mRNA_H-canaliculatus_F_contig10924.863.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig10924.863.1
Unique NamemRNA_H-canaliculatus_F_contig10924.863.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
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BLAST of mRNA_H-canaliculatus_F_contig10924.863.1 vs. uniprot
Match: D7G002_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G002_ECTSI)

HSP 1 Score: 207 bits (528), Expect = 2.790e-62
Identity = 116/147 (78.91%), Postives = 127/147 (86.39%), Query Frame = 1 
Query:    1 MFAYAAATVLLWMIAPRVDHLNSGSEEIEVGEPTKPPVGGNVVVEKTPQPEEKARAKDRRSAKTGVRSGGRAPSSTVQGGQDVDQGPDPMTYALEQGHDEELGSVDDXXXXXVVYQNHQVHHAVINHSQPNPTQGSNDQASSRQYSR 441
            MFA+ AAT LLW+IAPRVDHLNSG EEIEV EP KPPVG N+V+EKTP PEEK R KDRRSAKTGVR+GG+APSSTVQGG   D GPDPMTYALE+G DEELGSVDDXXXXXVVYQNHQVHHAVINHS PNPTQ  +DQ +S++  R
Sbjct:  232 MFAFGAATFLLWIIAPRVDHLNSGIEEIEVAEPAKPPVG-NIVMEKTPLPEEKTRGKDRRSAKTGVRAGGKAPSSTVQGGGPADAGPDPMTYALEEGRDEELGSVDDXXXXXVVYQNHQVHHAVINHSNPNPTQMVDDQGASQREGR 377
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BLAST of mRNA_H-canaliculatus_F_contig10924.863.1 vs. uniprot
Match: A0A6H5KKN1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KKN1_9PHAE)

HSP 1 Score: 207 bits (527), Expect = 1.280e-61
Identity = 136/213 (63.85%), Postives = 151/213 (70.89%), Query Frame = 1 
Query:    1 MFAYAAATVLLWMIAPRVDHLNSGSEEIEVGEPTKPPVGGNVVVEKTPQPEEKARAKDRRSAKTGVRSGGRAPSSTVQGGQDVDQGPDPMTYALEQGHDEELGSVDDXXXXXVVYQNHQVHHAVI-NHSQPNPTQGSNDQASSRQY-----SRGYSRGTSGASYVTGSARSFDERSDGDFSETASSAYYAQGQGTGGRSFMSNSSRGESFDEY 621
            MFA+ AAT LLW+IAPRVDHLNSG EEIEV EP KPPVG N+V+EKTP PEEK R KDRRSAKTGVR+GG+APSSTVQGG   D GPDPMTYALE+G +++LGSVD XXXXX              NHS PNPTQ   D            +RGYSR TSG SY TG  RSFDERS+GD+SETAS          G +SFMS+SSRGES DEY
Sbjct:  232 MFAFGAATFLLWIIAPRVDHLNSGIEEIEVVEPAKPPVG-NIVMEKTPLPEEKTRGKDRRSAKTGVRAGGKAPSSTVQGGDPADAGPDPMTYALEEGRNKQLGSVDXXXXXXXXXXXXXXXXXXXXNHSNPNPTQMVEDXXXXXXXXXXXLNRGYSRATSGGSYATGGGRSFDERSEGDYSETASXXXXXXXXXXG-QSFMSSSSRGES-DEY 441
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig10924.863.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7G002_ECTSI2.790e-6278.91Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KKN1_9PHAE1.280e-6163.85Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig10924contigH-canaliculatus_F_contig10924:1824..4161 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-22_003450.1
Exons4
Model size639
Cds size639
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig10924.863.1prot_H-canaliculatus_F_contig10924.863.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig10924 1824..4161 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928764.46349-CDS-H-canaliculatus_F_contig10924:1823..20371622928764.46349-CDS-H-canaliculatus_F_contig10924:1823..2037Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10924 1824..2037 -
1696845554.5103438-CDS-H-canaliculatus_F_contig10924:1823..20371696845554.5103438-CDS-H-canaliculatus_F_contig10924:1823..2037Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10924 1824..2037 -
1622928764.4738162-CDS-H-canaliculatus_F_contig10924:2344..24811622928764.4738162-CDS-H-canaliculatus_F_contig10924:2344..2481Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10924 2345..2481 -
1696845554.5190609-CDS-H-canaliculatus_F_contig10924:2344..24811696845554.5190609-CDS-H-canaliculatus_F_contig10924:2344..2481Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10924 2345..2481 -
1622928764.4855793-CDS-H-canaliculatus_F_contig10924:2931..30811622928764.4855793-CDS-H-canaliculatus_F_contig10924:2931..3081Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10924 2932..3081 -
1696845554.5305998-CDS-H-canaliculatus_F_contig10924:2931..30811696845554.5305998-CDS-H-canaliculatus_F_contig10924:2931..3081Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10924 2932..3081 -
1622928764.496073-CDS-H-canaliculatus_F_contig10924:4023..41611622928764.496073-CDS-H-canaliculatus_F_contig10924:4023..4161Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10924 4024..4161 -
1696845554.5449648-CDS-H-canaliculatus_F_contig10924:4023..41611696845554.5449648-CDS-H-canaliculatus_F_contig10924:4023..4161Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10924 4024..4161 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig10924.863.1

>prot_H-canaliculatus_F_contig10924.863.1 ID=prot_H-canaliculatus_F_contig10924.863.1|Name=mRNA_H-canaliculatus_F_contig10924.863.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=213bp
MFAYAAATVLLWMIAPRVDHLNSGSEEIEVGEPTKPPVGGNVVVEKTPQP
EEKARAKDRRSAKTGVRSGGRAPSSTVQGGQDVDQGPDPMTYALEQGHDE
ELGSVDDDDDEEVVYQNHQVHHAVINHSQPNPTQGSNDQASSRQYSRGYS
RGTSGASYVTGSARSFDERSDGDFSETASSAYYAQGQGTGGRSFMSNSSR
GESFDEYSHVQQ*
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mRNA from alignment at H-canaliculatus_F_contig10924:1824..4161-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig10924.863.1 ID=mRNA_H-canaliculatus_F_contig10924.863.1|Name=mRNA_H-canaliculatus_F_contig10924.863.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=2338bp|location=Sequence derived from alignment at H-canaliculatus_F_contig10924:1824..4161- (Hapterophycus canaliculatus Oshoro5f female)
ATGTTCGCGTACGCTGCGGCGACGGTGCTGCTCTGGATGATCGCTCCCCG
AGTAGACCACCTCAACAGCGGCAGCGAGGAGATCGAGGTCGGAGAGCCTA
CCAAGCCGCCCGTGGGCGGGAACGTGGTCGTCGAGAAGGTGGGTCGGTCG
GCTTCTCTTGACAGCCGGGCCATGCCGTGCACGCGAGGCCGTATCGCGCC
CTGTCATAGCCTCATGGTATCGTTCGAGAGCATTGCTCGACGATCTCTGG
CGTCAAGTTGATAGAGAAAGACATCACGACGCCGTAGGAACATCTCGTGA
GGGATGCCGTGTGAGACCTACCTCGAGGTTGCTGTATCGAGTTCGCAGAT
TTTTTTCATGTCAGTTTCGTGACAGCGGCGGAGCGAGAGATAGATGGGTC
ACGCGAGGCTGACTTCTACGGAAATTATCTCAGAATGGACGCGGTGTTCC
GCCGCAATCCGCTTTCTCAGCCGTTCGTGACGGCGATTCCCGCGGCCTCT
GGGAGATTCGAAGGGCAAGGGAAGGATGCTGTCGAAACTAGTCACCTGTT
CTCCTACTCAAGTGTCCGGTTGCTCTACTGTTGGCAGTAGCTACTGTATC
GTAGCAGTGTTCATTTCCGAGTAGGGAAACAGAGTCCCCCGTCGAAGGAA
GTGCCTGAGTTGGTGGATGGACTGTTCATCCTGTCTCCTCGCCACCTCGA
TCCTCCTCTCCCCGTCGTCTCTCCCTTCGTCCACCCTCCTATTGATGTTG
ACGCCCTACGGTACCCTTGCTATTTCTTCTGGTGGAATGGTACTCCGCGC
CTCTCATCTCCCCATCCATCCTCCCTTCCTCTTCTTCATGGCTCCCGTCG
ACGCCCCCCCCCCCAAAAAACACACTTACACACAAAGGGTGGGTGGTTGT
CCCCATCCTCCCTTCCTTGCCCCCCCCGTACACCCCATACACGCCAGGCC
GTGCGTCCCTCCTTTTTTCATCGTCCACGCCTAAACTCCCCTGTCCTTAC
TTGACGTCCCCCCTCGTTCATCTTTCTACGTATCCACATACCTGGTACAT
ATTTATGTCTTTTTTTTCTTCTTTTTTCAGACACCGCAGCCCGAGGAGAA
GGCGAGGGCGAAGGACCGCCGCAGCGCCAAGACGGGCGTCCGCTCGGGAG
GTAGAGCGCCCAGCTCGACGGTGCAGGGAGGCCAGGACGTCGACCAAGGG
CCGGACCCGATGACCTACGCTCTGGAGCAGGTGACTCGCCGTTCACCATC
GACGGGGCGAATCGCCTGATTCTTCGGTCGATGGCCGCGCAGTTAGATGT
GTGTCTTGTGTGTGTTTACCCTTGCCTGCGTGCGGCCATGGAGATTCGTG
TCCGCGTTAACCGGCGGCCTCTGCAGGAAACGAGAGGGGGTGGGAGGGGG
TAGCGGTCGTGCTGTCCTGTGGTGGCGGATGAGGCTCTGTTTTTGGTGTG
CGTGCGAGAGGGCTACGACGAAGGCCTCCACGCGGTGGTCGCAAGTGGGG
GGTAGTGGGTAACGCCGATGGTGCTTGAGACTTTCCACGAATCCTCGTGC
CAGCGACTGCTCTTGACGCGCTTGAAAATCTCCTGCGCTCCCACAAGATA
CCGGGTCTCGCAGCACGTTTATCACACAATTTGAAACAAGATAAGTGGCT
GACGAATGCTGTGCACGCTGCAAAATTCAGGGTCACGACGAAGAGCTTGG
GTCGGTGGACGACGATGATGACGAGGAGGTGGTTTACCAGAACCACCAGG
TGCACCACGCCGTCATCAACCACAGCCAGCCAAACCCCACCCAGGGGTCT
AACGACCAGGCATCGAGGTGAGAGAGCGATGGCGCAATTTTCACTCCTCG
ATGGCACAACTATTCACGCCTTGGAAAATTCGGAGGGTGGTTGGTGCAAC
AGAGTCCTCCTTGTTGCAACTGTGCGTCTGCGTTGCTGACGGATGCTCTC
TAGGTGACCGCGATGTCTTAAGAGTCCCTGATACCCATGTCGCTTCCCCC
CCCCCCTCCCCGCTGCGCATCCACCGTGCCTCTCCCGGCGTTCACCTTGC
GGTCTGTTTCTCGTGCGATTGAAACGGCCGAATAACGACGCGACATCAAA
ACAACAAACAAACAAAAAAAAAAGCAGGCAGTACAGCAGGGGCTACAGCC
GTGGCACGAGCGGGGCCAGCTACGTCACCGGCAGCGCGCGGTCCTTCGAC
GAACGATCAGACGGAGACTTCTCCGAAACGGCATCCTCGGCGTACTACGC
GCAGGGGCAGGGCACTGGGGGGCGCTCCTTCATGTCGAACAGCAGCAGAG
GCGAAAGCTTCGACGAGTACAGTCATGTCCAGCAGTAG
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig10924:1824..4161-

>mRNA_H-canaliculatus_F_contig10924.863.1 ID=mRNA_H-canaliculatus_F_contig10924.863.1|Name=mRNA_H-canaliculatus_F_contig10924.863.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=1278bp|location=Sequence derived from alignment at H-canaliculatus_F_contig10924:1824..4161- (Hapterophycus canaliculatus Oshoro5f female)
ATGTTCGCGTACGCTGCGGCGACGGTGCTGCTCTGGATGATCGCTCCCCG
AGTAGACCACCTCAACAGCGGCAGCGAGGAGATCGAGGTCGGAGAGCCTA
CCAAGCCGCCCGTGGGCGGGAACGTGGTCGTCGAGAAGATGTTCGCGTAC
GCTGCGGCGACGGTGCTGCTCTGGATGATCGCTCCCCGAGTAGACCACCT
CAACAGCGGCAGCGAGGAGATCGAGGTCGGAGAGCCTACCAAGCCGCCCG
TGGGCGGGAACGTGGTCGTCGAGAAGACACCGCAGCCCGAGGAGAAGGCG
AGGGCGAAGGACCGCCGCAGCGCCAAGACGGGCGTCCGCTCGGGAGGTAG
AGCGCCCAGCTCGACGGTGCAGGGAGGCCAGGACGTCGACCAAGGGCCGG
ACCCGATGACCTACGCTCTGGAGCAGACACCGCAGCCCGAGGAGAAGGCG
AGGGCGAAGGACCGCCGCAGCGCCAAGACGGGCGTCCGCTCGGGAGGTAG
AGCGCCCAGCTCGACGGTGCAGGGAGGCCAGGACGTCGACCAAGGGCCGG
ACCCGATGACCTACGCTCTGGAGCAGGGTCACGACGAAGAGCTTGGGTCG
GTGGACGACGATGATGACGAGGAGGTGGTTTACCAGAACCACCAGGTGCA
CCACGCCGTCATCAACCACAGCCAGCCAAACCCCACCCAGGGGTCTAACG
ACCAGGCATCGAGGGTCACGACGAAGAGCTTGGGTCGGTGGACGACGATG
ATGACGAGGAGGTGGTTTACCAGAACCACCAGGTGCACCACGCCGTCATC
AACCACAGCCAGCCAAACCCCACCCAGGGGTCTAACGACCAGGCATCGAG
CAGGCAGTACAGCAGGGGCTACAGCCGTGGCACGAGCGGGGCCAGCTACG
TCACCGGCAGCGCGCGGTCCTTCGACGAACGATCAGACGGAGACTTCTCC
GAAACGGCATCCTCGGCGTACTACGCGCAGGGGCAGGGCACTGGGGGGCG
CTCCTTCATGTCGAACAGCAGCAGAGGCGAAAGCTTCGACGAGTACAGTC
ATGTCCAGCAGTAGCAGGCAGTACAGCAGGGGCTACAGCCGTGGCACGAG
CGGGGCCAGCTACGTCACCGGCAGCGCGCGGTCCTTCGACGAACGATCAG
ACGGAGACTTCTCCGAAACGGCATCCTCGGCGTACTACGCGCAGGGGCAG
GGCACTGGGGGGCGCTCCTTCATGTCGAACAGCAGCAGAGGCGAAAGCTT
CGACGAGTACAGTCATGTCCAGCAGTAG
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