mRNA_H-canaliculatus_F_contig10058.90.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig10058.90.1
Unique NamemRNA_H-canaliculatus_F_contig10058.90.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
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BLAST of mRNA_H-canaliculatus_F_contig10058.90.1 vs. uniprot
Match: D7FU46_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FU46_ECTSI)

HSP 1 Score: 300 bits (769), Expect = 3.730e-89
Identity = 207/318 (65.09%), Postives = 223/318 (70.13%), Query Frame = 1 
Query:   22 SSSSSSAEGWELVVCQELAVEGKFTFKLPLQFLFPVHGSLKQAASAWRVRAKRERERQGLFELDEEAFASGMVLVRVSVSRARGLDAIXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXFGXXXXXXXXXXXXXXXXXXXXXXXLGTLGIEGAKMSSSMRKFGGRMKGMGVKAVAMARIASQASPTAHLRLGAVSVQEKILRQANFFVKVVYEPPAAPGSSSIGGDEIDLXXXXXXXAKTFAAGAEADRVVGVTNTEYGSVDPVWGTNANRGACPYNAPRLQHQVSGATRLDVVSDIT 975
            SS ++SAE WELVVCQELAVEGK+TFK+PLQFLFPVH SLK AA AWR RA++ER RQGLF  DEEAFA GMV+V VSVSRARGL  I  XXXXXXXXXX          XXXXXXXXXX                    G                       +G LGIEGAK+SSSMR FGGRMKGMGVKAVAMARIASQASP AHLRLGAVS +EKILRQANFFVKVVY PP +  S+S   D    XXXXXX +   A   E +RVVGVTNTEYGSV+PVWG NAN  ACPYNAPR +HQVSGATRLDVVSDIT
Sbjct:  363 SSLTASAEAWELVVCQELAVEGKYTFKIPLQFLFPVHNSLKHAALAWRARARKERHRQGLFSADEEAFAHGMVVVHVSVSRARGLGPIAAXXXXXXXXXXAPQSAQLLGGXXXXXXXXXXSNNPGQASPV----------GQASSGTGGGREGLPAAGGGRGGLVG-LGIEGAKVSSSMRAFGGRMKGMGVKAVAMARIASQASPAAHLRLGAVSSEEKILRQANFFVKVVYGPPLSANSTS---DXXXXXXXXXXGSGGLARPGEPERVVGVTNTEYGSVEPVWGANANLNACPYNAPRDKHQVSGATRLDVVSDIT 666
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BLAST of mRNA_H-canaliculatus_F_contig10058.90.1 vs. uniprot
Match: A0A6H5K1V3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K1V3_9PHAE)

HSP 1 Score: 143 bits (360), Expect = 6.110e-35
Identity = 115/196 (58.67%), Postives = 123/196 (62.76%), Query Frame = 1 
Query:  103 LPLQFLFPVHGSLKQAASAWRVRAKRERERQGLFELDEEAFASGMVLVRVSVSRARGLDAIXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXFGXXXXXXXXXXXXXXXXXXXXXXXLGTLGIEGAKMSSSMRKFGGRMKGMGVKAVAMARIASQASPTAHLRLGAVSVQEKILRQ 690
            +PLQFLFPVH S+K AA AWR RA++ER RQGLF  DEEAFA GMV+V VSVSRARGL  I XXXXXXXXXX                                         G     XXXXXXXXXXX            IEGAK+SSSM+ FGGRMKGMGVKAVAMARIASQASP AHLRLGAVS +EKILRQ
Sbjct:  354 IPLQFLFPVHNSVKHAALAWRARARKERNRQGLFSTDEEAFAHGMVVVHVSVSRARGLGPIAXXXXXXXXXXGAPQSAQLVGGGADAGGRATSNNQGQSSLVRKASFGARGGRGGLPATXXXXXXXXXXX------------IEGAKVSSSMKAFGGRMKGMGVKAVAMARIASQASPAAHLRLGAVSSEEKILRQ 537
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig10058.90.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FU46_ECTSI3.730e-8965.09Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5K1V3_9PHAE6.110e-3558.67Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig10058contigH-canaliculatus_F_contig10058:660..4247 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons4
Model size987
Cds size972
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig10058.90.1prot_H-canaliculatus_F_contig10058.90.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig10058 660..4232 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928633.8913426-CDS-H-canaliculatus_F_contig10058:659..7131622928633.8913426-CDS-H-canaliculatus_F_contig10058:659..713Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10058 660..713 -
1696845505.068611-CDS-H-canaliculatus_F_contig10058:659..7131696845505.068611-CDS-H-canaliculatus_F_contig10058:659..713Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10058 660..713 -
1622928633.902846-CDS-H-canaliculatus_F_contig10058:968..12111622928633.902846-CDS-H-canaliculatus_F_contig10058:968..1211Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10058 969..1211 -
1696845505.0771794-CDS-H-canaliculatus_F_contig10058:968..12111696845505.0771794-CDS-H-canaliculatus_F_contig10058:968..1211Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10058 969..1211 -
1622928633.914095-CDS-H-canaliculatus_F_contig10058:2789..33771622928633.914095-CDS-H-canaliculatus_F_contig10058:2789..3377Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10058 2790..3377 -
1696845505.0852406-CDS-H-canaliculatus_F_contig10058:2789..33771696845505.0852406-CDS-H-canaliculatus_F_contig10058:2789..3377Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10058 2790..3377 -
1622928633.9239137-CDS-H-canaliculatus_F_contig10058:4145..42321622928633.9239137-CDS-H-canaliculatus_F_contig10058:4145..4232Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10058 4146..4232 -
1696845505.094465-CDS-H-canaliculatus_F_contig10058:4145..42321696845505.094465-CDS-H-canaliculatus_F_contig10058:4145..4232Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10058 4146..4232 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928633.9393075-UTR-H-canaliculatus_F_contig10058:4232..42471622928633.9393075-UTR-H-canaliculatus_F_contig10058:4232..4247Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig10058 4233..4247 -
1696845505.1051486-UTR-H-canaliculatus_F_contig10058:4232..42471696845505.1051486-UTR-H-canaliculatus_F_contig10058:4232..4247Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig10058 4233..4247 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig10058.90.1

>prot_H-canaliculatus_F_contig10058.90.1 ID=prot_H-canaliculatus_F_contig10058.90.1|Name=mRNA_H-canaliculatus_F_contig10058.90.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=324bp
MASSSSSSAEGWELVVCQELAVEGKFTFKLPLQFLFPVHGSLKQAASAWR
VRAKRERERQGLFELDEEAFASGMVLVRVSVSRARGLDAIAAAAAAAAAA
GAAGGGGGGAEDGVSIAAGSAAAGGVPLAGSGQQQQQQGQSFGENGGSSS
AGIGAGGEGFGAGGGGLGTLGIEGAKMSSSMRKFGGRMKGMGVKAVAMAR
IASQASPTAHLRLGAVSVQEKILRQANFFVKVVYEPPAAPGSSSIGGDEI
DLLGGGGGGAKTFAAGAEADRVVGVTNTEYGSVDPVWGTNANRGACPYNA
PRLQHQVSGATRLDVVSDITAGE*
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mRNA from alignment at H-canaliculatus_F_contig10058:660..4247-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig10058.90.1 ID=mRNA_H-canaliculatus_F_contig10058.90.1|Name=mRNA_H-canaliculatus_F_contig10058.90.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=3588bp|location=Sequence derived from alignment at H-canaliculatus_F_contig10058:660..4247- (Hapterophycus canaliculatus Oshoro5f female)
GGCGGCGCTTTTGGTATGGCTTCCTCATCCTCATCCTCAGCCGAGGGGTG
GGAGCTGGTGGTGTGCCAGGAGCTTGCCGTGGAGGGGAAGTTCACCTTCA
AGGTGCGGCACAAGCGTGAGACGGGCGGTGAGGGGGGTGAGACGGGCGGT
GAGGGGGGTGATCTCGCCCAAAGCCGTGTGTGTGTGTGTGTGTGTGTGTG
TGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTG
TGTGTGTGTGTGTGTGTGTTTTGAAATCCCGACTCCAAATAAAAGAACTA
GCGTGTGTGTGCGTGCGGTTGACTGTAAAATCCCGATCCCCAAGCAAGGA
ATCAGCGCGCTTGTGTTTGTGTTTATGTGCGTGTCTGTTGTGGGCGAGGC
TCGCGGATGTTTTCCACCGGGTTGTTTTCGTTCCGTGTTACTTCGGCGGC
CCTGCCGATACAGAAACCAGGAGGCTCTGTGGAAAACACGACCACCATGG
CGCAGCGACCGCACATTTTGAGCGCGTTAGCCGCGTGTCTTCCTTGCACA
CGTGCATACCCAGGAAGACCTCTGAGCAAGGCGTTGGATCGTCTGTATCC
GCCGAATCTCACGGTAGCTCTCCTACTACGAGTAGCAGGTGTCGAATAAT
CACAGGAGACCCCCGCAGGGCGTTGGCATGCTTTTCTCTCTCTTTCTCTC
CTTCTCTCTGGCAATTTGTTGTTCCTCGATTTTGGCCGCGGGCTAGACTG
ACGTGCCTCGCAACAACAACAACAAGAACAACAACAACAACCACACCAAC
AGTAACGACGACGACGACGATAACGAGGACCAAACACCTCCCTCTCCCCC
GCAACTCCCTTCCCTCGCAGCTGCCGCTGCAATTCCTGTTCCCGGTTCAC
GGCTCCCTAAAGCAAGCCGCCTCCGCATGGCGGGTGCGCGCGAAGCGAGA
GCGAGAGCGCCAGGGTCTCTTCGAGCTCGACGAGGAGGCGTTCGCCAGCG
GGATGGTGCTGGTGAGGGTCAGCGTCTCCAGGGCCAGGGGGCTAGACGCG
ATCGCCGCTGCCGCAGCGGCGGCGGCGGCGGCGGGCGCTGCCGGCGGTGG
GGGAGGGGGTGCGGAGGACGGGGTTTCCATCGCGGCGGGTTCTGCGGCTG
CAGGTGGCGTGCCTCTGGCGGGGTCAGGCCAGCAGCAGCAGCAGCAGGGG
CAGTCGTTTGGAGAGAATGGCGGGTCTTCTTCGGCGGGGATAGGGGCTGG
CGGGGAGGGGTTCGGCGCGGGGGGGGGGGGGCTGGGAACGCTGGGGATCG
AGGGGGCTAAGATGTCTTCATCGATGAGGAAGTTCGGGGGGAGGATGAAG
GGGATGGGTGTCAAGGCGGTCGCGATGGCGAGGATCGCGTCCCAGGCGAG
CCCGACGGCGCACCTTCGTTTGGGTGCGGTGTCGGTGCAGGAGAAGATTC
TTCGGCAGGTGCGTTGTTGTTGTTGTCGCTACAAGTATTGTTGCTGTTGT
TGTTGTTGCTGTTGTTGTTGTTGCTGTTGTTGTTGTTGTTGTCTCCTTTT
CACGAGTCTCGCTCTCGACGCTGCTGGTGGTTTCGCTGTTGTTGCTGAGC
TCGGTACCGATAATGCTGTTGCTGCAGATATTTTTGCTGCTGTTCTTCTT
GTTTTTTGTGATCGAGGCGGCGACAATGACCGCAGCACACTTTATCACCG
TTGCGATAGCGTTTTCAGTCGCTTCGACCTCACTCCGTCCGGAACTCCCG
CGTGTCAGAAGTGAAGCAAACGGGGATGTGTGCGACGAATCTGCTGCGAC
GCACTCTTTCCGAGAAAGAAATCTCCCGTGTTGCACACGATGAAACTGAG
AGTCCTCCTGCAAGAAAGTTTGCTGCCTGCGTCTCAAAAGGCTCAACAGG
ACGAGCCTCGATGGAATGAGGCCTCACAGCCTACTATCCCCGGCGAAGTT
TTTGAAGAAACCTTACACACAATGTACCCTCACTGCTCGGAACTCAACAG
AAGCCTCGAGCTACGCCTCGCACGGCGTTCCTCATAGGGTGTTCCTACGG
TGTAGTTACGTTTTACTTCAAACACAAAAAGTTAACGTCGCGGAAGGAGT
CGCTCTCTTGAGACGAGACTAACGAGTGTTTCGTTGGATTATTTTGATGG
TTTTATCATCCCACTCGGGGCGCTGATTCGTCACCACCGAAAAGAGTGCG
ACGAAAACTCTCTTGGCCGAGGCTTTTTTCAGAGCCTGCTTCTTCCATGT
GGTGATGTAGTGCCCCTCTCTTTTTTTGTGGACCCTCTGGTGAAATATGC
CTGCGCGAGAGGTGCCAGGTACGCGCTGTGACGCTTCTGAGGCGATGAGA
GGGGGGAAAAAACGTTGGGGTCGCTCGAGCCCTGCTGTGCCTCCCCCCCC
CCCCACCTCACATCGCTAAACCCCGAAGTCGACACAATTCAGCCCCTTTT
TCCTTTTGTAAAAGGAAGCGAAAAATGTTTTGGTGTCCGAGCAATGTGTT
TTCATCCCCTACTCATCGTGACAGAACTATTCGTCTGAAGCGCAACAGAC
TGTCTGCGAGGGTGAATCCGGATTGAAGGATTTTCCAAGCACGCGTTCCG
CCCGATTCGAAGGGCCGAGCCGGAGGTTCGATGTAACGCGCACGGGGGTG
GGGCAGATGCAGCCGTTGCGAAGACGAGTGCCCTCGCGATGCCCAAAGTT
CGTGGTGTGCGGATTTTTCTCTACCGCATTTTGTTTTGTTGTTTAGCTTT
ACATTTCCCGGTAGAGGCGGGTGGAAGACTGTCGGGGGGCTACTTTTATG
CCTTCACTACTCCCTTCTACTCCACCCCCTCCCCCGTCCCCCGTCCCCCG
TCCCCCCTCCCCCCTCGCTTGCTCGACACATGTACATGTACGCACACCAC
ACGCGAAGGCATTCGAGCCCCTCAGGCCCGCCTCCCCCCCCCCTCCCGTC
CTGGAACACTCCAACCGTACGGGTCACCGTCTTCATTCTTCATCCCCCCC
CCCCCCCTCCCAAAACCGAATATCCATCACCCACAGGCAAATTTCTTCGT
GAAGGTGGTGTACGAACCCCCCGCCGCGCCTGGTAGCAGCTCGATAGGCG
GAGACGAGATCGATCTCCTCGGCGGCGGCGGCGGCGGCGCGAAGACTTTT
GCCGCGGGTGCCGAGGCGGACAGGGTGGTGGGCGTGACCAATACGGAGTA
CGGCAGCGTGGACCCGGTGTGGGGCACCAACGCGAACCGCGGCGCGTGTC
CGTACAACGCACCCAGGCTGCAGCACCAGGTTGGCTACTGTGTTGTTGTT
GTTGTTGTCGTTGTCGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGT
TGTTGTTGATGACGATGATCATGTTCCCGGCGATTGCGTTGATGATGCCG
ACGATTCACGGCGGCGACTTCCGTCCACGTTTACTGTCGGATTGTTCGCC
TTGAGCTCCTCTATTCCCGGTTACCCCCTTGAAGCATCGGCAACCCTGCT
CCCTCCCTCTTCTTTGGCCTTCATCTCAACACAGGTTTCTGGAGCCACTC
GGCTTGATGTCGTAAGCGACATCACTGCTGGTGAGTGA
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig10058:660..4247-

>mRNA_H-canaliculatus_F_contig10058.90.1 ID=mRNA_H-canaliculatus_F_contig10058.90.1|Name=mRNA_H-canaliculatus_F_contig10058.90.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=1944bp|location=Sequence derived from alignment at H-canaliculatus_F_contig10058:660..4247- (Hapterophycus canaliculatus Oshoro5f female)
ATGGCTTCCTCATCCTCATCCTCAGCCGAGGGGTGGGAGCTGGTGGTGTG
CCAGGAGCTTGCCGTGGAGGGGAAGTTCACCTTCAAGATGGCTTCCTCAT
CCTCATCCTCAGCCGAGGGGTGGGAGCTGGTGGTGTGCCAGGAGCTTGCC
GTGGAGGGGAAGTTCACCTTCAAGCTGCCGCTGCAATTCCTGTTCCCGGT
TCACGGCTCCCTAAAGCAAGCCGCCTCCGCATGGCGGGTGCGCGCGAAGC
GAGAGCGAGAGCGCCAGGGTCTCTTCGAGCTCGACGAGGAGGCGTTCGCC
AGCGGGATGGTGCTGGTGAGGGTCAGCGTCTCCAGGGCCAGGGGGCTAGA
CGCGATCGCCGCTGCCGCAGCGGCGGCGGCGGCGGCGGGCGCTGCCGGCG
GTGGGGGAGGGGGTGCGGAGGACGGGGTTTCCATCGCGGCGGGTTCTGCG
GCTGCAGGTGGCGTGCCTCTGGCGGGGTCAGGCCAGCAGCAGCAGCAGCA
GGGGCAGTCGTTTGGAGAGAATGGCGGGTCTTCTTCGGCGGGGATAGGGG
CTGGCGGGGAGGGGTTCGGCGCGGGGGGGGGGGGGCTGGGAACGCTGGGG
ATCGAGGGGGCTAAGATGTCTTCATCGATGAGGAAGTTCGGGGGGAGGAT
GAAGGGGATGGGTGTCAAGGCGGTCGCGATGGCGAGGATCGCGTCCCAGG
CGAGCCCGACGGCGCACCTTCGTTTGGGTGCGGTGTCGGTGCAGGAGAAG
ATTCTTCGGCAGCTGCCGCTGCAATTCCTGTTCCCGGTTCACGGCTCCCT
AAAGCAAGCCGCCTCCGCATGGCGGGTGCGCGCGAAGCGAGAGCGAGAGC
GCCAGGGTCTCTTCGAGCTCGACGAGGAGGCGTTCGCCAGCGGGATGGTG
CTGGTGAGGGTCAGCGTCTCCAGGGCCAGGGGGCTAGACGCGATCGCCGC
TGCCGCAGCGGCGGCGGCGGCGGCGGGCGCTGCCGGCGGTGGGGGAGGGG
GTGCGGAGGACGGGGTTTCCATCGCGGCGGGTTCTGCGGCTGCAGGTGGC
GTGCCTCTGGCGGGGTCAGGCCAGCAGCAGCAGCAGCAGGGGCAGTCGTT
TGGAGAGAATGGCGGGTCTTCTTCGGCGGGGATAGGGGCTGGCGGGGAGG
GGTTCGGCGCGGGGGGGGGGGGGCTGGGAACGCTGGGGATCGAGGGGGCT
AAGATGTCTTCATCGATGAGGAAGTTCGGGGGGAGGATGAAGGGGATGGG
TGTCAAGGCGGTCGCGATGGCGAGGATCGCGTCCCAGGCGAGCCCGACGG
CGCACCTTCGTTTGGGTGCGGTGTCGGTGCAGGAGAAGATTCTTCGGCAG
GCAAATTTCTTCGTGAAGGTGGTGTACGAACCCCCCGCCGCGCCTGGTAG
CAGCTCGATAGGCGGAGACGAGATCGATCTCCTCGGCGGCGGCGGCGGCG
GCGCGAAGACTTTTGCCGCGGGTGCCGAGGCGGACAGGGTGGTGGGCGTG
ACCAATACGGAGTACGGCAGCGTGGACCCGGTGTGGGGCACCAACGCGAA
CCGCGGCGCGTGTCCGTACAACGCACCCAGGCTGCAGCACCAGGCAAATT
TCTTCGTGAAGGTGGTGTACGAACCCCCCGCCGCGCCTGGTAGCAGCTCG
ATAGGCGGAGACGAGATCGATCTCCTCGGCGGCGGCGGCGGCGGCGCGAA
GACTTTTGCCGCGGGTGCCGAGGCGGACAGGGTGGTGGGCGTGACCAATA
CGGAGTACGGCAGCGTGGACCCGGTGTGGGGCACCAACGCGAACCGCGGC
GCGTGTCCGTACAACGCACCCAGGCTGCAGCACCAGGTTTCTGGAGCCAC
TCGGCTTGATGTCGTAAGCGACATCACTGCTGGTGAGTGAGTTTCTGGAG
CCACTCGGCTTGATGTCGTAAGCGACATCACTGCTGGTGAGTGA
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