mRNA_H-canaliculatus_F_contig10050.85.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig10050.85.1
Unique NamemRNA_H-canaliculatus_F_contig10050.85.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
BLAST of mRNA_H-canaliculatus_F_contig10050.85.1 vs. uniprot
Match: D7G0L3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G0L3_ECTSI)

HSP 1 Score: 370 bits (949), Expect = 8.540e-122
Identity = 198/309 (64.08%), Postives = 226/309 (73.14%), Query Frame = 1
Query:  160 RGNSAG---NKALVKQVVETWVEESLDLRRFQGRRIHICEGETLPEVLSEFWSLASELAQEKYSAMANDRDSYAAHALFVVTRCDLLKDYKIMRHLDKVLDFCSGGCSDFGRTVTLQHYHPDFVLPPSRTRTAD-----DANSKGLARFINFSRSPYPMFGLTASAGSAVRSDPIEASDKTARLRSDLELVYNSVAGPSTDDCVDSHGSPHGTIPSSAEEVEDKTLDWLFGLPSSSSSSSSPAPGKKQATVFAEGKQGGAAQVGVSVGGGERGGHGAGCQANTVPGSSYLTSSYEGGLMTSNLNTPEKV 1062
            RG + G      L+KQ VE W +ESLDLRRFQG+R+HIC+ ETLPEVLSEFWSLAS +AQEKYSAMA DRD YAAHALFV  RC LLKDY +MRHLDKVLDFCSGGCSDFGRTVTLQHYHPDFVLPPS+TR++      D N+KGL+RF+NFSR+PYP FGLTA+AGS VRS+PIE +DK   LR DLELVYNSVAG STDDCVDSHGSPHGTIPSS EEV+DK LDWL+ LP +  +    A G  +    A  +    A + V+                       LTSSYEGGL+TS LN+PEKV
Sbjct:  114 RGATGGFGRQNTLIKQAVEAWADESLDLRRFQGKRVHICKAETLPEVLSEFWSLASMMAQEKYSAMAGDRD-YAAHALFVAPRCALLKDYAMMRHLDKVLDFCSGGCSDFGRTVTLQHYHPDFVLPPSQTRSSSXXXXVDDNNKGLSRFVNFSRAPYPTFGLTAAAGSLVRSEPIEKTDKIGHLRLDLELVYNSVAGRSTDDCVDSHGSPHGTIPSSPEEVQDKALDWLYSLPPALQAGQEGAEGSVEERGAAGDEAVSTAAI-VNXXXXXXXXXXXXXXXXXXXXXXXLTSSYEGGLVTSGLNSPEKV 420          
BLAST of mRNA_H-canaliculatus_F_contig10050.85.1 vs. uniprot
Match: A0A6H5JGJ1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JGJ1_9PHAE)

HSP 1 Score: 332 bits (851), Expect = 3.860e-105
Identity = 192/349 (55.01%), Postives = 221/349 (63.32%), Query Frame = 1
Query:  157 PRGNSAGN----KALVKQVVETWVEESLDLRRFQGRRIHICEGETLPEVLSEFWSLASELAQEKYSAMANDRDSYAAHALFVVTRCDLLKDYKIMRHLD--------------------------------KVLDFCSGGCSDFGRTVTLQHYHPDFVLPPSRTRTAD-----DANSKGLARFINFSRSPYPMFGLTASAGSAVRSDPIEASDKTARLRSDLELVYNSVAGPSTDDCVDSHGSPHGTIPSSAEEVEDKTLDWLFGLPSSSSSSSSPAPGKKQATVFAEGKQGGAAQVGVSVGGGERGGHGAGCQANTVPGSSY------LTSSYEGGLMTSNLNTPEKV 1062
            PR  + G       L+KQ VE W EESLDLRRFQG+R+HIC+ ETLPEVLSEFWSLA+ +AQEKYSAMA D D YAAHALFV  RC LLK+Y +MRHLD                                KVLDFCSGGCSDFGRTVTLQHYHPDFVLPPS+TR++      D N+KGL+RF+NFSR+PYP FGLTA+AGS VRS+PIE +DK   LR DLELVYNSVAG STDDCVDS G   G IPSS EEV+DKTLDWL+ LP +  +    A G  +       ++G A    VS                             LTSSYEGGL+TS LN+PEK+
Sbjct:  100 PRRGATGGFGRQNTLIKQAVEAWAEESLDLRRFQGKRVHICKAETLPEVLSEFWSLAAMMAQEKYSAMAGDHD-YAAHALFVAPRCALLKNYAMMRHLDPSLSEEIGTCFFIASSPEGLKAKTSRFVFARDKVLDFCSGGCSDFGRTVTLQHYHPDFVLPPSQTRSSSXXXXVDDNNKGLSRFVNFSRAPYPTFGLTAAAGSLVRSEPIEKTDKIGHLRLDLELVYNSVAGRSTDDCVDSGGGGRGGIPSSLEEVQDKTLDWLYSLPPALRAGQEGAVGGVE-------ERGAAGDEAVSTAXXXXXXXXXXXXXXXXXXXXXXXXXXXLTSSYEGGLVTSGLNSPEKL 440          
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig10050.85.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7G0L3_ECTSI8.540e-12264.08Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JGJ1_9PHAE3.860e-10555.01Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig10050contigH-canaliculatus_F_contig10050:168..3484 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-06_007180.1
Exons5
Model size1062
Cds size1062
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig10050.85.1prot_H-canaliculatus_F_contig10050.85.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig10050 168..3484 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928633.411847-CDS-H-canaliculatus_F_contig10050:167..4551622928633.411847-CDS-H-canaliculatus_F_contig10050:167..455Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10050 168..455 -
1696845504.8048372-CDS-H-canaliculatus_F_contig10050:167..4551696845504.8048372-CDS-H-canaliculatus_F_contig10050:167..455Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10050 168..455 -
1622928633.4242783-CDS-H-canaliculatus_F_contig10050:725..9171622928633.4242783-CDS-H-canaliculatus_F_contig10050:725..917Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10050 726..917 -
1696845504.8172202-CDS-H-canaliculatus_F_contig10050:725..9171696845504.8172202-CDS-H-canaliculatus_F_contig10050:725..917Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10050 726..917 -
1622928633.435983-CDS-H-canaliculatus_F_contig10050:1317..14611622928633.435983-CDS-H-canaliculatus_F_contig10050:1317..1461Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10050 1318..1461 -
1696845504.8264532-CDS-H-canaliculatus_F_contig10050:1317..14611696845504.8264532-CDS-H-canaliculatus_F_contig10050:1317..1461Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10050 1318..1461 -
1622928633.4489803-CDS-H-canaliculatus_F_contig10050:2234..24171622928633.4489803-CDS-H-canaliculatus_F_contig10050:2234..2417Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10050 2235..2417 -
1696845504.8359015-CDS-H-canaliculatus_F_contig10050:2234..24171696845504.8359015-CDS-H-canaliculatus_F_contig10050:2234..2417Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10050 2235..2417 -
1622928633.4747798-CDS-H-canaliculatus_F_contig10050:3229..34841622928633.4747798-CDS-H-canaliculatus_F_contig10050:3229..3484Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10050 3230..3484 -
1696845504.8472667-CDS-H-canaliculatus_F_contig10050:3229..34841696845504.8472667-CDS-H-canaliculatus_F_contig10050:3229..3484Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10050 3230..3484 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig10050.85.1

>prot_H-canaliculatus_F_contig10050.85.1 ID=prot_H-canaliculatus_F_contig10050.85.1|Name=mRNA_H-canaliculatus_F_contig10050.85.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=354bp
RNSCTSSGSSSSSSSRLYAKPADPPSSSAAPGKDKGKEGEEQKSSAKKRS
RKPRGNSAGNKALVKQVVETWVEESLDLRRFQGRRIHICEGETLPEVLSE
FWSLASELAQEKYSAMANDRDSYAAHALFVVTRCDLLKDYKIMRHLDKVL
DFCSGGCSDFGRTVTLQHYHPDFVLPPSRTRTADDANSKGLARFINFSRS
PYPMFGLTASAGSAVRSDPIEASDKTARLRSDLELVYNSVAGPSTDDCVD
SHGSPHGTIPSSAEEVEDKTLDWLFGLPSSSSSSSSPAPGKKQATVFAEG
KQGGAAQVGVSVGGGERGGHGAGCQANTVPGSSYLTSSYEGGLMTSNLNT
PEKV
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mRNA from alignment at H-canaliculatus_F_contig10050:168..3484-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig10050.85.1 ID=mRNA_H-canaliculatus_F_contig10050.85.1|Name=mRNA_H-canaliculatus_F_contig10050.85.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=3317bp|location=Sequence derived from alignment at H-canaliculatus_F_contig10050:168..3484- (Hapterophycus canaliculatus Oshoro5f female)
AGGAATAGCTGCACCAGCAGCGGCAGCAGCAGCAGCAGCAGCAGCAGGCT CTACGCCAAGCCGGCTGACCCTCCCTCCTCGTCCGCGGCCCCCGGAAAGG ACAAGGGGAAGGAGGGGGAGGAACAGAAGAGCAGCGCCAAGAAGCGTAGC CGCAAACCTCGCGGCAACAGCGCCGGCAACAAGGCGCTGGTCAAGCAGGT CGTTGAGACGTGGGTCGAGGAGTCCCTGGACCTGCGCCGCTTCCAGGGCA GACGGGTAAGCGTTGAAAGGGTGCGTGCAGAGTAGGACTTTCGCAAATGA CGAAAGAGTCAAGTCTCCGGGTTGGAGGCGCGCCGACCGCTTGATTTAGA GGTCGCGTCCGCGATGCAGTCGACCCTGCATGCCCCCGCTTATTGAGGAC GAAGGACCACGCTGCGGATAAACCTGGAGTCTTCTTTCTCACCGGCGACT TCCACCCTAATGCTTCTTCCTTCGCGAATTGACGATGTACGCTTATGGCC GAAGTCCTCAGGCCAGTCTGCCTGGCGTACTCTTCTCGCTCCGAGCGATG CTCGTCCCATCTACCGCAGTTGGTGAAGAATTAACCCCCCCCCCTCCCCC GTGGTTGTGCAAAAGCCGGGGTTCTGAACGAGAACATGACGGACCAATCT CAAGCCATGGCCCAGGCGCTGCACAGGAAGCAACCGGAAGGGAGCCTGTC CCATGGATCATTTTGACGCTGGTGTCAATCCATCGACCATCTTGACTGTC TAATGCAATCGCACGATGCGATGCGATGCGCTGGTAACTCCCCTCGCTTT CAAACATCTGGTACTCAGGGCCACGGAATAAGACGCTAATATTGACGCCG CGGTAGGCAAGTTGTGGCCCTCACACCACCTACCCACATTTTTAAGCCCG ATCTCCTCCTGCGCTGCACTCCCATGCACCAAATTCACATGAAGCGGACG CGCACCACCCATGCTGTCGACGTGATGACCACCCCTTGCAAGTTCACGTG CGATCAAGCCCCCGCTCTGCCTCCCGCCTCGATCCAATATTCTGTCGCCA AAACCACAAACAACAAGATTCATATATGCGAGGGAGAGACCTTGCCGGAA GTGTTGTCGGAGTTTTGGAGCCTCGCGTCGGAGCTGGCGCAGGAGAAGTA CTCGGCCATGGCGAACGACCGCGACTCGTACGCCGCACACGCCCTCTTCG TCGTCACCCGTTGCGACCTGCTCAAGGACTACAAGATAATGCGGCACCTG GTGGGTAGTTTCTTCGGTCTCCAAACTTGCGACAAAAGAGAGGCAGTAGA GAAAGACCGAGGGGAAGAAACAGAGACATCAGCGAGAACAAAACATCTAC GCGTATCAAAGGGCATATGTGACTCAAGTAAGAGATGGGGCGGTGGGGGG CAGGGGCAGGGGCAGGGGCAAAAAATACCGTCGCGTTATCCAGTGCTGCG GAAATAGCGAGGCGGGTTTGCTGCTGCATTTTGCGGCCTCTCTCTTGAGT GCCGCAGCGTCAGCAGGCGACTCGCCTCTCCCAAGTGCGTGACGCGGTTG AAGGAAAGCAGGCAAGGGGGGGAGGGGAGCCCGCCGGAGAGATAAGAGTT TACGGGGCCTGGGGGATACGAACAAGTGTTGGTCCTGGCGAGACTTTTGT TAGACTTGATCCTTTCCCCCACCTGTTGCCTCGCTTGCCCCTCCCTGGTG AAATTGCTTAACGGGTAAAGCACCAAAACTTCTCCCCGCTTACGCTTGTG ACTCCCCGCTGGTGTCGTCGCTACCCTCGTCCTTCCTCCTACAAGGAGCT CGAGACTCCTTTTTTTGTTTTGTTCCCTTCCTCTGTCGTCGCCCCCCTCC CCCCCCCCCCTCATGTCTTCATCCCCTTATCTATTTCTTCCACGCCGACC TTTCTTTTTCTTCCCACTGAGCCCCCCCCCGTCCCTCCCAATCGTCCCAC TCGCATCTTCCTCCGCCCCCCCCTCCCTTCTCCCTCCCTCTCACCGGCAC GCGGATGATGCTCGCGCTTTCAGGATAAGGTGCTCGACTTCTGTTCCGGC GGTTGCAGCGATTTCGGGCGGACGGTGACCCTCCAGCACTACCACCCGGA CTTCGTGCTCCCGCCCTCCCGCACCCGCACCGCCGACGACGCCAACAGCA AGGGCCTCGCCCGCTTCGTGAGTGTTGACGGAGCGCCGAGCCTACCCTTC CGCTGTTGACATCCTGCGCGTGTCGCGCGCGCCAGGCAAAACGATCGGCG GGGCTGAGCTCAACCCGTGGTTGGCCGGAGGCTTACGTGCGGAAAGAAGG AATAAACGAGAACGCTCCTGGACGCCGGGAGGCGCCCTCTCTTTCTACGT CACGCCTCGCCGGCGAGATGCTTTTGTTCCCTGTGCCGCTCTTGTGGAAG CGTGTGTTCGCAGACGTAGGCACATCGGAAAACGAGCCAAACGGTCGAGT GTCCGCCCCTATGCCACAAGGCAGTGGTCTCTAGCTTTCCCATCGCACGT CGGTCCCTCCTTTCCTGTCTGACCCCGCCCCCCGCCCCCCATCCCGCCTC CGTGTGGTGAAATGCAGATAAACTTCTCCCGCTCGCCGTACCCGATGTTC GGCTTGACGGCCTCGGCCGGAAGCGCCGTCCGCTCCGACCCCATCGAGGC CTCCGACAAGACTGCCCGCCTCCGGTCGGACCTGGAGCTGGTGTACAACT CTGTGGCTGGCCCAAGCACGGACGACTGCGTGGACTCGCACGGTTCGCCG CATGGGACGGTGAGGGTTGGCTACGGGGGGGCAAGAGGGGGATACAGGAG AGAGAGGGGTGGGAGAGTGGCTTGGGATGGGGAGAGTGTTGGGTATGAGA TAAGAGGTGGGGGAGACGAAATCTGAGAGCAAGTGGCGACTCGCTGGGCA CTAGAGGTTTCTGCAACCGGAAGGTTCGCCCGCCGATGCCTGGACACGTG TCAACACGTTTGCCGCTTGTGTCGCTCAACGCCGACCGCCTATACCCACC TGTCGAAACGAACCCGGTCTACGCCGCAGATCCCCTCCTCCGCCGAGGAG GTGGAAGACAAGACGCTGGACTGGCTATTCGGCCTGCCATCGTCGTCGTC GTCGTCGTCGTCGCCGGCCCCCGGCAAAAAACAGGCGACCGTTTTCGCCG AAGGAAAGCAGGGAGGAGCAGCACAAGTAGGAGTCTCCGTTGGTGGCGGG GAGCGGGGCGGACACGGCGCTGGGTGCCAAGCGAACACCGTGCCGGGGAG CTCTTACTTGACCAGCTCGTACGAGGGAGGCCTGATGACGAGCAACCTCA ACACGCCAGAAAAGGTG
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig10050:168..3484-

>mRNA_H-canaliculatus_F_contig10050.85.1 ID=mRNA_H-canaliculatus_F_contig10050.85.1|Name=mRNA_H-canaliculatus_F_contig10050.85.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=2124bp|location=Sequence derived from alignment at H-canaliculatus_F_contig10050:168..3484- (Hapterophycus canaliculatus Oshoro5f female)
AGGAATAGCTGCACCAGCAGCGGCAGCAGCAGCAGCAGCAGCAGCAGGCT
CTACGCCAAGCCGGCTGACCCTCCCTCCTCGTCCGCGGCCCCCGGAAAGG
ACAAGGGGAAGGAGGGGGAGGAACAGAAGAGCAGCGCCAAGAAGCGTAGC
CGCAAACCTCGCGGCAACAGCGCCGGCAACAAGGCGCTGGTCAAGCAGGT
CGTTGAGACGTGGGTCGAGGAGTCCCTGGACCTGCGCCGCTTCCAGGGCA
GACGGAGGAATAGCTGCACCAGCAGCGGCAGCAGCAGCAGCAGCAGCAGC
AGGCTCTACGCCAAGCCGGCTGACCCTCCCTCCTCGTCCGCGGCCCCCGG
AAAGGACAAGGGGAAGGAGGGGGAGGAACAGAAGAGCAGCGCCAAGAAGC
GTAGCCGCAAACCTCGCGGCAACAGCGCCGGCAACAAGGCGCTGGTCAAG
CAGGTCGTTGAGACGTGGGTCGAGGAGTCCCTGGACCTGCGCCGCTTCCA
GGGCAGACGGATTCATATATGCGAGGGAGAGACCTTGCCGGAAGTGTTGT
CGGAGTTTTGGAGCCTCGCGTCGGAGCTGGCGCAGGAGAAGTACTCGGCC
ATGGCGAACGACCGCGACTCGTACGCCGCACACGCCCTCTTCGTCGTCAC
CCGTTGCGACCTGCTCAAGGACTACAAGATAATGCGGCACCTGATTCATA
TATGCGAGGGAGAGACCTTGCCGGAAGTGTTGTCGGAGTTTTGGAGCCTC
GCGTCGGAGCTGGCGCAGGAGAAGTACTCGGCCATGGCGAACGACCGCGA
CTCGTACGCCGCACACGCCCTCTTCGTCGTCACCCGTTGCGACCTGCTCA
AGGACTACAAGATAATGCGGCACCTGGATAAGGTGCTCGACTTCTGTTCC
GGCGGTTGCAGCGATTTCGGGCGGACGGTGACCCTCCAGCACTACCACCC
GGACTTCGTGCTCCCGCCCTCCCGCACCCGCACCGCCGACGACGCCAACA
GCAAGGGCCTCGCCCGCTTCGATAAGGTGCTCGACTTCTGTTCCGGCGGT
TGCAGCGATTTCGGGCGGACGGTGACCCTCCAGCACTACCACCCGGACTT
CGTGCTCCCGCCCTCCCGCACCCGCACCGCCGACGACGCCAACAGCAAGG
GCCTCGCCCGCTTCATAAACTTCTCCCGCTCGCCGTACCCGATGTTCGGC
TTGACGGCCTCGGCCGGAAGCGCCGTCCGCTCCGACCCCATCGAGGCCTC
CGACAAGACTGCCCGCCTCCGGTCGGACCTGGAGCTGGTGTACAACTCTG
TGGCTGGCCCAAGCACGGACGACTGCGTGGACTCGCACGGTTCGCCGCAT
GGGACGATAAACTTCTCCCGCTCGCCGTACCCGATGTTCGGCTTGACGGC
CTCGGCCGGAAGCGCCGTCCGCTCCGACCCCATCGAGGCCTCCGACAAGA
CTGCCCGCCTCCGGTCGGACCTGGAGCTGGTGTACAACTCTGTGGCTGGC
CCAAGCACGGACGACTGCGTGGACTCGCACGGTTCGCCGCATGGGACGAT
CCCCTCCTCCGCCGAGGAGGTGGAAGACAAGACGCTGGACTGGCTATTCG
GCCTGCCATCGTCGTCGTCGTCGTCGTCGTCGCCGGCCCCCGGCAAAAAA
CAGGCGACCGTTTTCGCCGAAGGAAAGCAGGGAGGAGCAGCACAAGTAGG
AGTCTCCGTTGGTGGCGGGGAGCGGGGCGGACACGGCGCTGGGTGCCAAG
CGAACACCGTGCCGGGGAGCTCTTACTTGACCAGCTCGTACGAGGGAGGC
CTGATGACGAGCAACCTCAACACGCCAGAAAAGGTGATCCCCTCCTCCGC
CGAGGAGGTGGAAGACAAGACGCTGGACTGGCTATTCGGCCTGCCATCGT
CGTCGTCGTCGTCGTCGTCGCCGGCCCCCGGCAAAAAACAGGCGACCGTT
TTCGCCGAAGGAAAGCAGGGAGGAGCAGCACAAGTAGGAGTCTCCGTTGG
TGGCGGGGAGCGGGGCGGACACGGCGCTGGGTGCCAAGCGAACACCGTGC
CGGGGAGCTCTTACTTGACCAGCTCGTACGAGGGAGGCCTGATGACGAGC
AACCTCAACACGCCAGAAAAGGTG
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