mRNA_H-canaliculatus_F_contig1005.83.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig1005.83.1
Unique NamemRNA_H-canaliculatus_F_contig1005.83.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
BLAST of mRNA_H-canaliculatus_F_contig1005.83.1 vs. uniprot
Match: D8LGS1_ECTSI (Beta-glucosidase, family GH1 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LGS1_ECTSI)

HSP 1 Score: 139 bits (349), Expect = 9.050e-37
Identity = 61/73 (83.56%), Postives = 66/73 (90.41%), Query Frame = 1
Query:    4 AQPLDPDSEEDKATAERFVVHQLAWWADPIYFGDYPQAMRDRIGERLPTFTEEESALLAGSNDFFGLNHYTSW 222
            A PLDPDS+ DKATAERFV  QLAWWADPIYFGDYPQ M+D +G+RLP FTEEESAL+AGSNDFFGLNHYTSW
Sbjct:  223 AVPLDPDSDADKATAERFVEFQLAWWADPIYFGDYPQVMKDLVGDRLPVFTEEESALIAGSNDFFGLNHYTSW 295          
BLAST of mRNA_H-canaliculatus_F_contig1005.83.1 vs. uniprot
Match: A0A6H5JDJ5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JDJ5_9PHAE)

HSP 1 Score: 137 bits (346), Expect = 2.760e-36
Identity = 60/73 (82.19%), Postives = 66/73 (90.41%), Query Frame = 1
Query:    4 AQPLDPDSEEDKATAERFVVHQLAWWADPIYFGDYPQAMRDRIGERLPTFTEEESALLAGSNDFFGLNHYTSW 222
            A PLDPDS+ DKATAERF+  QLAWWADPIYFGDYPQ M+D +G+RLP FTEEESAL+AGSNDFFGLNHYTSW
Sbjct:  248 AAPLDPDSDADKATAERFMEFQLAWWADPIYFGDYPQVMKDVVGDRLPVFTEEESALIAGSNDFFGLNHYTSW 320          
BLAST of mRNA_H-canaliculatus_F_contig1005.83.1 vs. uniprot
Match: A0A162IDG4_9PEZI (Beta-glucosidase n=1 Tax=Sporothrix insectorum RCEF 264 TaxID=1081102 RepID=A0A162IDG4_9PEZI)

HSP 1 Score: 102 bits (253), Expect = 1.020e-23
Identity = 43/73 (58.90%), Postives = 57/73 (78.08%), Query Frame = 1
Query:    1 AAQPLDPDSEEDKATAERFVVHQLAWWADPIYFGDYPQAMRDRIGERLPTFTEEESALLAGSNDFFGLNHYTS 219
            A  P DP+  ED A AER +   ++W+ADPIYFG YP +MR ++G+RLPTFT+EE AL+ GSNDF+G+NHYT+
Sbjct:  243 ATYPWDPEDPEDVAAAERKIEFAISWFADPIYFGHYPASMRAQLGDRLPTFTDEERALVQGSNDFYGMNHYTA 315          
BLAST of mRNA_H-canaliculatus_F_contig1005.83.1 vs. uniprot
Match: B5JPZ5_9BACT (Beta-glucosidase n=1 Tax=Verrucomicrobiae bacterium DG1235 TaxID=382464 RepID=B5JPZ5_9BACT)

HSP 1 Score: 102 bits (253), Expect = 1.040e-23
Identity = 44/66 (66.67%), Postives = 55/66 (83.33%), Query Frame = 1
Query:   22 DSEEDKATAERFVVHQLAWWADPIYFGDYPQAMRDRIGERLPTFTEEESALLAGSNDFFGLNHYTS 219
            DS EDKA AER +   L W+ADP+YFGDYP +MRDR+G+RLP F+E++ ALL GS+DFFGLNHYT+
Sbjct:  233 DSAEDKAAAERALEFFLGWFADPVYFGDYPASMRDRVGDRLPQFSEKDRALLKGSSDFFGLNHYTT 298          
BLAST of mRNA_H-canaliculatus_F_contig1005.83.1 vs. uniprot
Match: A0A1Z5KBD0_FISSO (Beta-glucosidase n=1 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5KBD0_FISSO)

HSP 1 Score: 102 bits (254), Expect = 1.070e-23
Identity = 44/66 (66.67%), Postives = 55/66 (83.33%), Query Frame = 1
Query:   22 DSEEDKATAERFVVHQLAWWADPIYFGDYPQAMRDRIGERLPTFTEEESALLAGSNDFFGLNHYTS 219
            DSEED+A A+R +   L W+ADPIYFGDYPQ+MRD++G RLP F+EE+ ALL GS+DFFGLNHY +
Sbjct:  418 DSEEDRAAAQRALEFSLGWFADPIYFGDYPQSMRDQLGPRLPEFSEEDRALLRGSSDFFGLNHYNT 483          
BLAST of mRNA_H-canaliculatus_F_contig1005.83.1 vs. uniprot
Match: T0PVD6_SAPDV (Uncharacterized protein n=1 Tax=Saprolegnia diclina (strain VS20) TaxID=1156394 RepID=T0PVD6_SAPDV)

HSP 1 Score: 95.9 bits (237), Expect = 1.940e-23
Identity = 41/56 (73.21%), Postives = 48/56 (85.71%), Query Frame = 1
Query:   46 AERFVVHQLAWWADPIYFGDYPQAMRDRIGERLPTFTEEESALLAGSNDFFGLNHY 213
            AER V+  L W+ADPIYFGDYP+AM+ R+G+RLP FT EESALL GSNDFFG+NHY
Sbjct:   51 AERAVLFDLGWFADPIYFGDYPEAMKARLGDRLPRFTPEESALLKGSNDFFGINHY 106          
BLAST of mRNA_H-canaliculatus_F_contig1005.83.1 vs. uniprot
Match: A0A3N4HH96_ASCIM (Family 1 glycosyl hydrolase n=1 Tax=Ascobolus immersus RN42 TaxID=1160509 RepID=A0A3N4HH96_ASCIM)

HSP 1 Score: 101 bits (251), Expect = 1.960e-23
Identity = 43/70 (61.43%), Postives = 54/70 (77.14%), Query Frame = 1
Query:   10 PLDPDSEEDKATAERFVVHQLAWWADPIYFGDYPQAMRDRIGERLPTFTEEESALLAGSNDFFGLNHYTS 219
            P DP+   D   AER +   +AW+ADPIYFGDYP +MR ++GERLPTFTEEE  L+ GSNDF+G+NHYT+
Sbjct:  249 PWDPEDPRDVEAAERKLEFSIAWFADPIYFGDYPASMRKQLGERLPTFTEEEVKLVKGSNDFYGMNHYTA 318          
BLAST of mRNA_H-canaliculatus_F_contig1005.83.1 vs. uniprot
Match: A0A1E5SNZ7_9BACT (Beta-glucosidase n=2 Tax=unclassified Roseivirga TaxID=2626142 RepID=A0A1E5SNZ7_9BACT)

HSP 1 Score: 100 bits (249), Expect = 3.260e-23
Identity = 43/66 (65.15%), Postives = 52/66 (78.79%), Query Frame = 1
Query:   22 DSEEDKATAERFVVHQLAWWADPIYFGDYPQAMRDRIGERLPTFTEEESALLAGSNDFFGLNHYTS 219
            D  EDK  AER +   L W+ADP+YFGDYPQ M+DR+G+RLP FT EES +L GS+DFFGLNHYT+
Sbjct:  232 DKPEDKEAAERALQFFLGWFADPVYFGDYPQVMKDRLGDRLPEFTSEESKMLKGSSDFFGLNHYTT 297          
BLAST of mRNA_H-canaliculatus_F_contig1005.83.1 vs. uniprot
Match: G0SHK8_CHATD (Beta-glucosidase-like protein n=1 Tax=Chaetomium thermophilum (strain DSM 1495 / CBS 144.50 / IMI 039719) TaxID=759272 RepID=G0SHK8_CHATD)

HSP 1 Score: 99.8 bits (247), Expect = 7.530e-23
Identity = 42/73 (57.53%), Postives = 55/73 (75.34%), Query Frame = 1
Query:    1 AAQPLDPDSEEDKATAERFVVHQLAWWADPIYFGDYPQAMRDRIGERLPTFTEEESALLAGSNDFFGLNHYTS 219
            A  P DP+   D    +R +   ++W+ADPIYFGDYP +MR ++GERLPTFTEEE AL+ GSNDF+G+NHYT+
Sbjct:  238 ATYPWDPEDPADIEACDRKIEFAISWFADPIYFGDYPASMRKQLGERLPTFTEEEVALVKGSNDFYGMNHYTA 310          
BLAST of mRNA_H-canaliculatus_F_contig1005.83.1 vs. uniprot
Match: UPI0014389B7E (GH1 family beta-glucosidase n=1 Tax=Lewinella antarctica TaxID=442734 RepID=UPI0014389B7E)

HSP 1 Score: 99.4 bits (246), Expect = 8.630e-23
Identity = 42/66 (63.64%), Postives = 53/66 (80.30%), Query Frame = 1
Query:   22 DSEEDKATAERFVVHQLAWWADPIYFGDYPQAMRDRIGERLPTFTEEESALLAGSNDFFGLNHYTS 219
            DSE D+A A+R +   LAW+ADPIYFGDYP  MR+ +G+RLP FT+EE  +L GS+DFFGLNHYT+
Sbjct:  232 DSEADRAAAQRSLEFMLAWFADPIYFGDYPAVMREHLGDRLPKFTDEEKEMLKGSSDFFGLNHYTT 297          
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig1005.83.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LGS1_ECTSI9.050e-3783.56Beta-glucosidase, family GH1 n=1 Tax=Ectocarpus si... [more]
A0A6H5JDJ5_9PHAE2.760e-3682.19Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A162IDG4_9PEZI1.020e-2358.90Beta-glucosidase n=1 Tax=Sporothrix insectorum RCE... [more]
B5JPZ5_9BACT1.040e-2366.67Beta-glucosidase n=1 Tax=Verrucomicrobiae bacteriu... [more]
A0A1Z5KBD0_FISSO1.070e-2366.67Beta-glucosidase n=1 Tax=Fistulifera solaris TaxID... [more]
T0PVD6_SAPDV1.940e-2373.21Uncharacterized protein n=1 Tax=Saprolegnia diclin... [more]
A0A3N4HH96_ASCIM1.960e-2361.43Family 1 glycosyl hydrolase n=1 Tax=Ascobolus imme... [more]
A0A1E5SNZ7_9BACT3.260e-2365.15Beta-glucosidase n=2 Tax=unclassified Roseivirga T... [more]
G0SHK8_CHATD7.530e-2357.53Beta-glucosidase-like protein n=1 Tax=Chaetomium t... [more]
UPI0014389B7E8.630e-2363.64GH1 family beta-glucosidase n=1 Tax=Lewinella anta... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig1005contigH-canaliculatus_F_contig1005:280..504 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score138.3
Seed ortholog evalue1.5e-30
Seed eggNOG ortholog2880.D8LGS1
KEGG rclassRC00049,RC00059,RC00171,RC00262,RC00397,RC00451,RC00714,RC00746,RC01248
KEGG koko:K01188,ko:K06699
KEGG ReactionR00026,R02558,R02887,R02985,R03527,R04949,R04998,R10035,R10039,R10040
KEGG Pathwayko00460,ko00500,ko00940,ko01100,ko01110,ko03050,map00460,map00500,map00940,map01100,map01110,map03050
EggNOG free text desc.beta-glucosidase activity
EggNOG OGsCOG2723@1,KOG0626@2759
EC3.2.1.21
COG Functional cat.G
CAZyGH1
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko03051
Hectar predicted targeting categoryother localisation
Exons1
Model size225
Cds size225
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928633.133811-CDS-H-canaliculatus_F_contig1005:279..5041622928633.133811-CDS-H-canaliculatus_F_contig1005:279..504Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1005 280..504 +
1696845504.622646-CDS-H-canaliculatus_F_contig1005:279..5041696845504.622646-CDS-H-canaliculatus_F_contig1005:279..504Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1005 280..504 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig1005.83.1prot_H-canaliculatus_F_contig1005.83.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig1005 280..504 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig1005.83.1

>prot_H-canaliculatus_F_contig1005.83.1 ID=prot_H-canaliculatus_F_contig1005.83.1|Name=mRNA_H-canaliculatus_F_contig1005.83.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=75bp
AAQPLDPDSEEDKATAERFVVHQLAWWADPIYFGDYPQAMRDRIGERLPT
FTEEESALLAGSNDFFGLNHYTSW*
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mRNA from alignment at H-canaliculatus_F_contig1005:280..504+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig1005.83.1 ID=mRNA_H-canaliculatus_F_contig1005.83.1|Name=mRNA_H-canaliculatus_F_contig1005.83.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=225bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1005:280..504+ (Hapterophycus canaliculatus Oshoro5f female)
GCCGCGCAGCCGCTAGATCCCGACTCTGAGGAAGACAAGGCGACGGCGGA GCGCTTCGTAGTGCACCAGCTGGCGTGGTGGGCCGACCCCATCTATTTCG GCGACTACCCCCAGGCGATGAGGGATAGGATCGGGGAGCGGCTGCCGACT TTCACGGAAGAGGAGAGCGCCCTCCTGGCGGGCAGCAACGACTTCTTCGG CCTGAACCACTACACGTCCTGGTGA
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig1005:280..504+

>mRNA_H-canaliculatus_F_contig1005.83.1 ID=mRNA_H-canaliculatus_F_contig1005.83.1|Name=mRNA_H-canaliculatus_F_contig1005.83.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=450bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1005:280..504+ (Hapterophycus canaliculatus Oshoro5f female)
GCCGCGCAGCCGCTAGATCCCGACTCTGAGGAAGACAAGGCGACGGCGGA
GCGCTTCGTAGTGCACCAGCTGGCGTGGTGGGCCGACCCCATCTATTTCG
GCGACTACCCCCAGGCGATGAGGGATAGGATCGGGGAGCGGCTGCCGACT
TTCACGGAAGAGGAGAGCGCCCTCCTGGCGGGCAGCAACGACTTCTTCGG
CCTGAACCACTACACGTCCTGGTGAGCCGCGCAGCCGCTAGATCCCGACT
CTGAGGAAGACAAGGCGACGGCGGAGCGCTTCGTAGTGCACCAGCTGGCG
TGGTGGGCCGACCCCATCTATTTCGGCGACTACCCCCAGGCGATGAGGGA
TAGGATCGGGGAGCGGCTGCCGACTTTCACGGAAGAGGAGAGCGCCCTCC
TGGCGGGCAGCAACGACTTCTTCGGCCTGAACCACTACACGTCCTGGTGA
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