mRNA_H-canaliculatus_F_contig10046.80.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig10046.80.1
Unique NamemRNA_H-canaliculatus_F_contig10046.80.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
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BLAST of mRNA_H-canaliculatus_F_contig10046.80.1 vs. uniprot
Match: D8LGI7_ECTSI (TIP120 domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LGI7_ECTSI)

HSP 1 Score: 164 bits (415), Expect = 2.760e-43
Identity = 76/83 (91.57%), Postives = 80/83 (96.39%), Query Frame = 3 
Query:  354 YLPGILDAFEKSVKHQYLLLSSLKEVIVCHATTPGLDFSPFVDQVLPHLFQHCTSDEEGVRNMVAECLGALTSMHPQKLVPEL 602
            YLPGILDAFE+SVKHQYLLLSSLKEVIVCHA TPGL+F P+VDQVLPHLFQHCTSDEEGVRNMVAECLG LTSMHPQ+LVPEL
Sbjct:  835 YLPGILDAFERSVKHQYLLLSSLKEVIVCHANTPGLEFGPYVDQVLPHLFQHCTSDEEGVRNMVAECLGVLTSMHPQRLVPEL 917
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BLAST of mRNA_H-canaliculatus_F_contig10046.80.1 vs. uniprot
Match: A0A836CDP2_9STRA (Armadillo-type protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CDP2_9STRA)

HSP 1 Score: 120 bits (300), Expect = 5.780e-28
Identity = 61/84 (72.62%), Postives = 67/84 (79.76%), Query Frame = 3 
Query:  354 YLPGILDAFEKSVKHQYLLLSSLKEVIVCHATT-PGLDFSPFVDQVLPHLFQHCTSDEEGVRNMVAECLGALTSMHPQKLVPEL 602
            YLP +LDA E S +HQYLLLSSLKEVIVCHA   P LDFS  +DQVLPHLF HC S EEGVRNMVA CLGAL +MHP ++VP L
Sbjct:  261 YLPVVLDALE-STRHQYLLLSSLKEVIVCHARARPPLDFSAALDQVLPHLFGHCQSPEEGVRNMVAACLGALATMHPDRVVPAL 343
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BLAST of mRNA_H-canaliculatus_F_contig10046.80.1 vs. uniprot
Match: A0A7S2CRP2_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2CRP2_9STRA)

HSP 1 Score: 115 bits (289), Expect = 5.200e-27
Identity = 54/83 (65.06%), Postives = 67/83 (80.72%), Query Frame = 3 
Query:  354 YLPGILDAFEKSVKHQYLLLSSLKEVIVCHATTPGLDFSPFVDQVLPHLFQHCTSDEEGVRNMVAECLGALTSMHPQKLVPEL 602
            YLP IL++   + +H YLLLS+LKEVI+ HA T GLDF P+++QVLPHL +HC S EEGVRNMVAECLGAL +MHP+ +VP L
Sbjct:  100 YLPVILESLNAN-RHHYLLLSALKEVILLHANTTGLDFGPYIEQVLPHLLKHCESAEEGVRNMVAECLGALITMHPEVIVPAL 181
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BLAST of mRNA_H-canaliculatus_F_contig10046.80.1 vs. uniprot
Match: A0A7S2UZY3_9STRA (Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2UZY3_9STRA)

HSP 1 Score: 106 bits (264), Expect = 2.380e-25
Identity = 50/70 (71.43%), Postives = 60/70 (85.71%), Query Frame = 3 
Query:  393 KHQYLLLSSLKEVIVCHATTPGLDFSPFVDQVLPHLFQHCTSDEEGVRNMVAECLGALTSMHPQKLVPEL 602
            + QYLLL++LKEVI+ HA T GLDFS +V+ VLPHL++HC S EEGVRNMVAECLGALTSMHP++LV  L
Sbjct:    5 RQQYLLLAALKEVIMYHACTAGLDFSLYVEMVLPHLYRHCESPEEGVRNMVAECLGALTSMHPEQLVSGL 74
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BLAST of mRNA_H-canaliculatus_F_contig10046.80.1 vs. uniprot
Match: A0A7S2FNG9_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2FNG9_9STRA)

HSP 1 Score: 95.9 bits (237), Expect = 1.970e-19
Identity = 50/82 (60.98%), Postives = 60/82 (73.17%), Query Frame = 3 
Query:  357 LPGILDAFEKSVKHQYLLLSSLKEVIVCHATTPGLDFSPFVDQVLPHLFQHCTSDEEGVRNMVAECLGALTSMHPQKLVPEL 602
            LP IL    +S +H YLLLS+LKEV+V HATT   DF  ++DQV+PHL +H  S EEGVRNMVAECLGAL +MH   +VP L
Sbjct:  897 LPLILTYMARS-RHHYLLLSALKEVLVLHATT-SQDFGSYIDQVIPHLLKHGQSPEEGVRNMVAECLGALITMHADSIVPML 976
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BLAST of mRNA_H-canaliculatus_F_contig10046.80.1 vs. uniprot
Match: A0A7R9VF31_9STRA (Hypothetical protein n=1 Tax=Pseudictyota dubia TaxID=2749911 RepID=A0A7R9VF31_9STRA)

HSP 1 Score: 92.8 bits (229), Expect = 1.940e-18
Identity = 46/90 (51.11%), Postives = 61/90 (67.78%), Query Frame = 3 
Query:  354 YLPGILDAFEKS-VKHQYLLLSSLKEVIVCHAT------TPGLDFSPFVDQVLPHLFQHCTSDEEGVRNMVAECLGALTSMHPQKLVPEL 602
            +LP ILDA E++  K QYLLLS+L+E+I CH            D SP +  +LPHLF+HC  +EEGVR MVAECLG+LT + P  ++P+L
Sbjct:  221 FLPAILDALEENREKKQYLLLSALRELIHCHQLGGXXXXXSAADISPSIPLILPHLFKHCADEEEGVRTMVAECLGSLTCLQPAVILPQL 310
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BLAST of mRNA_H-canaliculatus_F_contig10046.80.1 vs. uniprot
Match: A0A7S3V7P0_9STRA (Hypothetical protein n=1 Tax=Chaetoceros debilis TaxID=122233 RepID=A0A7S3V7P0_9STRA)

HSP 1 Score: 92.4 bits (228), Expect = 3.180e-18
Identity = 45/84 (53.57%), Postives = 58/84 (69.05%), Query Frame = 3 
Query:  354 YLPGILDAFEKSVKH-QYLLLSSLKEVIVCHATTPGLDFSPFVDQVLPHLFQHCTSDEEGVRNMVAECLGALTSMHPQKLVPEL 602
            +LP ILDA EK+ K+ QYLLL++L+E+I CH    G D SP + Q+LPHL  H    EEGVR MVA+CLG L  + P  ++PEL
Sbjct: 1089 FLPNILDALEKNDKNKQYLLLAALRELIYCHQQGFGGDISPSIQQILPHLKTHLADKEEGVRTMVADCLGCLACLEPDVILPEL 1172
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BLAST of mRNA_H-canaliculatus_F_contig10046.80.1 vs. uniprot
Match: A0A7S2QZD8_9STRA (Hypothetical protein n=1 Tax=Eucampia antarctica TaxID=49252 RepID=A0A7S2QZD8_9STRA)

HSP 1 Score: 88.6 bits (218), Expect = 3.480e-17
Identity = 44/84 (52.38%), Postives = 55/84 (65.48%), Query Frame = 3 
Query:  354 YLPGILDAFE-KSVKHQYLLLSSLKEVIVCHATTPGLDFSPFVDQVLPHLFQHCTSDEEGVRNMVAECLGALTSMHPQKLVPEL 602
            +LP IL A E KS K QYLLLS+L+E+I CH    G D +  +  +LPHL  HC   EEGVR MVAECLG+L  + P  ++P L
Sbjct:   53 FLPAILGALEDKSQKDQYLLLSALRELIHCHQLGGGSDIAASIPLILPHLITHCGDKEEGVRTMVAECLGSLVCLQPDVVLPSL 136
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BLAST of mRNA_H-canaliculatus_F_contig10046.80.1 vs. uniprot
Match: A0A7S2N4P0_9STRA (Hypothetical protein n=1 Tax=Helicotheca tamesis TaxID=374047 RepID=A0A7S2N4P0_9STRA)

HSP 1 Score: 89.0 bits (219), Expect = 4.300e-17
Identity = 46/87 (52.87%), Postives = 59/87 (67.82%), Query Frame = 3 
Query:  354 YLPGILDAFEK-SVKHQYLLLSSLKEVIVCHATTPGL---DFSPFVDQVLPHLFQHCTSDEEGVRNMVAECLGALTSMHPQKLVPEL 602
            +LP ILDA E+ S K QYLLLS+L+E+I C+ T  G    D S  V  +LPHL  HC+  EEGVR MVAEC+G+LT + P  ++P L
Sbjct:  243 FLPAILDALEQNSQKKQYLLLSALRELIHCYQTGGGAGGGDISSSVPLILPHLVNHCSDKEEGVRTMVAECMGSLTCLEPDVMLPRL 329
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BLAST of mRNA_H-canaliculatus_F_contig10046.80.1 vs. uniprot
Match: A0A0K9RK16_SPIOL (TIP120 domain-containing protein n=5 Tax=Chenopodiaceae TaxID=1804623 RepID=A0A0K9RK16_SPIOL)

HSP 1 Score: 87.8 bits (216), Expect = 1.240e-16
Identity = 46/84 (54.76%), Postives = 56/84 (66.67%), Query Frame = 3 
Query:  351 RYLPGILDAFEKSVKHQYLLLSSLKEVIVCHATTPGLDFSPFVDQVLPHLFQHCTSDEEGVRNMVAECLGALTSMHPQKLVPEL 602
            +YLP ILD  +   K QYLLL SLKEVIV  +T      +  VD++L  LF HC S+EEGVRN+VAECLG +  + P KLVP L
Sbjct:  886 KYLPFILDQIDHQQKKQYLLLHSLKEVIVRQSTDKAEFQASSVDKILNLLFNHCESEEEGVRNVVAECLGKVALIEPTKLVPAL 969
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig10046.80.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LGI7_ECTSI2.760e-4391.57TIP120 domain-containing protein n=2 Tax=Ectocarpu... [more]
A0A836CDP2_9STRA5.780e-2872.62Armadillo-type protein (Fragment) n=1 Tax=Tribonem... [more]
A0A7S2CRP2_9STRA5.200e-2765.06Hypothetical protein n=1 Tax=Florenciella parvula ... [more]
A0A7S2UZY3_9STRA2.380e-2571.43Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa... [more]
A0A7S2FNG9_9STRA1.970e-1960.98Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
A0A7R9VF31_9STRA1.940e-1851.11Hypothetical protein n=1 Tax=Pseudictyota dubia Ta... [more]
A0A7S3V7P0_9STRA3.180e-1853.57Hypothetical protein n=1 Tax=Chaetoceros debilis T... [more]
A0A7S2QZD8_9STRA3.480e-1752.38Hypothetical protein n=1 Tax=Eucampia antarctica T... [more]
A0A7S2N4P0_9STRA4.300e-1752.87Hypothetical protein n=1 Tax=Helicotheca tamesis T... [more]
A0A0K9RK16_SPIOL1.240e-1654.76TIP120 domain-containing protein n=5 Tax=Chenopodi... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig10046contigH-canaliculatus_F_contig10046:3574..4870 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score163.7
Seed ortholog evalue5.4e-38
Seed eggNOG ortholog2880.D8LGI7
Preferred nameCAND1
KEGG koko:K09490,ko:K17263
KEGG TC1.A.33
KEGG Pathwayko03060,ko04141,ko04918,ko05020,map03060,map04141,map04918,map05020
GOsGO:0000003,GO:0000151,GO:0000909,GO:0003002,GO:0003006,GO:0005575,GO:0005618,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005829,GO:0005886,GO:0006464,GO:0006725,GO:0006807,GO:0007049,GO:0007275,GO:0007389,GO:0008150,GO:0008152,GO:0009404,GO:0009653,GO:0009712,GO:0009719,GO:0009725,GO:0009733,GO:0009791,GO:0009987,GO:0010033,GO:0010051,GO:0010228,GO:0010265,GO:0016020,GO:0016043,GO:0016567,GO:0016999,GO:0017144,GO:0018904,GO:0018940,GO:0018958,GO:0019538,GO:0019748,GO:0019953,GO:0022402,GO:0022414,GO:0022607,GO:0030154,GO:0030312,GO:0030435,GO:0030582,GO:0030584,GO:0032446,GO:0032501,GO:0032502,GO:0032991,GO:0034293,GO:0036211,GO:0042221,GO:0042537,GO:0043086,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043385,GO:0043412,GO:0043933,GO:0043934,GO:0043935,GO:0044085,GO:0044092,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044281,GO:0044424,GO:0044444,GO:0044464,GO:0044703,GO:0048608,GO:0048646,GO:0048731,GO:0048856,GO:0048869,GO:0050790,GO:0050896,GO:0051321,GO:0051704,GO:0061458,GO:0065003,GO:0065007,GO:0065009,GO:0070647,GO:0071704,GO:0071840,GO:0071944,GO:0072490,GO:0075259,GO:1900570,GO:1900588,GO:1900591,GO:1900797,GO:1901360,GO:1901564,GO:1901615,GO:1902494,GO:1903046,GO:1990234
EggNOG free text desc.SCF complex assembly
EggNOG OGsKOG1824@1,KOG1824@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03110,ko04131,ko04147
Hectar predicted targeting categorysignal peptide
Exons2
Model size602
Cds size363
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig10046.80.1prot_H-canaliculatus_F_contig10046.80.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig10046 3813..4870 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928632.8190234-UTR-H-canaliculatus_F_contig10046:3573..38121622928632.8190234-UTR-H-canaliculatus_F_contig10046:3573..3812Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig10046 3574..3812 +
1696845504.3404617-UTR-H-canaliculatus_F_contig10046:3573..38121696845504.3404617-UTR-H-canaliculatus_F_contig10046:3573..3812Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig10046 3574..3812 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928632.840162-CDS-H-canaliculatus_F_contig10046:3812..40581622928632.840162-CDS-H-canaliculatus_F_contig10046:3812..4058Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10046 3813..4058 +
1696845504.3544745-CDS-H-canaliculatus_F_contig10046:3812..40581696845504.3544745-CDS-H-canaliculatus_F_contig10046:3812..4058Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10046 3813..4058 +
1622928632.8604057-CDS-H-canaliculatus_F_contig10046:4753..48701622928632.8604057-CDS-H-canaliculatus_F_contig10046:4753..4870Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10046 4754..4870 +
1696845504.3622897-CDS-H-canaliculatus_F_contig10046:4753..48701696845504.3622897-CDS-H-canaliculatus_F_contig10046:4753..4870Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10046 4754..4870 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig10046.80.1

>prot_H-canaliculatus_F_contig10046.80.1 ID=prot_H-canaliculatus_F_contig10046.80.1|Name=mRNA_H-canaliculatus_F_contig10046.80.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=121bp
MLIVLVLLSLLLPSKLSLFPSAAVLSFTLLLLLFGTRRYLPGILDAFEKS
VKHQYLLLSSLKEVIVCHATTPGLDFSPFVDQVLPHLFQHCTSDEEGVRN
MVAECLGALTSMHPQKLVPEL
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mRNA from alignment at H-canaliculatus_F_contig10046:3574..4870+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig10046.80.1 ID=mRNA_H-canaliculatus_F_contig10046.80.1|Name=mRNA_H-canaliculatus_F_contig10046.80.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=1297bp|location=Sequence derived from alignment at H-canaliculatus_F_contig10046:3574..4870+ (Hapterophycus canaliculatus Oshoro5f female)
TATTTCAAACAGATAGCAACAAGGAAGGAATTACCTTCTCAGCCACGTCC
TTGTCGATGATGGCGTTGTGTTGTTGTTGCTGTTGCCTATGCTGCTGCTG
CTGCTGCTGCTGCTGCTGCTGTTGTTGTTAGTGGTATTATCTCTGTGTTA
GCCTCGTTTTTTGTTGTGTCGTTACTATCGTTTGGTGCCGTCGGTGGGTG
GTGCTGATCGTATTGTTGTTGACGCTGCTGTCGCTACCGATGCTGATAGT
GCTGGTTTTGTTATCGTTGTTGCTGCCGTCGAAGTTGTCGTTGTTCCCAT
CAGCTGCAGTTCTAAGTTTCACTCTGTTGCTGTTGCTGTTTGGGACGAGA
AGGTACCTGCCTGGCATCCTGGACGCCTTCGAGAAGTCGGTAAAGCACCA
GTACCTCTTGCTGTCCTCGTTGAAGGAGGTGATCGTGTGCCACGCCACCA
CCCCGGGCCTGGACTTCAGCCCCTTTGTCGACCAGGTAAGGAAACGGGCC
GAAGGCGTCGTAATCAGTGGGCCGATGCGTCTAAAACCGTGGCACACAGT
AGCTGTGCTCCGCCATGATACGTGCACAGGCATGAACAGGGCATCGTTGC
TGTTGAGATACGATGCAAGCTTGGACTTTGGATCCAGAGTTCGTGGTAAT
TCTCTGAGACAAAGTGGATCGTCCGCGGAAAAACATGTCCATGAATCCTC
TTTCGCCACACGAGGAGTACCCCCCCCCCTCCCCCTCCGTTCTCTTTGGT
CCTTGCTGGGGGCGGCCGCTGCCCAAACTTGTCCTCGAGCGTTTTATGCC
GCTCACCCACCACGCGTGTTCTGAGGTGCTTTCCCTGACGGCCTCCATCA
TCTTGACCGTTTACGAACATCTTCTTATCGTTGCAGAAGGGAGAGCCTTG
CCCTTGGCGTGTTTGCAGTAGAGGCGCTTCGGGTTTTGACGCTTTCGATG
GCGGTGTCTCGCACGGACGTTCGTAGGCGTCCGACCGTGCTGCGTGCGCT
AGGTCCGACCCTGCTCATGATGTCGGGGAATCTCAACCTCCGGTAGCGGT
ACTCGAAGGAGCCGTGGAGGTCTTGACCCCTCTGCCCACAAAAATTTCAC
GTTATCCCCCCCCCCCAAAAAAAAATGAGAGTGAGTGTCCCCTCTCCCCA
CCGTGTTGTGTCCATGTCGACGGGAAACAGGTGCTGCCCCACCTGTTCCA
GCACTGCACCAGCGACGAGGAGGGTGTTCGCAACATGGTGGCCGAGTGCC
TGGGGGCCCTGACGAGCATGCACCCGCAGAAGCTGGTGCCGGAGCTG
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig10046:3574..4870+

>mRNA_H-canaliculatus_F_contig10046.80.1 ID=mRNA_H-canaliculatus_F_contig10046.80.1|Name=mRNA_H-canaliculatus_F_contig10046.80.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=726bp|location=Sequence derived from alignment at H-canaliculatus_F_contig10046:3574..4870+ (Hapterophycus canaliculatus Oshoro5f female)
ATGCTGATAGTGCTGGTTTTGTTATCGTTGTTGCTGCCGTCGAAGTTGTC
GTTGTTCCCATCAGCTGCAGTTCTAAGTTTCACTCTGTTGCTGTTGCTGT
TTGGGACGAGAAGGTACCTGCCTGGCATCCTGGACGCCTTCGAGAAGTCG
GTAAAGCACCAGTACCTCTTGCTGTCCTCGTTGAAGGAGGTGATCGTGTG
CCACGCCACCACCCCGGGCCTGGACTTCAGCCCCTTTGTCGACCAGATGC
TGATAGTGCTGGTTTTGTTATCGTTGTTGCTGCCGTCGAAGTTGTCGTTG
TTCCCATCAGCTGCAGTTCTAAGTTTCACTCTGTTGCTGTTGCTGTTTGG
GACGAGAAGGTACCTGCCTGGCATCCTGGACGCCTTCGAGAAGTCGGTAA
AGCACCAGTACCTCTTGCTGTCCTCGTTGAAGGAGGTGATCGTGTGCCAC
GCCACCACCCCGGGCCTGGACTTCAGCCCCTTTGTCGACCAGGTGCTGCC
CCACCTGTTCCAGCACTGCACCAGCGACGAGGAGGGTGTTCGCAACATGG
TGGCCGAGTGCCTGGGGGCCCTGACGAGCATGCACCCGCAGAAGCTGGTG
CCGGAGCTGGTGCTGCCCCACCTGTTCCAGCACTGCACCAGCGACGAGGA
GGGTGTTCGCAACATGGTGGCCGAGTGCCTGGGGGCCCTGACGAGCATGC
ACCCGCAGAAGCTGGTGCCGGAGCTG
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