mRNA_H-canaliculatus_F_contig10951.878.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female
Overview
Homology
BLAST of mRNA_H-canaliculatus_F_contig10951.878.1 vs. uniprot
Match: D8LD98_ECTSI (Ubiquitin carboxyl-terminal hydrolase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LD98_ECTSI) HSP 1 Score: 234 bits (596), Expect = 1.630e-69 Identity = 113/179 (63.13%), Postives = 133/179 (74.30%), Query Frame = 1 Query: 1 ETTPIHRIFGGCLKNQLKCMSCGHCSDKLDAFMDISLDLEKMGPDGSTKKFRSLHAAIESFTATETLGPGNEWKCGGCEKLVNAEKNLSVFKPPNALVVHLKRFGIADTTAKIKDHVHFEPKLNLGVSGPDRRFICYALCRVVVHKGNSMSHGHYFAYVRSSVG-WARMNDEVVTQASM 534 ETTPIHR+FGG L++QLKC CG CSD D FMD+++++EK+ G RSL AA+ FTA ETLG GNEWKCGGC KLV AEKNLSVFKPPNALV LKRFG + K+KDH+ F KLNL VSGP+R + Y L VVVH G +MS GHY+AYVRSS G WARMND VVT+ ++ Sbjct: 272 ETTPIHRVFGGYLRSQLKCSECGFCSDTFDPFMDLAMNVEKVDSSGVAMNERSLQAALRRFTAPETLGAGNEWKCGGCNKLVEAEKNLSVFKPPNALVFQLKRFGFTNGPRKVKDHISFGDKLNLEVSGPER-WANYDLTGVVVHSGKTMSSGHYYAYVRSSAGSWARMNDSVVTKVTL 449
BLAST of mRNA_H-canaliculatus_F_contig10951.878.1 vs. uniprot
Match: A0A6H5JKG0_9PHAE (Ubiquitin carboxyl-terminal hydrolase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JKG0_9PHAE) HSP 1 Score: 230 bits (586), Expect = 1.430e-67 Identity = 111/176 (63.07%), Postives = 131/176 (74.43%), Query Frame = 1 Query: 1 ETTPIHRIFGGCLKNQLKCMSCGHCSDKLDAFMDISLDLEKMGPDGSTKKFRSLHAAIESFTATETLGPGNEWKCGGCEKLVNAEKNLSVFKPPNALVVHLKRFGIADTTAKIKDHVHFEPKLNLGVSGPDRRFICYALCRVVVHKGNSMSHGHYFAYVRSSVG-WARMNDEVVTQ 525 ETTPIHR+FGG L++QL+C CG CSD D FMD+++++EK+ G K RSL AA+ FTA ETLG GNEWKCGGC KLV AEKNLSVFKPPNALV LKRFG + K+ DH+ F KLNL VSGP+R + Y L VV+H G +MS GHY+AYVRSS G WARMND VVT+ Sbjct: 333 ETTPIHRVFGGYLRSQLECSKCGFCSDTFDPFMDLAMNVEKVDSRGVAMKERSLQAALRRFTAPETLGAGNEWKCGGCNKLVEAEKNLSVFKPPNALVFQLKRFGFTNGPRKVNDHISFGDKLNLEVSGPER-WTNYDLTGVVIHSGKTMSSGHYYAYVRSSAGCWARMNDSVVTK 507
BLAST of mRNA_H-canaliculatus_F_contig10951.878.1 vs. uniprot
Match: A0A6H5JJN5_9PHAE (USP domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JJN5_9PHAE) HSP 1 Score: 206 bits (523), Expect = 3.710e-58 Identity = 102/171 (59.65%), Postives = 122/171 (71.35%), Query Frame = 1 Query: 1 ETTPIHRIFGGCLKNQLKCMSCGHCSDKLDAFMDISLDLEKMGPDGSTKKFRSLHAAIESFTATETLGPGNEWKCGGCEKLVNAEKNLSVFKPPNALVVHLKRFGIADTTAKIKDHVHFEPKLNLGVSGPDRRFICYALCRVVVHKGNSMSHGHYFAYVRSSVG-WARMND 510 ETTPI+RIFGG L+++LKC CGHCSD D FMD+S+DL ++ RS+ A+ F ATE LG GNEW+CGGC+K V AEK+LSVFKPPNALV+ LKRF +KIKDH+ F LNL VSGP+R + Y L VVVH G SMS GHY+AYVRS G WARM+D Sbjct: 403 ETTPINRIFGGYLRSRLKCTKCGHCSDTFDPFMDLSMDL--------SRGVRSIEVALRRFVATERLGSGNEWRCGGCKKPVQAEKSLSVFKPPNALVLQLKRFVFTRKASKIKDHIQFADVLNLSVSGPERSAL-YDLTGVVVHAGGSMSSGHYYAYVRSCAGMWARMDD 564
BLAST of mRNA_H-canaliculatus_F_contig10951.878.1 vs. uniprot
Match: UPI00155B10E7 (ubiquitin carboxyl-terminal hydrolase 23-like isoform X3 n=1 Tax=Vitis riparia TaxID=96939 RepID=UPI00155B10E7) HSP 1 Score: 142 bits (357), Expect = 6.640e-36 Identity = 78/181 (43.09%), Postives = 107/181 (59.12%), Query Frame = 1 Query: 1 ETTPIHRIFGGCLKNQLKCMSCGHCSDKLDAFMDISLDLEKMGPDGSTKKFRSLHAAIESFTATETLGPGN-EWKCGGCEKLVNAEKNLSVFKPPNALVVHLKRFGIADTTAKIKDHVHFEPKLNLG--VSGPDRRFICYALCRVVVHKGNSMSHGHYFAYVRSSVG-WARMNDEVVTQAS 531 E + +H+IFGG L++Q+KCM C +CS+K D F+D+SL++ K SLH A+ FTATE L G +++C C++ V A K L+V K P L +HLKRFG D KI VHF P ++L VSG + Y L V+VH G S GHY+ +VR+S G W ++D V Q S Sbjct: 52 EKSLVHKIFGGLLRSQVKCMQCSYCSNKFDPFLDLSLEIFKAD---------SLHKALVHFTATEQLDGGERQYQCQRCKQKVKALKQLTVHKAPYVLTIHLKRFGAHDPGQKIDKKVHFGPTMDLKPFVSGSYEENLKYTLYGVLVHAGWSTHSGHYYCFVRTSTGMWYSLDDNRVVQVS 223
BLAST of mRNA_H-canaliculatus_F_contig10951.878.1 vs. uniprot
Match: A0A438FBP0_VITVI (Ubiquitin carboxyl-terminal hydrolase 23 n=1 Tax=Vitis vinifera TaxID=29760 RepID=A0A438FBP0_VITVI) HSP 1 Score: 142 bits (357), Expect = 7.520e-36 Identity = 78/181 (43.09%), Postives = 107/181 (59.12%), Query Frame = 1 Query: 1 ETTPIHRIFGGCLKNQLKCMSCGHCSDKLDAFMDISLDLEKMGPDGSTKKFRSLHAAIESFTATETLGPGN-EWKCGGCEKLVNAEKNLSVFKPPNALVVHLKRFGIADTTAKIKDHVHFEPKLNLG--VSGPDRRFICYALCRVVVHKGNSMSHGHYFAYVRSSVG-WARMNDEVVTQAS 531 E + +H+IFGG L++Q+KCM C +CS+K D F+D+SL++ K SLH A+ FTATE L G +++C C++ V A K L+V K P L +HLKRFG D KI VHF P ++L VSG + Y L V+VH G S GHY+ +VR+S G W ++D V Q S Sbjct: 153 EKSLVHKIFGGLLRSQVKCMQCSYCSNKFDPFLDLSLEIFKAD---------SLHKALMHFTATEQLDGGERQYQCQRCKQKVKALKQLTVHKAPYVLTIHLKRFGAHDPGQKIDKKVHFGPTMDLKPFVSGSYEENLKYTLYGVLVHAGWSTHSGHYYCFVRTSTGMWYSLDDNRVVQVS 324
BLAST of mRNA_H-canaliculatus_F_contig10951.878.1 vs. uniprot
Match: F6I1Y1_VITVI (Ubiquitin carboxyl-terminal hydrolase n=14 Tax=Vitis TaxID=3603 RepID=F6I1Y1_VITVI) HSP 1 Score: 142 bits (357), Expect = 7.610e-36 Identity = 78/181 (43.09%), Postives = 107/181 (59.12%), Query Frame = 1 Query: 1 ETTPIHRIFGGCLKNQLKCMSCGHCSDKLDAFMDISLDLEKMGPDGSTKKFRSLHAAIESFTATETLGPGN-EWKCGGCEKLVNAEKNLSVFKPPNALVVHLKRFGIADTTAKIKDHVHFEPKLNLG--VSGPDRRFICYALCRVVVHKGNSMSHGHYFAYVRSSVG-WARMNDEVVTQAS 531 E + +H+IFGG L++Q+KCM C +CS+K D F+D+SL++ K SLH A+ FTATE L G +++C C++ V A K L+V K P L +HLKRFG D KI VHF P ++L VSG + Y L V+VH G S GHY+ +VR+S G W ++D V Q S Sbjct: 223 EKSLVHKIFGGLLRSQVKCMQCSYCSNKFDPFLDLSLEIFKAD---------SLHKALMHFTATEQLDGGERQYQCQRCKQKVKALKQLTVHKAPYVLTIHLKRFGAHDPGQKIDKKVHFGPTMDLKPFVSGSYEENLKYTLYGVLVHAGWSTHSGHYYCFVRTSTGMWYSLDDNRVVQVS 394
BLAST of mRNA_H-canaliculatus_F_contig10951.878.1 vs. uniprot
Match: A5B4K5_VITVI (USP domain-containing protein n=1 Tax=Vitis vinifera TaxID=29760 RepID=A5B4K5_VITVI) HSP 1 Score: 142 bits (357), Expect = 7.740e-36 Identity = 78/181 (43.09%), Postives = 107/181 (59.12%), Query Frame = 1 Query: 1 ETTPIHRIFGGCLKNQLKCMSCGHCSDKLDAFMDISLDLEKMGPDGSTKKFRSLHAAIESFTATETLGPGN-EWKCGGCEKLVNAEKNLSVFKPPNALVVHLKRFGIADTTAKIKDHVHFEPKLNLG--VSGPDRRFICYALCRVVVHKGNSMSHGHYFAYVRSSVG-WARMNDEVVTQAS 531 E + +H+IFGG L++Q+KCM C +CS+K D F+D+SL++ K SLH A+ FTATE L G +++C C++ V A K L+V K P L +HLKRFG D KI VHF P ++L VSG + Y L V+VH G S GHY+ +VR+S G W ++D V Q S Sbjct: 407 EKSLVHKIFGGLLRSQVKCMQCSYCSNKFDPFLDLSLEIFKAD---------SLHKALMHFTATEQLDGGERQYQCQRCKQKVKALKQLTVHKAPYVLTIHLKRFGAHDPGQKIDKKVHFGPTMDLKPFVSGSYEENLKYTLYGVLVHAGWSTHSGHYYCFVRTSTGMWYSLDDNRVVQVS 578
BLAST of mRNA_H-canaliculatus_F_contig10951.878.1 vs. uniprot
Match: UPI000C1CE81C (ubiquitin carboxyl-terminal hydrolase 23-like isoform X1 n=2 Tax=Olea europaea var. sylvestris TaxID=158386 RepID=UPI000C1CE81C) HSP 1 Score: 141 bits (356), Expect = 1.030e-35 Identity = 76/181 (41.99%), Postives = 108/181 (59.67%), Query Frame = 1 Query: 1 ETTPIHRIFGGCLKNQLKCMSCGHCSDKLDAFMDISLDLEKMGPDGSTKKFRSLHAAIESFTATETL-GPGNEWKCGGCEKLVNAEKNLSVFKPPNALVVHLKRFGIADTTAKIKDHVHFEPKLNLG--VSGPDRRFICYALCRVVVHKGNSMSHGHYFAYVRSSVG-WARMNDEVVTQAS 531 E + +H+IFGGCL++Q+KCM C +CSDK D F+D+SL++ K SL+ A+ FTA E L G +++C C++ V A K L++FK PN L +HLKRFG KI + F P L+L V+GP + Y L V+VH G S GHY+ +VR+S G W ++D V Q + Sbjct: 216 EKSLVHKIFGGCLRSQVKCMQCSYCSDKFDPFIDLSLEIMKAD---------SLYKALAHFTAKEQLDGGARQYQCEQCKEKVKALKQLTIFKAPNVLTIHLKRFGSHVQGQKIDKKIEFGPALDLKPFVTGPYDGDLKYTLYGVLVHAGWSTRSGHYYCFVRTSSGMWYSLDDNQVVQVN 387
BLAST of mRNA_H-canaliculatus_F_contig10951.878.1 vs. uniprot
Match: A0A7I8KKR7_SPIIN (Ubiquitin carboxyl-terminal hydrolase n=2 Tax=Spirodela intermedia TaxID=51605 RepID=A0A7I8KKR7_SPIIN) HSP 1 Score: 140 bits (352), Expect = 3.510e-35 Identity = 76/181 (41.99%), Postives = 107/181 (59.12%), Query Frame = 1 Query: 1 ETTPIHRIFGGCLKNQLKCMSCGHCSDKLDAFMDISLDLEKMGPDGSTKKFRSLHAAIESFTATETL-GPGNEWKCGGCEKLVNAEKNLSVFKPPNALVVHLKRFGIADTTAKIKDHVHFEPKLNLG--VSGPDRRFICYALCRVVVHKGNSMSHGHYFAYVRSSVG-WARMNDEVVTQAS 531 E + +H+IFGG L++Q+KC+ C CS+K D F+D+SL++ K +LH A+ FTA E L G +++C C++ V A K L++ K P L VHLKRFG A KI + FEP L+L VSGP+ + Y L V+VH G + GHY+ +VR+S G W +ND V Q S Sbjct: 231 EKSLVHKIFGGHLRSQVKCLQCSFCSNKFDPFLDLSLEIMKAD---------TLHKALSHFTAVEQLDGGAKQYQCQQCKQKVKAVKQLTIHKAPYVLTVHLKRFGTALLGQKIDKKIEFEPSLDLKKYVSGPNDGDLKYTLYGVLVHAGYATHSGHYYCFVRTSSGVWYSLNDHQVFQVS 402
BLAST of mRNA_H-canaliculatus_F_contig10951.878.1 vs. uniprot
Match: A0A5N6PQ47_9ASTR (Ubiquitin carboxyl-terminal hydrolase n=1 Tax=Mikania micrantha TaxID=192012 RepID=A0A5N6PQ47_9ASTR) HSP 1 Score: 138 bits (347), Expect = 1.630e-34 Identity = 75/177 (42.37%), Postives = 108/177 (61.02%), Query Frame = 1 Query: 13 IHRIFGGCLKNQLKCMSCGHCSDKLDAFMDISLDLEKMGPDGSTKKFRSLHAAIESFTATETL-GPGNEWKCGGCEKLVNAEKNLSVFKPPNALVVHLKRFGIADTTAKIKDHVHFEPKLNLG--VSGPDRRFICYALCRVVVHKGNSMSHGHYFAYVRSSVG-WARMNDEVVTQAS 531 +H+IFGG L+NQ+KCM C +CSDK DAF+D+SL++ + +L+ A +FT+ E L G +++C C++ V A K L+V+K PN L +HLKRFG + KI +V F P L+L V+GP + Y L V+VH G S GHY+ +VR+S G W ++D V Q S Sbjct: 240 VHKIFGGQLRNQVKCMQCNYCSDKFDAFLDLSLEILQAD---------TLYEAFANFTSKEHLDGGAKQYRCQQCKQKVKALKQLTVYKAPNVLTIHLKRFGCHMSGQKIDKNVLFSPTLDLKPFVTGPYDGDLTYTLYGVLVHAGWSTDSGHYYCFVRTSSGMWYALDDNRVFQVS 407 The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig10951.878.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-canaliculatus_F_contig10951.878.1 >prot_H-canaliculatus_F_contig10951.878.1 ID=prot_H-canaliculatus_F_contig10951.878.1|Name=mRNA_H-canaliculatus_F_contig10951.878.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=178bp ETTPIHRIFGGCLKNQLKCMSCGHCSDKLDAFMDISLDLEKMGPDGSTKKback to top mRNA from alignment at H-canaliculatus_F_contig10951:2245..4223+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-canaliculatus_F_contig10951.878.1 ID=mRNA_H-canaliculatus_F_contig10951.878.1|Name=mRNA_H-canaliculatus_F_contig10951.878.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=1979bp|location=Sequence derived from alignment at H-canaliculatus_F_contig10951:2245..4223+ (Hapterophycus canaliculatus Oshoro5f female)back to top Coding sequence (CDS) from alignment at H-canaliculatus_F_contig10951:2245..4223+ >mRNA_H-canaliculatus_F_contig10951.878.1 ID=mRNA_H-canaliculatus_F_contig10951.878.1|Name=mRNA_H-canaliculatus_F_contig10951.878.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=1068bp|location=Sequence derived from alignment at H-canaliculatus_F_contig10951:2245..4223+ (Hapterophycus canaliculatus Oshoro5f female)back to top |