mRNA_H-canaliculatus_F_contig10051.86.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig10051.86.1
Unique NamemRNA_H-canaliculatus_F_contig10051.86.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
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BLAST of mRNA_H-canaliculatus_F_contig10051.86.1 vs. uniprot
Match: D8LES5_ECTSI (UVR domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LES5_ECTSI)

HSP 1 Score: 347 bits (891), Expect = 5.810e-113
Identity = 180/198 (90.91%), Postives = 190/198 (95.96%), Query Frame = 1 
Query:   52 RREATLTEREGFAVAKKVLPEGGEGLEMDLEALRAMRSEVNKLKRSMRRAVEEEDYKTAGELRNQMSAIRAKDPLYVVSDLLGVAISKEKFKRAARLRDAKDWILRESRGSVFEVDRLVCLGNKASNIITTDPEGATVRRFLRKDQVQEITRTGQIQLPVWSPDGKMVAFSVLKAGSGGAPIESARILVYRESGSLVV 645
            RREA LTEREGFA+ KKVLP GGEGLEMDLE LR MRS VNK+KRSMRRAVEEEDYKTAG+LRN+M+AIRAKDPLYVVSDLLGVA+SKEKFKRAARLRDAKDWILRESRGSVFEVDRLVCLG+KASNIITTDPEGATVRRFLR DQV EI+RTGQIQLPVWSPDGKMVAFSVLKAGSGGAPIESA+ILVYRESGSLV+
Sbjct:  177 RREAPLTEREGFAMVKKVLPGGGEGLEMDLEGLRDMRSNVNKIKRSMRRAVEEEDYKTAGDLRNEMAAIRAKDPLYVVSDLLGVAVSKEKFKRAARLRDAKDWILRESRGSVFEVDRLVCLGDKASNIITTDPEGATVRRFLRNDQVAEISRTGQIQLPVWSPDGKMVAFSVLKAGSGGAPIESAKILVYRESGSLVL 374
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BLAST of mRNA_H-canaliculatus_F_contig10051.86.1 vs. uniprot
Match: A0A7S3XSM8_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XSM8_HETAK)

HSP 1 Score: 75.1 bits (183), Expect = 3.910e-12
Identity = 33/78 (42.31%), Postives = 54/78 (69.23%), Query Frame = 1 
Query:  394 VDRLVCLGNKASNIITTDPEGATVRRFLRKDQVQEITRTGQIQLPVWSPDGKMVAFSVLKAGSGGAPIESARILVYRE 627
            VDRL  +  + S+I+T   +G+ VR+ L + ++QE+TR+GQ+Q P WSPDG+ +AF+ ++ G G   I  AR+++Y E
Sbjct:    4 VDRLCVMAAQGSSIVTCKRDGSGVRKLLPRTELQELTRSGQLQQPTWSPDGQKIAFTAMRIGEG--KIAEARLVIYNE 79
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BLAST of mRNA_H-canaliculatus_F_contig10051.86.1 vs. uniprot
Match: A0A6H5KNT6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KNT6_9PHAE)

HSP 1 Score: 67.8 bits (164), Expect = 2.900e-10
Identity = 35/42 (83.33%), Postives = 35/42 (83.33%), Query Frame = 1 
Query:   52 RREATLTEREGFAVAKKVLPEGGEGLEMDLEALRAMRSEVNK 177
            RRE  LTEREGFAV KKVLP GGEGLEMDLE LR MRS VNK
Sbjct:  166 RREVPLTEREGFAVVKKVLPGGGEGLEMDLEGLRNMRSNVNK 207
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig10051.86.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D8LES5_ECTSI5.810e-11390.91UVR domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A7S3XSM8_HETAK3.910e-1242.31Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A6H5KNT6_9PHAE2.900e-1083.33Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig10051contigH-canaliculatus_F_contig10051:46..4604 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score349.4
Seed ortholog evalue1.3e-93
Seed eggNOG ortholog2880.D8LES5
EggNOG OGs2EPPI@1,2SSUW@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionWD40/YVTN repeat-like-containing domain
Ec32 orthologEc-21_005390.1
Exons5
Model size675
Cds size675
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig10051.86.1prot_H-canaliculatus_F_contig10051.86.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig10051 46..4604 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928633.5206034-CDS-H-canaliculatus_F_contig10051:45..2221622928633.5206034-CDS-H-canaliculatus_F_contig10051:45..222Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10051 46..222 +
1696845504.8603132-CDS-H-canaliculatus_F_contig10051:45..2221696845504.8603132-CDS-H-canaliculatus_F_contig10051:45..222Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10051 46..222 +
1622928633.5387156-CDS-H-canaliculatus_F_contig10051:2061..21511622928633.5387156-CDS-H-canaliculatus_F_contig10051:2061..2151Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10051 2062..2151 +
1696845504.8703632-CDS-H-canaliculatus_F_contig10051:2061..21511696845504.8703632-CDS-H-canaliculatus_F_contig10051:2061..2151Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10051 2062..2151 +
1622928633.5541034-CDS-H-canaliculatus_F_contig10051:2832..29391622928633.5541034-CDS-H-canaliculatus_F_contig10051:2832..2939Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10051 2833..2939 +
1696845504.8800266-CDS-H-canaliculatus_F_contig10051:2832..29391696845504.8800266-CDS-H-canaliculatus_F_contig10051:2832..2939Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10051 2833..2939 +
1622928633.5811496-CDS-H-canaliculatus_F_contig10051:3817..39321622928633.5811496-CDS-H-canaliculatus_F_contig10051:3817..3932Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10051 3818..3932 +
1696845504.8924904-CDS-H-canaliculatus_F_contig10051:3817..39321696845504.8924904-CDS-H-canaliculatus_F_contig10051:3817..3932Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10051 3818..3932 +
1622928633.607379-CDS-H-canaliculatus_F_contig10051:4418..46041622928633.607379-CDS-H-canaliculatus_F_contig10051:4418..4604Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10051 4419..4604 +
1696845504.9031818-CDS-H-canaliculatus_F_contig10051:4418..46041696845504.9031818-CDS-H-canaliculatus_F_contig10051:4418..4604Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10051 4419..4604 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig10051.86.1

>prot_H-canaliculatus_F_contig10051.86.1 ID=prot_H-canaliculatus_F_contig10051.86.1|Name=mRNA_H-canaliculatus_F_contig10051.86.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=225bp
GGGGGGGGAGAGGGTRARREATLTEREGFAVAKKVLPEGGEGLEMDLEAL
RAMRSEVNKLKRSMRRAVEEEDYKTAGELRNQMSAIRAKDPLYVVSDLLG
VAISKEKFKRAARLRDAKDWILRESRGSVFEVDRLVCLGNKASNIITTDP
EGATVRRFLRKDQVQEITRTGQIQLPVWSPDGKMVAFSVLKAGSGGAPIE
SARILVYRESGSLVVRPLFRCPLS*
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mRNA from alignment at H-canaliculatus_F_contig10051:46..4604+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig10051.86.1 ID=mRNA_H-canaliculatus_F_contig10051.86.1|Name=mRNA_H-canaliculatus_F_contig10051.86.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=4559bp|location=Sequence derived from alignment at H-canaliculatus_F_contig10051:46..4604+ (Hapterophycus canaliculatus Oshoro5f female)
GGGGGGGGGGGGGGGGGGGGGGGGGCGGGGGCCGGGGGAGGCACGAGAGC
ACGAAGGGAGGCGACGCTGACGGAGCGGGAGGGCTTCGCGGTGGCGAAGA
AGGTGTTGCCGGAGGGAGGGGAGGGGCTGGAGATGGACCTGGAGGCGCTG
AGGGCGATGCGCTCCGAAGTTAACAAGGTGTGTGTGTGTGTGTGTGTGTG
TGTGTGTGTGTGTGTCTGTTTCTGTGTCTCTCTGTGTGCGTGTGCGCGCG
TGTGTGTGCGTGTGTGTGTTGTGCACGTGGCAGGTGCGGTGTGCAGGCGC
GAGAGAGAGATGAGAGGGTGTCTTTGTGTGAGCGAAAGTCTTGTGACGTG
TTTCTTCTTTTGTGTTTTCGACCGCATCAGCATGACGGGCCGACGGCGTG
ACGCAAGTCGCTGCCGGCGGGATGACGGATGATGGTATGCGCAATGCCAA
TCCACGAACCCCGCTACCCGCCTTTCCCTTCCCTCCCCTGGAGACGCTTG
CTTGTGTGCGATTGTGGATCATGTGTCTCAGCGTTAACCGCCACAGCTAG
CACCCACGAAAACACCGGAATAATTGTCACGCCATGTGTGCCCGTTGTGG
TGCCGTCTTTGTCTCACTGCTGCCTGGCTCGGGGGCGTGGGGGAGTGTCC
GAGAACGCCCAGGCTCGAGCAAGCTTAATCGCGACAGCCAACCCCATACC
GCGCTTGTTGACCTTTTGCGCAAGGCCTGGAGTTTGTTCGCCTATCTTGC
GTGTCTGCTCGTGAGCCTTTGCTTGCTTTTCTAGGGCACAGCAGTAGAGC
ACACTGATCTGCCTACCGACCAGCGAAACGCTTGAACCTCGGCTGGACGA
ATGAGAGCAGACGCCCCAGCCCACGCTTGAGCAGATGCGTATATACCCTA
GCGACAAAACAACAAACACGCGATGAGATTTCGTTGCATCCCGACCCCCC
GAAGTAAGAATCAAAGACAGATGGAGAGGTGAAAAAGGGGAAACGAACTT
CCGGCGCCACGCAGCGCGTGTAAGTTCTGGCGGCGTTTTGGCTCGACCAC
AAGAACTCTCCCGGCGTGTGTTTTGTTCGGTGACTCGTGGCTGGTGTTCG
GCGCAAACGCCGGCGCCCTTTGTTCGTCGTGCTTGGCGTGCCCAACTCCG
GGACTGCGAGCATGACGCCGCCGCGCTTCGATAGAAACCAGCGCTTCCTG
TGAGGGCTTGGGGTGGTTTTCGTTCCCTGCGGTGGTTGCGTTGAGTCTAA
TCAGAGGCTCCAGCAGCACCAACATAGGCACCAGCACCAGCAAAAGCCGC
AGCTACATCCCACACGGCCGTGCTACTACGCGAAATTATTTTCATCGAGT
TGGTGCCGCGATGTCGCTCGCGAGGATATTCGGTAACCCTCAGGGGCGGC
GTGGCACTCATCTTCCACGCGCTCTGTTTCTCGTGGTCCGCGGTCAGTTG
ACGACCGCAGCGTGCATTTCCGCTCGCACCTAACCGCGGAGACGAAGGGA
GAGAGGTAGATCCGTCGTCCAACTCACTCACTTCGTCCCCATTTCTCGTT
TCTCGTCGGTCTGGTCGAATCCGCTCGTACGTCCCCTGACTTCAGGTCAG
GCCCCGGCGGCCGTTGGACCACCAACCATGTTGCCGTCGCCCGTCTTGTC
GCCCGTGTCTCTTGCAAGAGACGCCCGTGTTCCCCACCTGCTTGGTGGTT
ACCACCCCGGATCGTGCGAAGGCGATGGGAATATACGGGGGTGTACGCCC
AGCGAACCCTTGTCCAAATCCCCTGTTCCTGTTAAATATATGGACCGTAT
TACAAAAATCTAGAGAATACTAGCCGCCGTCTCGTCGTTTTGCTATCGGC
TGTGCTGCAACTCTTCTGCATTACGCGTGCGATCGATGTTTCCCAAGGAG
GACCCCCTTAGGCAAGGCTTATATACTCGTGTACCTAGTCGAGGTTAACC
TTCTGTTGCTGACACATCCTCCTCTCTCCTGGCCTTTTCTGTCTCTTCCC
CTTCTGTACCGAGTAGCTCAAGCGCAGCATGCGTCGGGCGGTTGAAGAGG
AGGACTACAAGACCGCTGGAGAACTGAGGAACCAAATGTCGGCGATAAGG
GCGAAGGTAGGTAGGGCTTCGACGCTTTTGCGCTACGATTCTTCAGGAGT
CCGCTCTCGCCCTCGCGCTACTTGTCTGTGGTGTGACGGCGATCTAAACG
TATGTGTTGGCGTGAAAAGGTACGATGATGCTGCGGCAGGAAGCCTCAGG
GGCAAGAGGGCTTCGGCTTGGAGGGCGAACGCTGAGGTGAAGTCGTCGCT
TCAGACGCCTCCCTCGAAGAGGGTGGAGAATAAGACGGAAGCGATCAGCC
GAGACTTTGTTTTGTGCGCCGCTTCTGCAACGTGACAATCCCCCCCCCCT
TTTCTGTTCATACGTTTGTTCCAACGTTACACATCAATGAAGCCTCATTT
TTTGGAACTCAACAGCAGCCTCGAGCTACGCCTCGCACGATGTACCTCAG
GAGGTGTTCCTGCGGTTTTGTTGTGCTTTTCTTTCAAAGAAGTTGTGCAA
GAACAGCCACGCGCCGGTGGCCCGGGGACGAGGCAGGACCGGCGTCTCAA
CTCGACAGAGGATGCCTCGGTCGATGCTGCGGTCAAACTACGCAGGCGAT
CGATCTAGCTCCCCCCCCCCCCCCCCCCCCCCCCCCCCCATTGCACCCGC
GGGGGCCCGGGTTGCGCAAAACCCCCCCCCCTCCTGCCCCCCCCCGCGTC
CTGGTCTGTTTTCGCATTTTTCATTTTTGTTGGTCAGGACCCCCTGTACG
TGGTGTCGGATTTGCTCGGGGTTGCGATTAGCAAGGAGAAGTTCAAGAGG
GCCGCCAGGCTGAGGGATGCCAAGGACTGGATACTCAGAGAAAGGTGTGT
GTGTCTGTGTGTCTGTGTGTGTGTCTGTGTGTCTGTATGTCTGTGTGTCT
GTATGTCTGTGTGTCTGTGTGTGTCTGCGTGCGTGTGTGTGTGTCTGCGT
GCGTGCTTGTACTTGAGCTTGGGTGCGTGGGTGCGTGGGAGTGGGGGTGG
GGGTGGGTGCGTGGGTGGGGGCTTGTTCGTACCTCTTGCGACAGGACCGT
GGAGCTTGTCCTTCAGCTGTCGACAACCCTGACCCTAACCCAAACAGAGG
GTCCAGCCTGCAACCCCCCGGGCTTGCGGCGTGGAGCACGTGCGGCGCGG
AGCGCTCCACCGCCGTGATGGTCCGTTCGGGCTGGCACGCCCCGGTGCGT
TTTCGCACGACTCGAGAGCAAAGAAAAAAACGACGCCTGATGAAGGGTCT
GCAGGAGCACACCACGGCGCGGGCTGGTTGGACCCAGGCGTATTTCGTCA
AAGACAAGAGAGTCACCAACACCGAAGGAGTGCCGTGCGCTGAGACAAAA
TGATAGCGACCCAGGGGGGTTGCGTTGACTTCCTTACACGTGTTTGCTCC
CGTCTGCGGGCCCCCTTCTTCGCCCCCACGTACATGCACGACTTGTTCGC
AGTCCAATCCTCGCTCCGTCGCTCCCTGTTTAGTCTCTTTGCGCCCTCGG
CCTCTTCTCGAACGCACCCGTTTGTTCTCCACCTCTCGCCCTCCTCGATC
GTCGCGCTTGACGCGCATACCCTCCTATCGAAACGTCGATCCATCCCTGG
CGGTGTGGGAGGGTCTCGTTCCACGTACGGTGTTCCCTTCTGCTCGTGGG
TCTCTGATCTGCTTGGACTTGTCTTTTCTTTTTTTTCCGCGCATGTTGTG
CATTGTTTGGGTGTGGGCAAAGCCGGGGGAGCGTTTTCGAGGTGGACCGA
CTCGTGTGCCTCGGTAACAAGGCGTCCAACATCATCACCACCGACCCGGA
GGGTGCTACCGTGCGCCGCTTCCTCCGAAAAGACCAGGTGCGTTGTTGTT
ATTGGTGGTGGTGGTGGTGGTGGTGGTGGCGGTGGGGGTGGGGGTGGTGG
CGGTAGTGTTGCTGCTGCTGCTGGTGGTGTGAGAGGATGTGGAGGTGTTG
AAATTGCAGTGCTGCTACTGCTGCTGCGTTTGGTGCTGCTATTGCTGCTG
CTGCTGCTGCTGCTTCTGTCTTCTTCAAGCCACTGCTATCGTCCTGGCTA
TGAAGCAAACGAGCTGGTGGGGTTTCAGAACTTCTGAGGGACTGCCTCAG
GTTCTGCGAGACAAACCTGTCTGCGATACGAACTTGTCCTGTGGTCTTCA
AGGCGAGACGCAGCACGCCGAGAACGCCGGCGAGCGATCCCCAAACCTCG
GAAAATCCCTCACGAAGACGAGGAGCTCTCATTCCGACCGACAACAAGCA
ATCAAGCAATCCGAGTACTGTACCAAGATTTCGTGCCCCCCCCCCCCCCC
CGCCCCCGTTCCGCCGACGCCAGGTGCAAGAGATCACGAGAACGGGGCAG
ATTCAGCTTCCGGTGTGGTCGCCGGACGGGAAGATGGTGGCGTTCAGCGT
CCTCAAGGCGGGGAGCGGGGGAGCGCCGATCGAGTCCGCCAGGATCCTGG
TCTACCGGGAGAGCGGCAGCCTCGTGGTAAGACCGCTCTTCCGCTGCCCG
CTTTCCTGA
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig10051:46..4604+

>mRNA_H-canaliculatus_F_contig10051.86.1 ID=mRNA_H-canaliculatus_F_contig10051.86.1|Name=mRNA_H-canaliculatus_F_contig10051.86.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=1350bp|location=Sequence derived from alignment at H-canaliculatus_F_contig10051:46..4604+ (Hapterophycus canaliculatus Oshoro5f female)
GGGGGGGGGGGGGGGGGGGGGGGGGCGGGGGCCGGGGGAGGCACGAGAGC
ACGAAGGGAGGCGACGCTGACGGAGCGGGAGGGCTTCGCGGTGGCGAAGA
AGGTGTTGCCGGAGGGAGGGGAGGGGCTGGAGATGGACCTGGAGGCGCTG
AGGGCGATGCGCTCCGAAGTTAACAAGGGGGGGGGGGGGGGGGGGGGGGG
GGCGGGGGCCGGGGGAGGCACGAGAGCACGAAGGGAGGCGACGCTGACGG
AGCGGGAGGGCTTCGCGGTGGCGAAGAAGGTGTTGCCGGAGGGAGGGGAG
GGGCTGGAGATGGACCTGGAGGCGCTGAGGGCGATGCGCTCCGAAGTTAA
CAAGCTCAAGCGCAGCATGCGTCGGGCGGTTGAAGAGGAGGACTACAAGA
CCGCTGGAGAACTGAGGAACCAAATGTCGGCGATAAGGGCGAAGCTCAAG
CGCAGCATGCGTCGGGCGGTTGAAGAGGAGGACTACAAGACCGCTGGAGA
ACTGAGGAACCAAATGTCGGCGATAAGGGCGAAGGACCCCCTGTACGTGG
TGTCGGATTTGCTCGGGGTTGCGATTAGCAAGGAGAAGTTCAAGAGGGCC
GCCAGGCTGAGGGATGCCAAGGACTGGATACTCAGAGAAAGGACCCCCTG
TACGTGGTGTCGGATTTGCTCGGGGTTGCGATTAGCAAGGAGAAGTTCAA
GAGGGCCGCCAGGCTGAGGGATGCCAAGGACTGGATACTCAGAGAAAGCC
GGGGGAGCGTTTTCGAGGTGGACCGACTCGTGTGCCTCGGTAACAAGGCG
TCCAACATCATCACCACCGACCCGGAGGGTGCTACCGTGCGCCGCTTCCT
CCGAAAAGACCAGCCGGGGGAGCGTTTTCGAGGTGGACCGACTCGTGTGC
CTCGGTAACAAGGCGTCCAACATCATCACCACCGACCCGGAGGGTGCTAC
CGTGCGCCGCTTCCTCCGAAAAGACCAGGTGCAAGAGATCACGAGAACGG
GGCAGATTCAGCTTCCGGTGTGGTCGCCGGACGGGAAGATGGTGGCGTTC
AGCGTCCTCAAGGCGGGGAGCGGGGGAGCGCCGATCGAGTCCGCCAGGAT
CCTGGTCTACCGGGAGAGCGGCAGCCTCGTGGTAAGACCGCTCTTCCGCT
GCCCGCTTTCCTGAGTGCAAGAGATCACGAGAACGGGGCAGATTCAGCTT
CCGGTGTGGTCGCCGGACGGGAAGATGGTGGCGTTCAGCGTCCTCAAGGC
GGGGAGCGGGGGAGCGCCGATCGAGTCCGCCAGGATCCTGGTCTACCGGG
AGAGCGGCAGCCTCGTGGTAAGACCGCTCTTCCGCTGCCCGCTTTCCTGA
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