mRNA_H-canaliculatus_F_contig10944.872.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig10944.872.1
Unique NamemRNA_H-canaliculatus_F_contig10944.872.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
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BLAST of mRNA_H-canaliculatus_F_contig10944.872.1 vs. uniprot
Match: A0A6H5JXS0_9PHAE (GT4 protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JXS0_9PHAE)

HSP 1 Score: 164 bits (414), Expect = 1.080e-39
Identity = 160/474 (33.76%), Postives = 214/474 (45.15%), Query Frame = 1 
Query:   10 TASMSILPDGLTEFDGPYRLKIGSSEAGVFAWWHVSDEHCTMLHDKGGNSVVRMESPMILDHVCSAAAVVRVYPVRKEWWANLVRGKEM-PSLGEDASVVSTSTGQITRLIFDLRSGVTEGILPVIPHVYESNATGKVVDDFMSPAGSSFKLTSRQDNFIVSSTNSIF-----DAHDLRS-RPIDDGVSSFQLVKADSVPTATTSLRVKIAVIGNQATISPGGASIHATGEGTNVLDTCLFEGQTMRK*AGQWI*MSALLNR**S*NAAKTDAMVYVLQIKWFHPLAR*TTTLRRETRRRSAPRSSLPPMSKPLTE--LSSARSIF*RTYQARFKYPLWTCPAPGDLP**SCSINKASKLPVSASSPRSRYKDSLHLR-------CA*P----WPSSCSSTSWTL*GGRISHR--VFRKSRKNLATSRPAPGR-------------VRRLSNGGKDHDAFLLQIGRLAGVSTRV 1326
            + S+S LP  L E +GPYRL+  + +  VFAW HV+DE CTMLHD  GN VV MES   +    SAAA  R   V +E WA+++R  +M  SLG DA V+ TS G  TRL+ DL       ++P+     E    G V     + A SSFKLTS Q+  IVSS +S F      A  LR    +D G +  +L++       T   RVKI+V G +AT   G  SI    EGTNV + CL E Q      G       +         A+T  ++ V   +        T  +RR   +  A  S  P       E  +   R +F    +    Y L T     ++P    S  +AS L +S +S     KDS           C  P    W S+    S  +   R+ H   V   + +N+ +  P   +             V  +SNGG D+DAFLLQ  RLAGVSTRV
Sbjct:  178 SVSVSTLPATLAECNGPYRLQAANIQVEVFAWSHVNDERCTMLHDTSGNCVVTMESLATIARTSSAAAAARGALVSEERWAHILRDADMFSSLGGDAKVICTSAGHTTRLVLDLVEPEHTAVVPLPKTAGEGGVDGSV-----ATATSSFKLTSEQNGSIVSSYHSSFHVRFSQAAGLRRIGTVDGGTAGSELLE-------TVPRRVKISVNGVEATTVLGIVSIDGIREGTNVFEFCLLEKQIEDPEQGTRPADGEVC-------IAQTSLIIEVFSAE--------THVVRRRPSQDGALSSRAPAGGTQGGEGGIEPRRIVFVVDLRVMDGYNLSTLHLSKNMP----SGFRASMLDLSCASGDLPVKDSFERHAVEVFRLCIKPPIEMWDSAQRQGSTVV---RLLHSALVGAATWENVTSRHPDVAQALLDLHRHLSAFDVLVMSNGGGDNDAFLLQAARLAGVSTRV 617
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BLAST of mRNA_H-canaliculatus_F_contig10944.872.1 vs. uniprot
Match: A0A6H5L3U7_9PHAE (GT4 protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5L3U7_9PHAE)

HSP 1 Score: 120 bits (301), Expect = 3.130e-25
Identity = 93/253 (36.76%), Postives = 130/253 (51.38%), Query Frame = 3 
Query:  756 VCIAESVIILECGEN*CYGVRPSNQM-----VSSAGAVDDNTEEGNEEAERPQIISSADVKAAYGTELSTLHLLTHLPSTF*VSTVDLSCSRGPTLI-ELFNKQGVEASRLRIQPPIEVQRLAPSPMRVTMAQLLFFDLVDAVRREDITSGFPEVAQELGNL*AGTWPRSTFVQ-RGQRPRRVPATNWEVGRSEHPRG-NLGAMIVGNVPPLVTGSTKLIGRSHFVAYNPSSSRNATELPVKLCHPVMDAVRV 1490
            VC+AE+ +ILE      + V   + M       S+G V   T EG  +  R  ++   D+K   G +LSTLHL+ HLP+ F  ST+DLSC  G   + +LF+K+G+E   L I+ P EV     +   VT+   L+  LV A    D+ S  P VA  L +L          V   G +               H R  NLGA+  G + P  +G+T ++G SH+VA+NP+  RNA  LP+K+CHPVMDA RV
Sbjct:  305 VCLAETAMILEIFTAEPHIVTGRSSMRRKLSPRSSGIV---TSEGGPQITR--VVFLGDLKVLDGYKLSTLHLMKHLPTNFRASTLDLSCVSGDLPVKDLFDKEGIEVFHLCIEIPNEVWNSVQA-QGVTIFAFLYSALVGAPTWNDVVSVHPGVALALSDLYHHLVKFDVLVMSNGGKDTDAYVLQTARLAGVHTRMVNLGAIAGGYMSPRFSGATSIVGPSHYVAHNPTVIRNAGGLPIKVCHPVMDAARV 551
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BLAST of mRNA_H-canaliculatus_F_contig10944.872.1 vs. uniprot
Match: A0A6H5KA95_9PHAE (GT4 protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KA95_9PHAE)

HSP 1 Score: 99.4 bits (246), Expect = 2.220e-18
Identity = 80/249 (32.13%), Postives = 118/249 (47.39%), Query Frame = 3 
Query:  759 CIAESVIILECGEN*CYGV-RPSNQMVSSAGAVDDNTEEGNEEAERPQIISSADVKAAYGTELSTLHLLTHLPSTF*VSTVDLSCSRGPTLIELFNKQGVEASRLRIQPPIEVQRLAPSPMRVTMAQLLFFDLVDAVRREDITSGFPEVAQELGNL*AGTWPRSTFV-QRGQRPRRVPATNWEVGRSEHPRG---NLGAMIVGNVPPLVTGSTKLIGRSHFVAYNPSSSRNATELPVKLCHPVMDAVRV 1490
            C+AE+V+ILE        + R S+     +G +    E    +    +++    +++  G  LSTL+L+ HLP  F VS +D+SC+ G T                     E QR +     VT+  LL+  LV A     +TS  P++A+ LG+L          V   G +     A    V R     G   NLGA+  G + P  +G+T LIG S FVA+NP+  R+   LPVK+CHPV+DA R+
Sbjct:  214 CMAETVLILEIFSTETQIIQRRSSSGTMPSGKIPYGVESYKGDTGSTRVVFLVGLESVDGYNLSTLNLMKHLPPNFRVSALDVSCTWGVTFYATTTWD-------------EAQRQS-----VTVGNLLYSMLVGAATWSSVTSALPDIARGLGDLYRHLTNFDVLVISNGAKD--ADAYLLHVARLAGVGGRVVNLGALAGGYMSPFFSGATALIGPSQFVAHNPAVHRHTGGLPVKVCHPVIDAARL 442
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BLAST of mRNA_H-canaliculatus_F_contig10944.872.1 vs. uniprot
Match: D7FK34_ECTSI (Glycosyltransferase, family GT4 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FK34_ECTSI)

HSP 1 Score: 79.3 bits (194), Expect = 2.480e-12
Identity = 58/156 (37.18%), Postives = 81/156 (51.92%), Query Frame = 3 
Query: 1035 LFNKQGVEASRLRIQPPIEVQRLAPSPMRVTMAQLLFFDLVDAVRREDITSGFPEVAQELGNL*AGTWPRSTFV-QRGQRPRRVPATNWEVGRSEHPRG---NLGAMIVGNVPPLVTGSTKLIGRSHFVAYNPSSSRNATELPVKLCHPVMDAVRV 1490
            + ++Q +E  RL I+ P E    A +   VT+  LL+  LV A     +TS  P++A+ LG+L          V   G +     A    V R     G   NLGA+  G + P  +G+T LIG S FVA+NP+  R+   LPVK+CHPVMDA R+
Sbjct:    1 MLDQQALEVFRLCIELPSETWDEA-NRQSVTVGNLLYSMLVGAATWSGVTSVLPDIARALGDLHRHLTKFDVLVISNGAKD--ADAYLLHVARLAGVGGRVVNLGALAGGYMSPFFSGATALIGPSQFVAHNPAVHRHTGGLPVKVCHPVMDAARL 153
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig10944.872.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A6H5JXS0_9PHAE1.080e-3933.76GT4 protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 Ta... [more]
A0A6H5L3U7_9PHAE3.130e-2536.76GT4 protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0... [more]
A0A6H5KA95_9PHAE2.220e-1832.13GT4 protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 Ta... [more]
D7FK34_ECTSI2.480e-1237.18Glycosyltransferase, family GT4 n=1 Tax=Ectocarpus... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig10944contigH-canaliculatus_F_contig10944:1714..3661 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Ec32 ortholog descriptionGlycosyl transferase, family 1
Ec32 orthologEc-06_010350.1
Hectar predicted targeting categoryother localisation
Exons4
Model size1490
Cds size717
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig10944.872.1prot_H-canaliculatus_F_contig10944.872.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig10944 1732..2466 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928765.818452-UTR-H-canaliculatus_F_contig10944:1713..17311622928765.818452-UTR-H-canaliculatus_F_contig10944:1713..1731Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig10944 1714..1731 +
1696845555.2245867-UTR-H-canaliculatus_F_contig10944:1713..17311696845555.2245867-UTR-H-canaliculatus_F_contig10944:1713..1731Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig10944 1714..1731 +
1622928765.859833-UTR-H-canaliculatus_F_contig10944:2466..27431622928765.859833-UTR-H-canaliculatus_F_contig10944:2466..2743Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig10944 2467..2743 +
1696845555.2566502-UTR-H-canaliculatus_F_contig10944:2466..27431696845555.2566502-UTR-H-canaliculatus_F_contig10944:2466..2743Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig10944 2467..2743 +
1622928765.8742228-UTR-H-canaliculatus_F_contig10944:2978..30851622928765.8742228-UTR-H-canaliculatus_F_contig10944:2978..3085Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig10944 2979..3085 +
1696845555.2664669-UTR-H-canaliculatus_F_contig10944:2978..30851696845555.2664669-UTR-H-canaliculatus_F_contig10944:2978..3085Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig10944 2979..3085 +
1622928765.8866122-UTR-H-canaliculatus_F_contig10944:3290..36611622928765.8866122-UTR-H-canaliculatus_F_contig10944:3290..3661Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig10944 3291..3661 +
1696845555.2748868-UTR-H-canaliculatus_F_contig10944:3290..36611696845555.2748868-UTR-H-canaliculatus_F_contig10944:3290..3661Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig10944 3291..3661 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928765.8345413-CDS-H-canaliculatus_F_contig10944:1731..22371622928765.8345413-CDS-H-canaliculatus_F_contig10944:1731..2237Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10944 1732..2237 +
1696845555.2378504-CDS-H-canaliculatus_F_contig10944:1731..22371696845555.2378504-CDS-H-canaliculatus_F_contig10944:1731..2237Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10944 1732..2237 +
1622928765.8447871-CDS-H-canaliculatus_F_contig10944:2255..24661622928765.8447871-CDS-H-canaliculatus_F_contig10944:2255..2466Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10944 2256..2466 +
1696845555.2471611-CDS-H-canaliculatus_F_contig10944:2255..24661696845555.2471611-CDS-H-canaliculatus_F_contig10944:2255..2466Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10944 2256..2466 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig10944.872.1

>prot_H-canaliculatus_F_contig10944.872.1 ID=prot_H-canaliculatus_F_contig10944.872.1|Name=mRNA_H-canaliculatus_F_contig10944.872.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=239bp
MSILPDGLTEFDGPYRLKIGSSEAGVFAWWHVSDEHCTMLHDKGGNSVVR
MESPMILDHVCSAAAVVRVYPVRKEWWANLVRGKEMPSLGEDASVVSTST
GQITRLIFDLRSGVTEGILPVIPHVYESNATGKVVDDFMSPAGSSFKLTS
RQDNFIVSSTNSIFDAHDLRSRPIDDGVSSFQLVKADSVPTATTSLRVKI
AVIGNQATISPGGASIHATGEGTNVLDTCLFEGQTMRK*
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mRNA from alignment at H-canaliculatus_F_contig10944:1714..3661+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig10944.872.1 ID=mRNA_H-canaliculatus_F_contig10944.872.1|Name=mRNA_H-canaliculatus_F_contig10944.872.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=1948bp|location=Sequence derived from alignment at H-canaliculatus_F_contig10944:1714..3661+ (Hapterophycus canaliculatus Oshoro5f female)
GCTTGCACTACAGCATCGATGTCGATACTTCCAGATGGTCTTACTGAGTT
TGATGGACCGTACCGCCTGAAAATAGGGAGCAGCGAAGCAGGAGTATTCG
CGTGGTGGCACGTCAGCGACGAGCACTGCACGATGCTGCACGACAAAGGC
GGAAACTCCGTGGTAAGGATGGAAAGTCCAATGATCCTCGACCACGTTTG
CTCGGCTGCTGCAGTGGTACGAGTCTATCCTGTGAGGAAGGAATGGTGGG
CGAATCTCGTGAGAGGCAAAGAAATGCCATCCCTCGGGGAGGACGCCAGT
GTCGTGTCCACCTCGACAGGACAAATCACCCGCTTGATTTTTGACCTACG
TAGTGGGGTCACCGAAGGTATTTTACCAGTCATCCCGCATGTATACGAAT
CGAACGCCACCGGTAAAGTGGTCGATGACTTTATGTCGCCGGCCGGGTCG
AGTTTTAAGCTTACGTCGCGACAAGATAACTTCATCGTTAGTTCCACCAA
CAGCATTTTCGATGCACATGACTTGTGAGCGAAATATTTTAGGCGAAGTC
GTCCGATTGACGACGGCGTATCAAGTTTTCAGCTGGTGAAAGCGGATAGT
GTTCCGACGGCGACGACCTCACTACGCGTCAAAATAGCTGTCATAGGAAA
TCAGGCTACAATATCGCCTGGCGGCGCGAGTATTCACGCGACCGGAGAAG
GGACAAACGTGTTGGACACTTGCCTTTTCGAGGGCCAGACGATGAGAAAA
TGAGCGGGGCAATGGATATGAATGTCTGCATTGCTGAATCGGTAATAATC
CTAGAATGCGGCGAAAACTGATGCTATGGTGTACGTCCTTCAAATCAAAT
GGTTTCATCCGCTGGCGCGGTAGACGACAACACTGAGGAGGGAAACGAGG
AGGCGGAGCGCCCCCAGATCATCTCTTCCGCCGATGTCAAAGCCGCTTAC
GGAACTGAGCTCAGCACGCTCCATCTTTTGACGCACCTACCAAGCACGTT
TTAAGTATCCACTGTGGACCTGTCCTGCTCGTGTGAGTCTCTTGTACGGA
GGAAAAAACAAACGTGATGAATCTGCGAAGTTATTTTAGCATCCCCACGT
CTGAAGGAAGAAACTCGGTGGTAACGTCTGACGTGTTCTTGACATCGTAT
GCTCGCGGAAAATTGTGACATCGTAACATCGTCGAGATCTCTGTTGGATC
GTATCACACTCTTGGGCGTAGCGAAGGGCCAAACTATTATCATCCCCTCA
CCCGAGTACGTTCAGCCGGGGACCTACCTTGATAGAGCTGTTCAATAAAC
AAGGCGTCGAAGCTTCCCGTCTCCGCATCCAGCCCCCGATCGAGGTACAA
AGACTCGCTCCATCTCCGATGCGTGATGTATGCAGCCTCTCGAACACATG
TTAAAAGCACACCTCAGGTTGGTTGTAATGCAAACTCAAACACTTCGCGC
TCTACTAGCGCGCCGCGCCATACACAGCCTTCAGCTTCACCTCCAACTTT
CGGCAATATTCAGCATTTCCGACACAGTAGCTTCACTGATTGCCGCAGAT
AAATGTGGAACTCTTTCCAACAACCAGGCGTAACCATGGCCCAGCTCCTG
TTCTTCGACCTCGTGGACGCTGTGAGGCGGGAGGATATCACATCGGGTTT
TCCGGAAGTCGCGCAAGAACTTGGCAACCTCTAGGCCGGCACCTGGCCGC
GTTCGACGTTTGTCCAACGGGGGCAAAGACCACGACGCGTTCCTGCTACA
AATTGGGAGGTTGGCCGGAGTGAGCACCCGCGTGGCAACTTAGGTGCGAT
GATCGTCGGCAACGTACCGCCGTTGGTCACGGGGTCTACCAAGCTCATCG
GGCGTTCTCACTTTGTCGCATACAATCCATCATCCAGCCGTAACGCTACC
GAGCTGCCGGTCAAGCTTTGCCACCCGGTCATGGACGCCGTGAGGGTT
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig10944:1714..3661+

>mRNA_H-canaliculatus_F_contig10944.872.1 ID=mRNA_H-canaliculatus_F_contig10944.872.1|Name=mRNA_H-canaliculatus_F_contig10944.872.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=1434bp|location=Sequence derived from alignment at H-canaliculatus_F_contig10944:1714..3661+ (Hapterophycus canaliculatus Oshoro5f female)
ATGTCGATACTTCCAGATGGTCTTACTGAGTTTGATGGACCGTACCGCCT
GAAAATAGGGAGCAGCGAAGCAGGAGTATTCGCGTGGTGGCACGTCAGCG
ACGAGCACTGCACGATGCTGCACGACAAAGGCGGAAACTCCGTGGTAAGG
ATGGAAAGTCCAATGATCCTCGACCACGTTTGCTCGGCTGCTGCAGTGGT
ACGAGTCTATCCTGTGAGGAAGGAATGGTGGGCGAATCTCGTGAGAGGCA
AAGAAATGCCATCCCTCGGGGAGGACGCCAGTGTCGTGTCCACCTCGACA
GGACAAATCACCCGCTTGATTTTTGACCTACGTAGTGGGGTCACCGAAGG
TATTTTACCAGTCATCCCGCATGTATACGAATCGAACGCCACCGGTAAAG
TGGTCGATGACTTTATGTCGCCGGCCGGGTCGAGTTTTAAGCTTACGTCG
CGACAAGATAACTTCATCGTTAGTTCCACCAACAGCATTTTCGATGCACA
TGACTTATGTCGATACTTCCAGATGGTCTTACTGAGTTTGATGGACCGTA
CCGCCTGAAAATAGGGAGCAGCGAAGCAGGAGTATTCGCGTGGTGGCACG
TCAGCGACGAGCACTGCACGATGCTGCACGACAAAGGCGGAAACTCCGTG
GTAAGGATGGAAAGTCCAATGATCCTCGACCACGTTTGCTCGGCTGCTGC
AGTGGTACGAGTCTATCCTGTGAGGAAGGAATGGTGGGCGAATCTCGTGA
GAGGCAAAGAAATGCCATCCCTCGGGGAGGACGCCAGTGTCGTGTCCACC
TCGACAGGACAAATCACCCGCTTGATTTTTGACCTACGTAGTGGGGTCAC
CGAAGGTATTTTACCAGTCATCCCGCATGTATACGAATCGAACGCCACCG
GTAAAGTGGTCGATGACTTTATGTCGCCGGCCGGGTCGAGTTTTAAGCTT
ACGTCGCGACAAGATAACTTCATCGTTAGTTCCACCAACAGCATTTTCGA
TGCACATGACTTGCGAAGTCGTCCGATTGACGACGGCGTATCAAGTTTTC
AGCTGGTGAAAGCGGATAGTGTTCCGACGGCGACGACCTCACTACGCGTC
AAAATAGCTGTCATAGGAAATCAGGCTACAATATCGCCTGGCGGCGCGAG
TATTCACGCGACCGGAGAAGGGACAAACGTGTTGGACACTTGCCTTTTCG
AGGGCCAGACGATGAGAAAATGAGCGAAGTCGTCCGATTGACGACGGCGT
ATCAAGTTTTCAGCTGGTGAAAGCGGATAGTGTTCCGACGGCGACGACCT
CACTACGCGTCAAAATAGCTGTCATAGGAAATCAGGCTACAATATCGCCT
GGCGGCGCGAGTATTCACGCGACCGGAGAAGGGACAAACGTGTTGGACAC
TTGCCTTTTCGAGGGCCAGACGATGAGAAAATGA
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