mRNA_H-canaliculatus_F_contig10826.782.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig10826.782.1
Unique NamemRNA_H-canaliculatus_F_contig10826.782.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig10826.782.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig10826contigH-canaliculatus_F_contig10826:308..1907 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size255
Cds size249
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig10826.782.1prot_H-canaliculatus_F_contig10826.782.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig10826 308..1903 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928749.566448-CDS-H-canaliculatus_F_contig10826:307..3921622928749.566448-CDS-H-canaliculatus_F_contig10826:307..392Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10826 308..392 -
1696845549.8070734-CDS-H-canaliculatus_F_contig10826:307..3921696845549.8070734-CDS-H-canaliculatus_F_contig10826:307..392Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10826 308..392 -
1622928749.5809793-CDS-H-canaliculatus_F_contig10826:1739..19031622928749.5809793-CDS-H-canaliculatus_F_contig10826:1739..1903Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10826 1740..1903 -
1696845549.820405-CDS-H-canaliculatus_F_contig10826:1739..19031696845549.820405-CDS-H-canaliculatus_F_contig10826:1739..1903Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10826 1740..1903 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928749.60123-UTR-H-canaliculatus_F_contig10826:1903..19071622928749.60123-UTR-H-canaliculatus_F_contig10826:1903..1907Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig10826 1904..1907 -
1696845549.829249-UTR-H-canaliculatus_F_contig10826:1903..19071696845549.829249-UTR-H-canaliculatus_F_contig10826:1903..1907Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig10826 1904..1907 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig10826.782.1

>prot_H-canaliculatus_F_contig10826.782.1 ID=prot_H-canaliculatus_F_contig10826.782.1|Name=mRNA_H-canaliculatus_F_contig10826.782.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=83bp
MFFGAVPRSAAAAESTGHDSEGEAACCAAILADDPGERFAGGGEGGLPII
RPKACFHHGCRAMMWDAPDPDRVSSPTTAAIRQ
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mRNA from alignment at H-canaliculatus_F_contig10826:308..1907-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig10826.782.1 ID=mRNA_H-canaliculatus_F_contig10826.782.1|Name=mRNA_H-canaliculatus_F_contig10826.782.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=1600bp|location=Sequence derived from alignment at H-canaliculatus_F_contig10826:308..1907- (Hapterophycus canaliculatus Oshoro5f female)
GTGTATGTTCTTCGGCGCTGTACCGCGGTCGGCAGCAGCGGCGGAATCGA
CAGGCCACGACTCTGAGGGGGAGGCAGCCTGTTGTGCAGCCATTTTGGCC
GACGACCCGGGCGAGCGCTTCGCAGGCGGAGGTGAAGGGGGGCTGCCGAT
CATAAGGCCCAAGGCGTGGTGAGTGTTGACGTAGTTGTGGGTCGACAAGG
AGAAGCAGAGCTCTCTCTGTACACACACACGCACACACACAAGCAAGCGT
GATCATCTTGCTCGAGGTCAACGATCATCGTGCCCACCAACATACAGCCT
ATCCTCGTTGAAGATAGAGGCGCCCGCTTGTACGACAGCGGTTCCGGAGC
GTTCGATTCGTTTCGCCTGCGTGTGCTGCTCCGTGTGCATGCTGCTTCGA
TAAGCCCGCGGAGTGGGCTGTCCTTCCTTCCTTTCCTCAAGAGTCAAAGT
CCAGAGGTGGCCTGCCAAGACACGGGGAACAATTCAGAAGAAATAATTTC
CCCTTTTTCGATATCCATTCGTCCTCTGTCCGTGTCTCGTACAGGTCGAC
ATGGATTAATAGCCATTTGTACAATTTTGTACCACCTTTAGACTAGAGAT
ATGCGCGGAAATGAGATGTGGGCGTGGCGCAAACCCCGAACAGCCGAAGC
GCAGAAAAGAGCAAAAACACGCAAGAGAATTATTGCAGCAACAATGCGTG
ATGAAATAACTTTTTCACCGACGATTTTGTACGTACCTTCTTGGTAGAAT
GATTGACGCCGATGCGCCGTTTTTATCGTCGTCTGTCCGTGCACCTTTCT
ACTCAAGTAACTCTCACTTTAAGTAACTTCTTGCCACTCATTTTTAAAGA
AAAAACATAACAACACCGTTCCGAAGAACACCTCCTGAGGTACGTCGTGT
GAGGCGTACCCCGAGGCTTCTGTTGAGTTCAAAACAGACAGTGAGGGTTC
ATTGATGGGGACAAAAGCATGAAGAGGATGAGTCTGTATGGAACCTACCC
CAATTCATTGAATGGAACAGAAGAAGATACGCAATGCTTCGAAATTGAAC
GTGTTATGATGGATCATGAACCATCGTAAGCGACACAACATGTGAGAGCG
TAAGTTATCGAAAAATGCTCCCTGTGAAACGACGCGATCTGCTGGTCGTG
AAGCAAAAGGCAAAAAGAAATGGTACAAGCATTCGTATCAGGTTACAGCA
GACGGGAATGTTAGTGTTGCACGGCACCCGTGGGAGCAGCTGACGGTTTC
GGCACACTTTCATTTGTCCCGTCGAGCGTACGACGTGTACCCTGCATTCC
GTTGCAAACTCGTGCTGCTTTCCTCCTGCCATGACGGCTGTGGGCTGCCC
AGGGGAGTGTTGCGGTGACCCCGTGAGCTCCCTGCAGGCGGCTGGAAGTG
CCCGGTGACATGCATGCGCCAGCTCCGATGTCATAATGTCATGGGTTGGT
CCAACTGCAGCCTTTGCTCGTCATGTTGCGTCCGCACGTTGTCTGCGGGT
TTCGTCTCGCGGCAGCTTCCACCATGGCTGCCGGGCGATGATGTGGGACG
CGCCCGACCCGGACAGGGTCAGCAGCCCCACCACGGCGGCCATCCGCCAG
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig10826:308..1907-

>mRNA_H-canaliculatus_F_contig10826.782.1 ID=mRNA_H-canaliculatus_F_contig10826.782.1|Name=mRNA_H-canaliculatus_F_contig10826.782.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=498bp|location=Sequence derived from alignment at H-canaliculatus_F_contig10826:308..1907- (Hapterophycus canaliculatus Oshoro5f female)
ATGTTCTTCGGCGCTGTACCGCGGTCGGCAGCAGCGGCGGAATCGACAGG
CCACGACTCTGAGGGGGAGGCAGCCTGTTGTGCAGCCATTTTGGCCGACG
ACCCGGGCGAGCGCTTCGCAGGCGGAGGTGAAGGGGGGCTGCCGATCATA
AGGCCCAAGGCGTGATGTTCTTCGGCGCTGTACCGCGGTCGGCAGCAGCG
GCGGAATCGACAGGCCACGACTCTGAGGGGGAGGCAGCCTGTTGTGCAGC
CATTTTGGCCGACGACCCGGGCGAGCGCTTCGCAGGCGGAGGTGAAGGGG
GGCTGCCGATCATAAGGCCCAAGGCGTGCTTCCACCATGGCTGCCGGGCG
ATGATGTGGGACGCGCCCGACCCGGACAGGGTCAGCAGCCCCACCACGGC
GGCCATCCGCCAGCTTCCACCATGGCTGCCGGGCGATGATGTGGGACGCG
CCCGACCCGGACAGGGTCAGCAGCCCCACCACGGCGGCCATCCGCCAG
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