mRNA_H-canaliculatus_F_contig10876.816.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female
You are viewing an mRNA, more information available on the corresponding polypeptide page
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Overview
Homology
BLAST of mRNA_H-canaliculatus_F_contig10876.816.1 vs. uniprot
Match: D8LQW3_ECTSI (EsV-1-7 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LQW3_ECTSI) HSP 1 Score: 105 bits (263), Expect = 1.810e-20 Identity = 68/134 (50.75%), Postives = 80/134 (59.70%), Query Frame = 1 Query: 1081 RNRGDHHHEGFHPPRRGAQGGVVEGGSTGRGLPYGYAGGGEVGAGGAQPPLHFSPASEKALSPRGHRRHASFDPNTDCFNHCNFLVGSGGGXXXXXXXXXXXXXEAGRRGGLFLQPLGAPEGQGYTLPFSGGGS 1482
R RGD +EG RRG GG+ +G + G G P G ++G G + L+ SP SEK+ RGHRR ASFDPNTDCF+H N+LVG G EA RRG LF QP+GA EGQGYTLP GGGS
Sbjct: 406 RGRGDRLYEGGGSFRRGGDGGMPDGAAAGHGPPQGSGADVDMGVGASF--LNLSPPSEKSTMHRGHRRLASFDPNTDCFSHFNYLVGGGS-------DGGGALAEASRRG-LFFQPVGAAEGQGYTLPPRGGGS 529
BLAST of mRNA_H-canaliculatus_F_contig10876.816.1 vs. uniprot
Match: A0A6H5KT36_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KT36_9PHAE) HSP 1 Score: 103 bits (257), Expect = 1.760e-19 Identity = 70/139 (50.36%), Postives = 82/139 (58.99%), Query Frame = 1 Query: 1066 GPARRRNRGDHHHEGFHPPRRGAQGGVVEGGSTGRGLPYGYAGGGEVGAGGAQPPLHFSPASEKALSPRGHRRHASFDPNTDCFNHCNFLVGSGGGXXXXXXXXXXXXXEAGRRGGLFLQPLGAPEGQGYTLPFSGGGS 1482
G RRR RGD+ HEG RRG GG+ + TG G ++G GG+ L+ SP SEK+ RGHRR ASFDPNTDCF+H N+L GSG EA RRG LF QP+GA EGQGY+LP GGGS
Sbjct: 438 GGGRRRGRGDYLHEGGGSFRRGGDGGMPDDDLTGSGADV------DMGVGGSF--LNLSPPSEKSTIHRGHRRLASFDPNTDCFSHFNYLGGSGSNGGGALA-------EASRRG-LFFQPVGAAEGQGYSLPPRGGGS 560 The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig10876.816.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90) Total hits: 2 ZOOMx 1POSITION0
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-canaliculatus_F_contig10876.816.1 >prot_H-canaliculatus_F_contig10876.816.1 ID=prot_H-canaliculatus_F_contig10876.816.1|Name=mRNA_H-canaliculatus_F_contig10876.816.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=534bp QVDVHCRPCEFPGCSKHPHYAFEGDKARFCASHKETGMVDVKHKRCHKTGback to top mRNA from alignment at H-canaliculatus_F_contig10876:84..4389- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-canaliculatus_F_contig10876.816.1 ID=mRNA_H-canaliculatus_F_contig10876.816.1|Name=mRNA_H-canaliculatus_F_contig10876.816.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=4306bp|location=Sequence derived from alignment at H-canaliculatus_F_contig10876:84..4389- (Hapterophycus canaliculatus Oshoro5f female)back to top Coding sequence (CDS) from alignment at H-canaliculatus_F_contig10876:84..4389- >mRNA_H-canaliculatus_F_contig10876.816.1 ID=mRNA_H-canaliculatus_F_contig10876.816.1|Name=mRNA_H-canaliculatus_F_contig10876.816.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=3204bp|location=Sequence derived from alignment at H-canaliculatus_F_contig10876:84..4389- (Hapterophycus canaliculatus Oshoro5f female)back to top |