mRNA_H-canaliculatus_F_contig1084.791.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig1084.791.1
Unique NamemRNA_H-canaliculatus_F_contig1084.791.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
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BLAST of mRNA_H-canaliculatus_F_contig1084.791.1 vs. uniprot
Match: D8LJM0_ECTSI (Serine/threonine-protein kinase CTR1 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJM0_ECTSI)

HSP 1 Score: 152 bits (384), Expect = 1.010e-40
Identity = 90/116 (77.59%), Postives = 96/116 (82.76%), Query Frame = 1 
Query:    4 DSNSSAKSGLGTSRSGGVSVGGG-GKAKGGKFLSRQLSLRSFQQTVKGHANTINKASNVKVEPKTFFANERTFIQWISAAVFVYGVSTALFAFDASDPNQNGVAIASAAILSAVSL 348
            DSN S KSGLG +R+G         K+   KF SRQLSLRSFQQTVK HANTINKASNVKVEPKTFFANERTFIQWISAAVFVYGVSTALFAFDAS+P+ N +AI SAAILSAVSL
Sbjct:   35 DSNVSVKSGLGLNRTGXXXXXXXXAKSSKDKFSSRQLSLRSFQQTVKNHANTINKASNVKVEPKTFFANERTFIQWISAAVFVYGVSTALFAFDASEPDANWIAITSAAILSAVSL 150
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BLAST of mRNA_H-canaliculatus_F_contig1084.791.1 vs. uniprot
Match: A0A098VSW3_9MICR (SPX domain-containing protein n=1 Tax=Mitosporidium daphniae TaxID=1485682 RepID=A0A098VSW3_9MICR)

HSP 1 Score: 55.1 bits (131), Expect = 2.230e-6
Identity = 29/58 (50.00%), Postives = 38/58 (65.52%), Query Frame = 1 
Query:  103 RQLSLRSFQQTVKGHANTINK--ASNVKVEPKTFFANERTFIQWISAAVFVYGVSTAL 270
            R   + S  QT  G+   +NK  A  V+VEPK FFANERTF+ W+  ++F+ GVSTAL
Sbjct:  588 RSPRINSRIQTTSGNHTLVNKRIAVPVRVEPKVFFANERTFLSWLHFSIFLGGVSTAL 645
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BLAST of mRNA_H-canaliculatus_F_contig1084.791.1 vs. uniprot
Match: A0A250XSU3_9CHLO (DUF202 domain-containing protein n=1 Tax=Chlamydomonas eustigma TaxID=1157962 RepID=A0A250XSU3_9CHLO)

HSP 1 Score: 52.8 bits (125), Expect = 3.250e-6
Identity = 26/52 (50.00%), Postives = 35/52 (67.31%), Query Frame = 1 
Query:  175 VKVEPKTFFANERTFIQWISAAVFVYGVSTALFAFDASDPNQNGVAIASAAI 330
            ++VEPK+FFA ERTF+ W+  AV + GVS+AL  F A  P + G  I+S  I
Sbjct:   28 LRVEPKSFFALERTFLSWMGMAVTLGGVSSALVGFSAGSPTEQGQLISSTTI 79
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BLAST of mRNA_H-canaliculatus_F_contig1084.791.1 vs. uniprot
Match: A0A7S1Y5H9_9STRA (Hypothetical protein (Fragment) n=1 Tax=Grammatophora oceanica TaxID=210454 RepID=A0A7S1Y5H9_9STRA)

HSP 1 Score: 52.0 bits (123), Expect = 3.750e-6
Identity = 30/69 (43.48%), Postives = 42/69 (60.87%), Query Frame = 1 
Query:   94 FLSRQLSLRSFQQTVKGHANTINK--ASNVKVEPKTFFANERTFIQWISAAVFVYGVSTALFAFDASDP 294
            F ++Q   R++     G   T+ K  A  +KVEPK FFANERTF+ W+ A+V + G S A+ AF  S+P
Sbjct:   22 FGNKQNDTRAY-----GDVGTLVKQRAVPIKVEPKVFFANERTFLAWLHASVLLAGASMAIVAFADSNP 85
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BLAST of mRNA_H-canaliculatus_F_contig1084.791.1 vs. uniprot
Match: A0A7S4N125_9STRA (Hypothetical protein n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4N125_9STRA)

HSP 1 Score: 53.9 bits (128), Expect = 5.340e-6
Identity = 25/49 (51.02%), Postives = 36/49 (73.47%), Query Frame = 1 
Query:  175 VKVEPKTFFANERTFIQWISAAVFVYGVSTALFAFDASDPNQNGVAIAS 321
            VKVEPK++FANERTFIQW++AA+ +  +ST LF +  S  +  G+ + S
Sbjct:   31 VKVEPKSYFANERTFIQWMTAAILMVTLSTLLFEYGTSASSAMGLVLCS 79
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BLAST of mRNA_H-canaliculatus_F_contig1084.791.1 vs. uniprot
Match: A0A7S4MZL4_9STRA (Hypothetical protein (Fragment) n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4MZL4_9STRA)

HSP 1 Score: 52.4 bits (124), Expect = 1.130e-5
Identity = 25/46 (54.35%), Postives = 31/46 (67.39%), Query Frame = 1 
Query:  178 KVEPKTFFANERTFIQWISAAVFVYGVSTALFAFDASDPNQNGVAI 315
            +VEPK+FFANERTFIQWISAA+ +  VS  LF     D    G+ +
Sbjct:  114 RVEPKSFFANERTFIQWISAALLMITVSIVLFEVGQEDARYMGIVL 159
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BLAST of mRNA_H-canaliculatus_F_contig1084.791.1 vs. uniprot
Match: A0A7S4I8N1_9EUKA (Hypothetical protein n=1 Tax=Vannella sp. CB-2014 TaxID=1487602 RepID=A0A7S4I8N1_9EUKA)

HSP 1 Score: 52.8 bits (125), Expect = 1.410e-5
Identity = 26/60 (43.33%), Postives = 39/60 (65.00%), Query Frame = 1 
Query:  169 SNVKVEPKTFFANERTFIQWISAAVFVYGVSTALFAFDASDPNQNGVAIASAAILSAVSL 348
            + +K+EPKT+FANERTF+QW+S  V + G+  AL +F    P+ N V + S     A+S+
Sbjct:  569 TRMKIEPKTYFANERTFLQWMSFCVIIQGIGIALISF----PSTNFVGLISGVCFVAISV 624
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BLAST of mRNA_H-canaliculatus_F_contig1084.791.1 vs. uniprot
Match: A0A835XZG0_9CHLO (SPX domain-containing protein n=1 Tax=Edaphochlamys debaryana TaxID=47281 RepID=A0A835XZG0_9CHLO)

HSP 1 Score: 52.8 bits (125), Expect = 1.430e-5
Identity = 31/78 (39.74%), Postives = 46/78 (58.97%), Query Frame = 1 
Query:   94 FLSRQLSLRSFQQTVKGHANTINKASNVKVEPKTFFANERTFIQWISAAVFVYGVSTALFAF----DASDPNQNGVAI 315
            F+SR L L      V   ++++ ++S +++EPKTFFANERTF+ W+  AV +  VS AL  F    ++ D    G AI
Sbjct:  594 FISRLLGL------VPPPSSSVLRSSPMRIEPKTFFANERTFLAWLHMAVTLGSVSAALLGFAGGSESDDSESGGAAI 665
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BLAST of mRNA_H-canaliculatus_F_contig1084.791.1 vs. uniprot
Match: A0A1W0E5A3_9MICR (Nrf1 n=1 Tax=Enterocytozoon hepatopenaei TaxID=646526 RepID=A0A1W0E5A3_9MICR)

HSP 1 Score: 51.2 bits (121), Expect = 1.690e-5
Identity = 23/53 (43.40%), Postives = 35/53 (66.04%), Query Frame = 1 
Query:  175 VKVEPKTFFANERTFIQWISAAVFVYGVSTALFAFDASDPNQNGVAIASAAIL 333
            V+VEPK FFANERTF+ W+  A+F+ G+ TA+   ++   N  G+ +   AI+
Sbjct:   55 VRVEPKVFFANERTFLSWVQFAIFLGGIGTAMLGLESYRANICGIVMIFVAIV 107
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BLAST of mRNA_H-canaliculatus_F_contig1084.791.1 vs. uniprot
Match: A0A7S3LBT1_9STRA (Hypothetical protein (Fragment) n=1 Tax=Amphora coffeiformis TaxID=265554 RepID=A0A7S3LBT1_9STRA)

HSP 1 Score: 50.1 bits (118), Expect = 1.720e-5
Identity = 23/32 (71.88%), Postives = 28/32 (87.50%), Query Frame = 1 
Query:  169 SNVKVEPKTFFANERTFIQWISAAVFVYGVST 264
            S V+VEPKT+FANERTFIQWISAA+ +  VS+
Sbjct:   10 SQVQVEPKTYFANERTFIQWISAALLLLTVSS 41
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig1084.791.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LJM0_ECTSI1.010e-4077.59Serine/threonine-protein kinase CTR1 n=1 Tax=Ectoc... [more]
A0A098VSW3_9MICR2.230e-650.00SPX domain-containing protein n=1 Tax=Mitosporidiu... [more]
A0A250XSU3_9CHLO3.250e-650.00DUF202 domain-containing protein n=1 Tax=Chlamydom... [more]
A0A7S1Y5H9_9STRA3.750e-643.48Hypothetical protein (Fragment) n=1 Tax=Grammatoph... [more]
A0A7S4N125_9STRA5.340e-651.02Hypothetical protein n=1 Tax=Odontella aurita TaxI... [more]
A0A7S4MZL4_9STRA1.130e-554.35Hypothetical protein (Fragment) n=1 Tax=Odontella ... [more]
A0A7S4I8N1_9EUKA1.410e-543.33Hypothetical protein n=1 Tax=Vannella sp. CB-2014 ... [more]
A0A835XZG0_9CHLO1.430e-539.74SPX domain-containing protein n=1 Tax=Edaphochlamy... [more]
A0A1W0E5A3_9MICR1.690e-543.40Nrf1 n=1 Tax=Enterocytozoon hepatopenaei TaxID=646... [more]
A0A7S3LBT1_9STRA1.720e-571.88Hypothetical protein (Fragment) n=1 Tax=Amphora co... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig1084contigH-canaliculatus_F_contig1084:19560..21097 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons4
Model size348
Cds size348
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig1084.791.1prot_H-canaliculatus_F_contig1084.791.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig1084 19560..21097 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928751.3675518-CDS-H-canaliculatus_F_contig1084:19559..196241622928751.3675518-CDS-H-canaliculatus_F_contig1084:19559..19624Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1084 19560..19624 +
1696845550.547484-CDS-H-canaliculatus_F_contig1084:19559..196241696845550.547484-CDS-H-canaliculatus_F_contig1084:19559..19624Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1084 19560..19624 +
1622928751.378898-CDS-H-canaliculatus_F_contig1084:20092..202071622928751.378898-CDS-H-canaliculatus_F_contig1084:20092..20207Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1084 20093..20207 +
1696845550.5561054-CDS-H-canaliculatus_F_contig1084:20092..202071696845550.5561054-CDS-H-canaliculatus_F_contig1084:20092..20207Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1084 20093..20207 +
1622928751.6934524-CDS-H-canaliculatus_F_contig1084:20623..206911622928751.6934524-CDS-H-canaliculatus_F_contig1084:20623..20691Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1084 20624..20691 +
1696845550.5699418-CDS-H-canaliculatus_F_contig1084:20623..206911696845550.5699418-CDS-H-canaliculatus_F_contig1084:20623..20691Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1084 20624..20691 +
1622928751.7173893-CDS-H-canaliculatus_F_contig1084:20997..210971622928751.7173893-CDS-H-canaliculatus_F_contig1084:20997..21097Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1084 20998..21097 +
1696845550.582159-CDS-H-canaliculatus_F_contig1084:20997..210971696845550.582159-CDS-H-canaliculatus_F_contig1084:20997..21097Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1084 20998..21097 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig1084.791.1

>prot_H-canaliculatus_F_contig1084.791.1 ID=prot_H-canaliculatus_F_contig1084.791.1|Name=mRNA_H-canaliculatus_F_contig1084.791.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=116bp
MDSNSSAKSGLGTSRSGGVSVGGGGKAKGGKFLSRQLSLRSFQQTVKGHA
NTINKASNVKVEPKTFFANERTFIQWISAAVFVYGVSTALFAFDASDPNQ
NGVAIASAAILSAVSL
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mRNA from alignment at H-canaliculatus_F_contig1084:19560..21097+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig1084.791.1 ID=mRNA_H-canaliculatus_F_contig1084.791.1|Name=mRNA_H-canaliculatus_F_contig1084.791.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=1538bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1084:19560..21097+ (Hapterophycus canaliculatus Oshoro5f female)
ATGGACTCGAACTCCAGCGCAAAATCGGGGCTAGGGACCAGCAGGAGCGG
CGGTGTTTCGGTTGGGTAAGGGCTGCTGTTCTCGTCGTTGTGTTGATTGC
CATGACTGTCGTTGCTGCTGCTGCCATTTGGGCGCTGCTTGTTGCCGTCC
TCGGACTGGTGCAGGCTTCTATTTCAATGGCTAATTTTGTGGCATAGGGG
TGGCGTTGATCGCAGGGGGTGGACGCAGCGTCGTCGGCCCATCCATAGAC
AAACGGTACGTACCCACGGCATGATTCGAGCCCTGTCCCTATCTATCTCT
CTATCTGTTCCCCTTCGTCGGGGGGCTGCTTTTCCTTCTTGACCTCCAAA
ACCGTAGCAACGACGGCAAGGCGAAATTTTCTAGGAGACAGCTTTGCGCT
TCCAGCTGATGACGAACGATAGCGCACAAGCTTTCTGTCGTGCCTTAGGC
GTTCGTTCGCGGGCGCGTTCATTCGCTTGCTGGTGCATGATATCTTGCGT
TCGCATTTCCTTCGTCTGCGTCTGTGGTTGCAGGGGTGGAGGGAAGGCAA
AGGGTGGGAAGTTCCTCTCGAGACAGCTGTCTCTGAGGAGCTTCCAGCAG
ACCGTGAAGGGCCACGCCAACACCATCAACAAGGCCTCCAACGTTAAGGC
AAGTTCCGTGCCGTCGACGCCAACAAACTAGAGTGCTTTGCTAGATGAAT
GCACGTGTTCGTCATTCCTTTGGAGGCCTTTCATTTGATGGCGAATTTGA
CACATCTCAAACGCGCTGTTTTTGCGACACCCCTGAAGGTGCGCTCTGTT
CTAAGGTGCCAGCATGTAACTCATTAGGATAGCTTATCTGTCACTTCCTC
TCTGACTGCTCTCTCTCTCTCTCTGACTGCTCTCTCTCTCTCTCTGACTG
CTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCT
CTCTCTCTTGCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCT
CTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTGCCTCTCTCTCTCTCTCT
CTCCGCCACACCAGGTGGAACCCAAGACCTTTTTCGCAAATGAACGGACG
TTCATCCAGTGGATTTCAGCTGCGGTCTTCGTGTGAGTTCGAAATGCACA
ACTTCGTTTGAAAAATTCAGCTTTGACAATGTGTTATGGGGGTCCGAAAA
ACTTCACAAACATTCATCGTTTTTTGCCTGAGTCCTGTTGCAAAGTCACT
TCCCGTTCGGCCGAACCATGTATCGCTGCGGACAGGTACCGGGAAGACCT
TGAAACATGGTTTTCTTTTTGAGAGAATTTGCCTGGGTTGCTGCTGCTGC
TGCTGCTGCTACTTTTGCTTAGTTTCCTACCTCAAATCACACCGAACTGA
ATCGGAACTGTCCTCGCCTTATGCTTGCTCATTTTCAGGTACGGTGTGAG
CACGGCGCTGTTCGCGTTCGACGCTTCCGACCCAAACCAAAATGGTGTCG
CCATCGCCTCCGCAGCCATCCTCTCGGCTGTTTCCCTC
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig1084:19560..21097+

>mRNA_H-canaliculatus_F_contig1084.791.1 ID=mRNA_H-canaliculatus_F_contig1084.791.1|Name=mRNA_H-canaliculatus_F_contig1084.791.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=696bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1084:19560..21097+ (Hapterophycus canaliculatus Oshoro5f female)
ATGGACTCGAACTCCAGCGCAAAATCGGGGCTAGGGACCAGCAGGAGCGG
CGGTGTTTCGGTTGGATGGACTCGAACTCCAGCGCAAAATCGGGGCTAGG
GACCAGCAGGAGCGGCGGTGTTTCGGTTGGGGGTGGAGGGAAGGCAAAGG
GTGGGAAGTTCCTCTCGAGACAGCTGTCTCTGAGGAGCTTCCAGCAGACC
GTGAAGGGCCACGCCAACACCATCAACAAGGCCTCCAACGTTAAGGGGTG
GAGGGAAGGCAAAGGGTGGGAAGTTCCTCTCGAGACAGCTGTCTCTGAGG
AGCTTCCAGCAGACCGTGAAGGGCCACGCCAACACCATCAACAAGGCCTC
CAACGTTAAGGTGGAACCCAAGACCTTTTTCGCAAATGAACGGACGTTCA
TCCAGTGGATTTCAGCTGCGGTCTTCGTGTGGAACCCAAGACCTTTTTCG
CAAATGAACGGACGTTCATCCAGTGGATTTCAGCTGCGGTCTTCGTGTAC
GGTGTGAGCACGGCGCTGTTCGCGTTCGACGCTTCCGACCCAAACCAAAA
TGGTGTCGCCATCGCCTCCGCAGCCATCCTCTCGGCTGTTTCCCTCGTAC
GGTGTGAGCACGGCGCTGTTCGCGTTCGACGCTTCCGACCCAAACCAAAA
TGGTGTCGCCATCGCCTCCGCAGCCATCCTCTCGGCTGTTTCCCTC
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