|
|
Homology
BLAST of mRNA_H-canaliculatus_F_contig10050.85.1 vs. uniprot
Match: D7G0L3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G0L3_ECTSI) HSP 1 Score: 370 bits (949), Expect = 8.540e-122 Identity = 198/309 (64.08%), Postives = 226/309 (73.14%), Query Frame = 1
Query: 160 RGNSAG---NKALVKQVVETWVEESLDLRRFQGRRIHICEGETLPEVLSEFWSLASELAQEKYSAMANDRDSYAAHALFVVTRCDLLKDYKIMRHLDKVLDFCSGGCSDFGRTVTLQHYHPDFVLPPSRTRTAD-----DANSKGLARFINFSRSPYPMFGLTASAGSAVRSDPIEASDKTARLRSDLELVYNSVAGPSTDDCVDSHGSPHGTIPSSAEEVEDKTLDWLFGLPSSSSSSSSPAPGKKQATVFAEGKQGGAAQVGVSVGGGERGGHGAGCQANTVPGSSYLTSSYEGGLMTSNLNTPEKV 1062
RG + G L+KQ VE W +ESLDLRRFQG+R+HIC+ ETLPEVLSEFWSLAS +AQEKYSAMA DRD YAAHALFV RC LLKDY +MRHLDKVLDFCSGGCSDFGRTVTLQHYHPDFVLPPS+TR++ D N+KGL+RF+NFSR+PYP FGLTA+AGS VRS+PIE +DK LR DLELVYNSVAG STDDCVDSHGSPHGTIPSS EEV+DK LDWL+ LP + + A G + A + A + V+ LTSSYEGGL+TS LN+PEKV
Sbjct: 114 RGATGGFGRQNTLIKQAVEAWADESLDLRRFQGKRVHICKAETLPEVLSEFWSLASMMAQEKYSAMAGDRD-YAAHALFVAPRCALLKDYAMMRHLDKVLDFCSGGCSDFGRTVTLQHYHPDFVLPPSQTRSSSXXXXVDDNNKGLSRFVNFSRAPYPTFGLTAAAGSLVRSEPIEKTDKIGHLRLDLELVYNSVAGRSTDDCVDSHGSPHGTIPSSPEEVQDKALDWLYSLPPALQAGQEGAEGSVEERGAAGDEAVSTAAI-VNXXXXXXXXXXXXXXXXXXXXXXXLTSSYEGGLVTSGLNSPEKV 420
BLAST of mRNA_H-canaliculatus_F_contig10050.85.1 vs. uniprot
Match: A0A6H5JGJ1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JGJ1_9PHAE) HSP 1 Score: 332 bits (851), Expect = 3.860e-105 Identity = 192/349 (55.01%), Postives = 221/349 (63.32%), Query Frame = 1
Query: 157 PRGNSAGN----KALVKQVVETWVEESLDLRRFQGRRIHICEGETLPEVLSEFWSLASELAQEKYSAMANDRDSYAAHALFVVTRCDLLKDYKIMRHLD--------------------------------KVLDFCSGGCSDFGRTVTLQHYHPDFVLPPSRTRTAD-----DANSKGLARFINFSRSPYPMFGLTASAGSAVRSDPIEASDKTARLRSDLELVYNSVAGPSTDDCVDSHGSPHGTIPSSAEEVEDKTLDWLFGLPSSSSSSSSPAPGKKQATVFAEGKQGGAAQVGVSVGGGERGGHGAGCQANTVPGSSY------LTSSYEGGLMTSNLNTPEKV 1062
PR + G L+KQ VE W EESLDLRRFQG+R+HIC+ ETLPEVLSEFWSLA+ +AQEKYSAMA D D YAAHALFV RC LLK+Y +MRHLD KVLDFCSGGCSDFGRTVTLQHYHPDFVLPPS+TR++ D N+KGL+RF+NFSR+PYP FGLTA+AGS VRS+PIE +DK LR DLELVYNSVAG STDDCVDS G G IPSS EEV+DKTLDWL+ LP + + A G + ++G A VS LTSSYEGGL+TS LN+PEK+
Sbjct: 100 PRRGATGGFGRQNTLIKQAVEAWAEESLDLRRFQGKRVHICKAETLPEVLSEFWSLAAMMAQEKYSAMAGDHD-YAAHALFVAPRCALLKNYAMMRHLDPSLSEEIGTCFFIASSPEGLKAKTSRFVFARDKVLDFCSGGCSDFGRTVTLQHYHPDFVLPPSQTRSSSXXXXVDDNNKGLSRFVNFSRAPYPTFGLTAAAGSLVRSEPIEKTDKIGHLRLDLELVYNSVAGRSTDDCVDSGGGGRGGIPSSLEEVQDKTLDWLYSLPPALRAGQEGAVGGVE-------ERGAAGDEAVSTAXXXXXXXXXXXXXXXXXXXXXXXXXXXLTSSYEGGLVTSGLNSPEKL 440
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
| Hectar predicted targeting category | other localisation |
| Ec32 ortholog description | expressed unknown protein |
| Ec32 ortholog | Ec-06_007180.1 |
| Exons | 5 |
| Model size | 1062 |
| Cds size | 1062 |
| Stop | 0 |
| Start | 0 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
| 1622928633.411847-CDS-H-canaliculatus_F_contig10050:167..455 | 1622928633.411847-CDS-H-canaliculatus_F_contig10050:167..455 | Hapterophycus canaliculatus Oshoro5f female | CDS | H-canaliculatus_F_contig10050 168..455 - |
| 1696845504.8048372-CDS-H-canaliculatus_F_contig10050:167..455 | 1696845504.8048372-CDS-H-canaliculatus_F_contig10050:167..455 | Hapterophycus canaliculatus Oshoro5f female | CDS | H-canaliculatus_F_contig10050 168..455 - |
| 1622928633.4242783-CDS-H-canaliculatus_F_contig10050:725..917 | 1622928633.4242783-CDS-H-canaliculatus_F_contig10050:725..917 | Hapterophycus canaliculatus Oshoro5f female | CDS | H-canaliculatus_F_contig10050 726..917 - |
| 1696845504.8172202-CDS-H-canaliculatus_F_contig10050:725..917 | 1696845504.8172202-CDS-H-canaliculatus_F_contig10050:725..917 | Hapterophycus canaliculatus Oshoro5f female | CDS | H-canaliculatus_F_contig10050 726..917 - |
| 1622928633.435983-CDS-H-canaliculatus_F_contig10050:1317..1461 | 1622928633.435983-CDS-H-canaliculatus_F_contig10050:1317..1461 | Hapterophycus canaliculatus Oshoro5f female | CDS | H-canaliculatus_F_contig10050 1318..1461 - |
| 1696845504.8264532-CDS-H-canaliculatus_F_contig10050:1317..1461 | 1696845504.8264532-CDS-H-canaliculatus_F_contig10050:1317..1461 | Hapterophycus canaliculatus Oshoro5f female | CDS | H-canaliculatus_F_contig10050 1318..1461 - |
| 1622928633.4489803-CDS-H-canaliculatus_F_contig10050:2234..2417 | 1622928633.4489803-CDS-H-canaliculatus_F_contig10050:2234..2417 | Hapterophycus canaliculatus Oshoro5f female | CDS | H-canaliculatus_F_contig10050 2235..2417 - |
| 1696845504.8359015-CDS-H-canaliculatus_F_contig10050:2234..2417 | 1696845504.8359015-CDS-H-canaliculatus_F_contig10050:2234..2417 | Hapterophycus canaliculatus Oshoro5f female | CDS | H-canaliculatus_F_contig10050 2235..2417 - |
| 1622928633.4747798-CDS-H-canaliculatus_F_contig10050:3229..3484 | 1622928633.4747798-CDS-H-canaliculatus_F_contig10050:3229..3484 | Hapterophycus canaliculatus Oshoro5f female | CDS | H-canaliculatus_F_contig10050 3230..3484 - |
| 1696845504.8472667-CDS-H-canaliculatus_F_contig10050:3229..3484 | 1696845504.8472667-CDS-H-canaliculatus_F_contig10050:3229..3484 | Hapterophycus canaliculatus Oshoro5f female | CDS | H-canaliculatus_F_contig10050 3230..3484 - |
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-canaliculatus_F_contig10050.85.1 >prot_H-canaliculatus_F_contig10050.85.1 ID=prot_H-canaliculatus_F_contig10050.85.1|Name=mRNA_H-canaliculatus_F_contig10050.85.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=354bp
RNSCTSSGSSSSSSSRLYAKPADPPSSSAAPGKDKGKEGEEQKSSAKKRS RKPRGNSAGNKALVKQVVETWVEESLDLRRFQGRRIHICEGETLPEVLSE FWSLASELAQEKYSAMANDRDSYAAHALFVVTRCDLLKDYKIMRHLDKVL DFCSGGCSDFGRTVTLQHYHPDFVLPPSRTRTADDANSKGLARFINFSRS PYPMFGLTASAGSAVRSDPIEASDKTARLRSDLELVYNSVAGPSTDDCVD SHGSPHGTIPSSAEEVEDKTLDWLFGLPSSSSSSSSPAPGKKQATVFAEG KQGGAAQVGVSVGGGERGGHGAGCQANTVPGSSYLTSSYEGGLMTSNLNT PEKV back to topmRNA from alignment at H-canaliculatus_F_contig10050:168..3484- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_H-canaliculatus_F_contig10050.85.1 ID=mRNA_H-canaliculatus_F_contig10050.85.1|Name=mRNA_H-canaliculatus_F_contig10050.85.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=3317bp|location=Sequence derived from alignment at H-canaliculatus_F_contig10050:168..3484- (Hapterophycus canaliculatus Oshoro5f female) AGGAATAGCTGCACCAGCAGCGGCAGCAGCAGCAGCAGCAGCAGCAGGCT
CTACGCCAAGCCGGCTGACCCTCCCTCCTCGTCCGCGGCCCCCGGAAAGG
ACAAGGGGAAGGAGGGGGAGGAACAGAAGAGCAGCGCCAAGAAGCGTAGC
CGCAAACCTCGCGGCAACAGCGCCGGCAACAAGGCGCTGGTCAAGCAGGT
CGTTGAGACGTGGGTCGAGGAGTCCCTGGACCTGCGCCGCTTCCAGGGCA
GACGGGTAAGCGTTGAAAGGGTGCGTGCAGAGTAGGACTTTCGCAAATGA
CGAAAGAGTCAAGTCTCCGGGTTGGAGGCGCGCCGACCGCTTGATTTAGA
GGTCGCGTCCGCGATGCAGTCGACCCTGCATGCCCCCGCTTATTGAGGAC
GAAGGACCACGCTGCGGATAAACCTGGAGTCTTCTTTCTCACCGGCGACT
TCCACCCTAATGCTTCTTCCTTCGCGAATTGACGATGTACGCTTATGGCC
GAAGTCCTCAGGCCAGTCTGCCTGGCGTACTCTTCTCGCTCCGAGCGATG
CTCGTCCCATCTACCGCAGTTGGTGAAGAATTAACCCCCCCCCCTCCCCC
GTGGTTGTGCAAAAGCCGGGGTTCTGAACGAGAACATGACGGACCAATCT
CAAGCCATGGCCCAGGCGCTGCACAGGAAGCAACCGGAAGGGAGCCTGTC
CCATGGATCATTTTGACGCTGGTGTCAATCCATCGACCATCTTGACTGTC
TAATGCAATCGCACGATGCGATGCGATGCGCTGGTAACTCCCCTCGCTTT
CAAACATCTGGTACTCAGGGCCACGGAATAAGACGCTAATATTGACGCCG
CGGTAGGCAAGTTGTGGCCCTCACACCACCTACCCACATTTTTAAGCCCG
ATCTCCTCCTGCGCTGCACTCCCATGCACCAAATTCACATGAAGCGGACG
CGCACCACCCATGCTGTCGACGTGATGACCACCCCTTGCAAGTTCACGTG
CGATCAAGCCCCCGCTCTGCCTCCCGCCTCGATCCAATATTCTGTCGCCA
AAACCACAAACAACAAGATTCATATATGCGAGGGAGAGACCTTGCCGGAA
GTGTTGTCGGAGTTTTGGAGCCTCGCGTCGGAGCTGGCGCAGGAGAAGTA
CTCGGCCATGGCGAACGACCGCGACTCGTACGCCGCACACGCCCTCTTCG
TCGTCACCCGTTGCGACCTGCTCAAGGACTACAAGATAATGCGGCACCTG
GTGGGTAGTTTCTTCGGTCTCCAAACTTGCGACAAAAGAGAGGCAGTAGA
GAAAGACCGAGGGGAAGAAACAGAGACATCAGCGAGAACAAAACATCTAC
GCGTATCAAAGGGCATATGTGACTCAAGTAAGAGATGGGGCGGTGGGGGG
CAGGGGCAGGGGCAGGGGCAAAAAATACCGTCGCGTTATCCAGTGCTGCG
GAAATAGCGAGGCGGGTTTGCTGCTGCATTTTGCGGCCTCTCTCTTGAGT
GCCGCAGCGTCAGCAGGCGACTCGCCTCTCCCAAGTGCGTGACGCGGTTG
AAGGAAAGCAGGCAAGGGGGGGAGGGGAGCCCGCCGGAGAGATAAGAGTT
TACGGGGCCTGGGGGATACGAACAAGTGTTGGTCCTGGCGAGACTTTTGT
TAGACTTGATCCTTTCCCCCACCTGTTGCCTCGCTTGCCCCTCCCTGGTG
AAATTGCTTAACGGGTAAAGCACCAAAACTTCTCCCCGCTTACGCTTGTG
ACTCCCCGCTGGTGTCGTCGCTACCCTCGTCCTTCCTCCTACAAGGAGCT
CGAGACTCCTTTTTTTGTTTTGTTCCCTTCCTCTGTCGTCGCCCCCCTCC
CCCCCCCCCCTCATGTCTTCATCCCCTTATCTATTTCTTCCACGCCGACC
TTTCTTTTTCTTCCCACTGAGCCCCCCCCCGTCCCTCCCAATCGTCCCAC
TCGCATCTTCCTCCGCCCCCCCCTCCCTTCTCCCTCCCTCTCACCGGCAC
GCGGATGATGCTCGCGCTTTCAGGATAAGGTGCTCGACTTCTGTTCCGGC
GGTTGCAGCGATTTCGGGCGGACGGTGACCCTCCAGCACTACCACCCGGA
CTTCGTGCTCCCGCCCTCCCGCACCCGCACCGCCGACGACGCCAACAGCA
AGGGCCTCGCCCGCTTCGTGAGTGTTGACGGAGCGCCGAGCCTACCCTTC
CGCTGTTGACATCCTGCGCGTGTCGCGCGCGCCAGGCAAAACGATCGGCG
GGGCTGAGCTCAACCCGTGGTTGGCCGGAGGCTTACGTGCGGAAAGAAGG
AATAAACGAGAACGCTCCTGGACGCCGGGAGGCGCCCTCTCTTTCTACGT
CACGCCTCGCCGGCGAGATGCTTTTGTTCCCTGTGCCGCTCTTGTGGAAG
CGTGTGTTCGCAGACGTAGGCACATCGGAAAACGAGCCAAACGGTCGAGT
GTCCGCCCCTATGCCACAAGGCAGTGGTCTCTAGCTTTCCCATCGCACGT
CGGTCCCTCCTTTCCTGTCTGACCCCGCCCCCCGCCCCCCATCCCGCCTC
CGTGTGGTGAAATGCAGATAAACTTCTCCCGCTCGCCGTACCCGATGTTC
GGCTTGACGGCCTCGGCCGGAAGCGCCGTCCGCTCCGACCCCATCGAGGC
CTCCGACAAGACTGCCCGCCTCCGGTCGGACCTGGAGCTGGTGTACAACT
CTGTGGCTGGCCCAAGCACGGACGACTGCGTGGACTCGCACGGTTCGCCG
CATGGGACGGTGAGGGTTGGCTACGGGGGGGCAAGAGGGGGATACAGGAG
AGAGAGGGGTGGGAGAGTGGCTTGGGATGGGGAGAGTGTTGGGTATGAGA
TAAGAGGTGGGGGAGACGAAATCTGAGAGCAAGTGGCGACTCGCTGGGCA
CTAGAGGTTTCTGCAACCGGAAGGTTCGCCCGCCGATGCCTGGACACGTG
TCAACACGTTTGCCGCTTGTGTCGCTCAACGCCGACCGCCTATACCCACC
TGTCGAAACGAACCCGGTCTACGCCGCAGATCCCCTCCTCCGCCGAGGAG
GTGGAAGACAAGACGCTGGACTGGCTATTCGGCCTGCCATCGTCGTCGTC
GTCGTCGTCGTCGCCGGCCCCCGGCAAAAAACAGGCGACCGTTTTCGCCG
AAGGAAAGCAGGGAGGAGCAGCACAAGTAGGAGTCTCCGTTGGTGGCGGG
GAGCGGGGCGGACACGGCGCTGGGTGCCAAGCGAACACCGTGCCGGGGAG
CTCTTACTTGACCAGCTCGTACGAGGGAGGCCTGATGACGAGCAACCTCA
ACACGCCAGAAAAGGTG back to topCoding sequence (CDS) from alignment at H-canaliculatus_F_contig10050:168..3484- >mRNA_H-canaliculatus_F_contig10050.85.1 ID=mRNA_H-canaliculatus_F_contig10050.85.1|Name=mRNA_H-canaliculatus_F_contig10050.85.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=2124bp|location=Sequence derived from alignment at H-canaliculatus_F_contig10050:168..3484- (Hapterophycus canaliculatus Oshoro5f female) AGGAATAGCTGCACCAGCAGCGGCAGCAGCAGCAGCAGCAGCAGCAGGCT CTACGCCAAGCCGGCTGACCCTCCCTCCTCGTCCGCGGCCCCCGGAAAGG ACAAGGGGAAGGAGGGGGAGGAACAGAAGAGCAGCGCCAAGAAGCGTAGC CGCAAACCTCGCGGCAACAGCGCCGGCAACAAGGCGCTGGTCAAGCAGGT CGTTGAGACGTGGGTCGAGGAGTCCCTGGACCTGCGCCGCTTCCAGGGCA GACGGAGGAATAGCTGCACCAGCAGCGGCAGCAGCAGCAGCAGCAGCAGC AGGCTCTACGCCAAGCCGGCTGACCCTCCCTCCTCGTCCGCGGCCCCCGG AAAGGACAAGGGGAAGGAGGGGGAGGAACAGAAGAGCAGCGCCAAGAAGC GTAGCCGCAAACCTCGCGGCAACAGCGCCGGCAACAAGGCGCTGGTCAAG CAGGTCGTTGAGACGTGGGTCGAGGAGTCCCTGGACCTGCGCCGCTTCCA GGGCAGACGGATTCATATATGCGAGGGAGAGACCTTGCCGGAAGTGTTGT CGGAGTTTTGGAGCCTCGCGTCGGAGCTGGCGCAGGAGAAGTACTCGGCC ATGGCGAACGACCGCGACTCGTACGCCGCACACGCCCTCTTCGTCGTCAC CCGTTGCGACCTGCTCAAGGACTACAAGATAATGCGGCACCTGATTCATA TATGCGAGGGAGAGACCTTGCCGGAAGTGTTGTCGGAGTTTTGGAGCCTC GCGTCGGAGCTGGCGCAGGAGAAGTACTCGGCCATGGCGAACGACCGCGA CTCGTACGCCGCACACGCCCTCTTCGTCGTCACCCGTTGCGACCTGCTCA AGGACTACAAGATAATGCGGCACCTGGATAAGGTGCTCGACTTCTGTTCC GGCGGTTGCAGCGATTTCGGGCGGACGGTGACCCTCCAGCACTACCACCC GGACTTCGTGCTCCCGCCCTCCCGCACCCGCACCGCCGACGACGCCAACA GCAAGGGCCTCGCCCGCTTCGATAAGGTGCTCGACTTCTGTTCCGGCGGT TGCAGCGATTTCGGGCGGACGGTGACCCTCCAGCACTACCACCCGGACTT CGTGCTCCCGCCCTCCCGCACCCGCACCGCCGACGACGCCAACAGCAAGG GCCTCGCCCGCTTCATAAACTTCTCCCGCTCGCCGTACCCGATGTTCGGC TTGACGGCCTCGGCCGGAAGCGCCGTCCGCTCCGACCCCATCGAGGCCTC CGACAAGACTGCCCGCCTCCGGTCGGACCTGGAGCTGGTGTACAACTCTG TGGCTGGCCCAAGCACGGACGACTGCGTGGACTCGCACGGTTCGCCGCAT GGGACGATAAACTTCTCCCGCTCGCCGTACCCGATGTTCGGCTTGACGGC CTCGGCCGGAAGCGCCGTCCGCTCCGACCCCATCGAGGCCTCCGACAAGA CTGCCCGCCTCCGGTCGGACCTGGAGCTGGTGTACAACTCTGTGGCTGGC CCAAGCACGGACGACTGCGTGGACTCGCACGGTTCGCCGCATGGGACGAT CCCCTCCTCCGCCGAGGAGGTGGAAGACAAGACGCTGGACTGGCTATTCG GCCTGCCATCGTCGTCGTCGTCGTCGTCGTCGCCGGCCCCCGGCAAAAAA CAGGCGACCGTTTTCGCCGAAGGAAAGCAGGGAGGAGCAGCACAAGTAGG AGTCTCCGTTGGTGGCGGGGAGCGGGGCGGACACGGCGCTGGGTGCCAAG CGAACACCGTGCCGGGGAGCTCTTACTTGACCAGCTCGTACGAGGGAGGC CTGATGACGAGCAACCTCAACACGCCAGAAAAGGTGATCCCCTCCTCCGC CGAGGAGGTGGAAGACAAGACGCTGGACTGGCTATTCGGCCTGCCATCGT CGTCGTCGTCGTCGTCGTCGCCGGCCCCCGGCAAAAAACAGGCGACCGTT TTCGCCGAAGGAAAGCAGGGAGGAGCAGCACAAGTAGGAGTCTCCGTTGG TGGCGGGGAGCGGGGCGGACACGGCGCTGGGTGCCAAGCGAACACCGTGC CGGGGAGCTCTTACTTGACCAGCTCGTACGAGGGAGGCCTGATGACGAGC AACCTCAACACGCCAGAAAAGGTG back to top
|