaliculatus_F_contig1006:6097..6326Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1006 6098..6326 +
1696845505.1328776-CDS-H-canaliculatus_F_contig1006:6097..63261696845505.1328776-CDS-H-canaliculatus_F_contig1006:6097..6326Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1006 6098..6326 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig1006.91.1

>prot_H-canaliculatus_F_contig1006.91.1 ID=prot_H-canaliculatus_F_contig1006.91.1|Name=mRNA_H-canaliculatus_F_contig1006.91.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=90bp
MNLQLPDASHLHTRSRAFACRQPRLARKVSKFRRFWRLDVCAVVGDKITA
AADSSDVVSVARNAPDGSKRPQNPRHLATGAVAAALASFL
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mRNA from alignment at H-canaliculatus_F_contig1006:3305..6326+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig1006.91.1 ID=mRNA_H-canaliculatus_F_contig1006.91.1|Name=mRNA_H-canaliculatus_F_contig1006.91.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=3022bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1006:3305..6326+ (Hapterophycus canaliculatus Oshoro5f female)
ATCCACCATGAACCTTCAGCTTCCTGACGCGTCGCACTTACACACCAGGT
GGGCAACAAAAACGTTTTGTTGAGAACCTGTTCAAGGTAGATATGACTTC
TGAGTGTGGAGCCTTCTCCACACCAAGAACACTCTCGTCGATCTCCCTCC
TACAGCACATGCTTGCTGTAACATCTTTCCGCATGAAACACGGAGCCCCT
CTCTGGCCGTCTCAAGGCCGTCGGATTCGGATTGGTATTCGTCCTCTGGG
AACGATCGTAGACTGCAGTTTGGCACTTACAAACGCCCGGTTGTGGTTAT
CGGGGTGATTCAAGACCGCGCTTCCGCATGTAATACACGTTGAACTTGCC
CCGAGAGAGCACGGGATCGTGCATGAACTTGACGGTCAAACCCTCTCTCT
CTGGTGCACGGGTAGACACTTCAGGAAACTAAATGTGGTCTACTGCCGTC
GACCAATCTTCCTCTTTCAAATCTTGACATCTTCCCCAAATCAAGCAGTT
TCCCTCGTGAACTATGCTCAATGAGCTGTCCAATCTAGAGGAAAATAGTA
GCTCTCGTCAAGGGCTCACCAGATCGCGCCCGTCTGTTGGCCAGTTTCCA
CTTTGGTCGGAAGAGTAGTCGGAAGATTGGGAGATCAGAGCTCTCACCGA
TTTTTTGGAGCAAATGCTGGCCCCAAAGCACTGCAGCTGGTTTTCGAATG
CTGGACACTAATTGCAACGCCTTGCTCTGCCCAGACAAAAACAAAAACCA
GCCACCTGTCGAAGCAGAAAGGTGATCTCCTCAAGGTCCGACAAGAGGTT
ATGGTTCAGTAAAGTCCGAAAGGAGAACTACTTCATGGATCGACTTGCTT
GAGAGGATGAGATTTGCGCAGAACGGTTGTGGTGTGTCTAATTGAACGGG
TGTAACTGGAACAGTATCGAAGATCGCGTTCATCTTGCCCACCAAGTCCA
TGCGGCAAAATAATATCCTCCTAAGTCCCATCAAGTCCCGAGTCCCTCCC
GAACCACTGCGCGTCCCAAAAAAACGTGGTGATGCAAAAAAGCTGCATAC
ACAATAGAACAGAGTCCCTACTATAGTCCATGTACACGCTGCCCGTTACT
CTATTCTCTCGACGCCGTCAATCGATCAAAGCTGGCTCGTCCCTCAACGT
AGATCAGCTGATCTCGTGCTTGCCTTGCGACCCCCTCCCCAGCACGAGCA
AAAACACTGGTTGGCCTCGTTGCCGGCTCAGGTGCCGTCATGATCGGCAC
CATCTAACTTAGGCCAGCGAAGCTCGTCGCGCACACACTGAGAAAACATG
GCCTCCGAAGCTTGGCAATAGCGCCAGAGGGATCAAAACGACGCCAAATC
AACGACTGTTTCCTTCATGGGAACCGTGGCGGCCGCCCTCCGTCCGCGTG
TGGAAGGCGACCGGACCTCTCGCTCAATCAAACGGGGTGATTACCACGCT
GCAAACACTGTCCAGAACGCACCAGACCGCTCACACAGTGGCTAGCGCTA
ACCAGGTCAACCGGCGCATGTCGATGGCCTTTCACAGTCAAATTATGGTG
ATCCTGCCTCCCGTTCGGATTTTTTATTTGTATCCTCTTCAAGATCATCG
AGGATTTTGTATCCTCTACAAGATCATAAACTTATCTGACACAAGAGGCG
GTGAAGGGCTGGGGCCGATTGCAGGGTGAAGGGCAGATAGAGAAGTTGCT
CGAGTTAAAAATCGAAGAATCCGAAGCTTGAACACATAAGGTCGGACATG
GGTCGGGCTTCTCTTGCTCGCCAGAGAGCGCGGTGAATTGTGGCGGTTTC
GTTGTCTTTAACCAAGGGCATTTTCCATCCGTAGACTACATATAGCACAG
ACGTTCTTCGGGTTGCGCGGGTTCCTGAACAACTAAAATGCGTCCCGAGT
GGGATGCGTGGGCTACAATCCGTTCCCCCTGAAGATATGATGAGATACAA
AACAATTTCTGGCGGGCTACTACTGCGGAATAAATGGCAAACACACGATA
CACACACGAATGCTCAGCATGTATGTCCCGATCGACACCAAGGGCGAAAA
TACGGTTGAAATCAACGATGGTAGACAGGATCTCTGTGTTCCTGTATCAC
TGGATTTCAGAGTCCACTGTCGGAAAAAACATCTTACGTGCAGAGTCGCG
TCTTCTTCTGACTCCACGATCGCCGCAGAAACCCACACTGTACTGTAGGC
CGTAGGGAAGAAGTCTGGGGCTCCGCGATTGAGGACGAAACAACATGGCT
GCGTTTGAAAAGCTAAGGATAACCCGTGATCTGGGGCAACGGAGATATTC
CAACAGTCATACGACCATATCACCACTCCCACGTAAAGCAAGAAATTTTG
GGCGCAGCTCCCACGTGGGGTGTGTTTCGGGCGATCCTTTCCAGGGAGAC
ACCCCGGGCAGTTGATGCAACGCAAAGCGGATGGCGTATGCGGCACAATG
ATGCACATGAACAAGAACAATCCCGGCATTTGTCGTTCCTCAACGCCAAC
TTGCAGATCACTGCAACCGCGCTACAGCACCAGATGATCATCGCATGAGA
GCACGTTACCGAGGTCTACAGTCTAGCTCGGCAGATGTATTTGTATCCAC
GGTGGACGAAGGCGCTGGGACCGAAGATTCAACTGCTCCGAAGGACCCCG
GAAAAATAAACTGCTGTGTGCAAGACACTTGAACCCGTTAAGAAGATGAC
AGAAAGTGATCAATCGATATTCATGCCCGTTGCCCCTTCGACTCCGTCAT
TTCTGCTTGGCCGGCCGGCTCGTCTCTCACCACGCTCCCGAAGGTCTCGT
GCCTTTGCTTGCCGCCAACCCCGTCTCGCACGAAAAGTTAGCAAGTTCCG
TCGGTTTTGGCGCCTCGACGTTTGCGCCGTCGTCGGCGACAAGATCACTG
CCGCGGCCGACAGCAGCGACGTGGTCTCCGTTGCGCGCAACGCCCCCGAC
GGATCAAAGCGGCCCCAGAACCCCCGACACCTAGCCACTGGAGCCGTGGC
GGCCGCTCTTGCGTCCTTTTTG
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig1006:3305..6326+

>mRNA_H-canaliculatus_F_contig1006.91.1 ID=mRNA_H-canaliculatus_F_contig1006.91.1|Name=mRNA_H-canaliculatus_F_contig1006.91.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=540bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1006:3305..6326+ (Hapterophycus canaliculatus Oshoro5f female)
ATGAACCTTCAGCTTCCTGACGCGTCGCACTTACACACCAGATGAACCTT
CAGCTTCCTGACGCGTCGCACTTACACACCAGGTCTCGTGCCTTTGCTTG
CCGCCAACCCCGTCTCGCACGAAAAGTTAGCAAGTTCCGTCGGTTTTGGC
GCCTCGACGTTTGCGCCGTCGTCGGCGACAAGATCACTGCCGCGGCCGAC
AGCAGCGACGTGGTCTCCGTTGCGCGCAACGCCCCCGACGGATCAAAGCG
GCCCCAGAACCCCCGACACCTAGCCACTGGAGCCGTGGCGGCCGCTCTTG
CGTCCTTTTTGGTCTCGTGCCTTTGCTTGCCGCCAACCCCGTCTCGCACG
AAAAGTTAGCAAGTTCCGTCGGTTTTGGCGCCTCGACGTTTGCGCCGTCG
TCGGCGACAAGATCACTGCCGCGGCCGACAGCAGCGACGTGGTCTCCGTT
GCGCGCAACGCCCCCGACGGATCAAAGCGGCCCCAGAACCCCCGACACCT
AGCCACTGGAGCCGTGGCGGCCGCTCTTGCGTCCTTTTTG
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