mRNA_H-canaliculatus_F_contig10872.815.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig10872.815.1
Unique NamemRNA_H-canaliculatus_F_contig10872.815.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig10872.815.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig10872contigH-canaliculatus_F_contig10872:2557..3196 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size556
Cds size363
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig10872.815.1prot_H-canaliculatus_F_contig10872.815.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig10872 2567..3013 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928755.068995-UTR-H-canaliculatus_F_contig10872:2556..25661622928755.068995-UTR-H-canaliculatus_F_contig10872:2556..2566Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig10872 2557..2566 +
1696845551.7145646-UTR-H-canaliculatus_F_contig10872:2556..25661696845551.7145646-UTR-H-canaliculatus_F_contig10872:2556..2566Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig10872 2557..2566 +
1622928755.1089509-UTR-H-canaliculatus_F_contig10872:3013..31961622928755.1089509-UTR-H-canaliculatus_F_contig10872:3013..3196Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig10872 3014..3196 +
1696845551.744833-UTR-H-canaliculatus_F_contig10872:3013..31961696845551.744833-UTR-H-canaliculatus_F_contig10872:3013..3196Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig10872 3014..3196 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928755.0834594-CDS-H-canaliculatus_F_contig10872:2566..28181622928755.0834594-CDS-H-canaliculatus_F_contig10872:2566..2818Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10872 2567..2818 +
1696845551.7249997-CDS-H-canaliculatus_F_contig10872:2566..28181696845551.7249997-CDS-H-canaliculatus_F_contig10872:2566..2818Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10872 2567..2818 +
1622928755.0962422-CDS-H-canaliculatus_F_contig10872:2902..30131622928755.0962422-CDS-H-canaliculatus_F_contig10872:2902..3013Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10872 2903..3013 +
1696845551.734139-CDS-H-canaliculatus_F_contig10872:2902..30131696845551.734139-CDS-H-canaliculatus_F_contig10872:2902..3013Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10872 2903..3013 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig10872.815.1

>prot_H-canaliculatus_F_contig10872.815.1 ID=prot_H-canaliculatus_F_contig10872.815.1|Name=mRNA_H-canaliculatus_F_contig10872.815.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=121bp
MTCEVVDRVRIFVSIALRTMRQGLCSATVGEPIDSWTRHGARKQRCTGYE
GGKARRGLCSCTRSITPETSVATRMCDGHLQRQKVVCCARILGHAIICRC
WKLPLTCGMASLGASCTLVG*
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mRNA from alignment at H-canaliculatus_F_contig10872:2557..3196+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig10872.815.1 ID=mRNA_H-canaliculatus_F_contig10872.815.1|Name=mRNA_H-canaliculatus_F_contig10872.815.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=640bp|location=Sequence derived from alignment at H-canaliculatus_F_contig10872:2557..3196+ (Hapterophycus canaliculatus Oshoro5f female)
AGGAGAGGGGATGACATGTGAGGTTGTCGATAGAGTAAGGATTTTCGTGT
CCATTGCCCTACGAACTATGCGGCAAGGTCTGTGCTCTGCCACTGTAGGC
GAGCCCATCGATTCTTGGACTCGACACGGTGCGCGAAAACAGAGATGCAC
TGGATACGAAGGAGGAAAGGCTAGACGGGGACTCTGCTCCTGCACCCGTT
CCATTACTCCCGAGACGTCGGTCGCCACACGTATGTGTGATGGGCATCTC
CAAAGACAAAAGGTAGTTTGCTCCTGCACCCCTTCCATTACTCCCGAGAC
GTCGGTCGCCACACGTATGTGTGATGGGCATCTCCAAAGACAAAAGGTAG
TTTGCTGTGCGCGAATCCTTGGGCATGCAATCATTTGCCGGTGCTGGAAG
CTTCCGTTGACATGCGGAATGGCCTCACTGGGTGCTTCTTGCACCCTTGT
CGGGTGATGGTTTGAACCGTGTTTTCGTGCACAATGTGGGTTTGATCGGC
GTTCGGAGCCGTGCTCGGTGCGCGCTGCTACAGGCACCCGCAGATTTCAC
TCACCTGCGGCCTCACAGATGTCCCACGATCGTCCGGAAGACGTCGTCCC
CCTTCACCCTCACAACCTTAGCTGCCACGATGCCCCAATC
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig10872:2557..3196+

>mRNA_H-canaliculatus_F_contig10872.815.1 ID=mRNA_H-canaliculatus_F_contig10872.815.1|Name=mRNA_H-canaliculatus_F_contig10872.815.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=726bp|location=Sequence derived from alignment at H-canaliculatus_F_contig10872:2557..3196+ (Hapterophycus canaliculatus Oshoro5f female)
ATGACATGTGAGGTTGTCGATAGAGTAAGGATTTTCGTGTCCATTGCCCT
ACGAACTATGCGGCAAGGTCTGTGCTCTGCCACTGTAGGCGAGCCCATCG
ATTCTTGGACTCGACACGGTGCGCGAAAACAGAGATGCACTGGATACGAA
GGAGGAAAGGCTAGACGGGGACTCTGCTCCTGCACCCGTTCCATTACTCC
CGAGACGTCGGTCGCCACACGTATGTGTGATGGGCATCTCCAAAGACAAA
AGATGACATGTGAGGTTGTCGATAGAGTAAGGATTTTCGTGTCCATTGCC
CTACGAACTATGCGGCAAGGTCTGTGCTCTGCCACTGTAGGCGAGCCCAT
CGATTCTTGGACTCGACACGGTGCGCGAAAACAGAGATGCACTGGATACG
AAGGAGGAAAGGCTAGACGGGGACTCTGCTCCTGCACCCGTTCCATTACT
CCCGAGACGTCGGTCGCCACACGTATGTGTGATGGGCATCTCCAAAGACA
AAAGGTAGTTTGCTGTGCGCGAATCCTTGGGCATGCAATCATTTGCCGGT
GCTGGAAGCTTCCGTTGACATGCGGAATGGCCTCACTGGGTGCTTCTTGC
ACCCTTGTCGGGTGAGTAGTTTGCTGTGCGCGAATCCTTGGGCATGCAAT
CATTTGCCGGTGCTGGAAGCTTCCGTTGACATGCGGAATGGCCTCACTGG
GTGCTTCTTGCACCCTTGTCGGGTGA
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