mRNA_H-canaliculatus_F_contig10045.79.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig10045.79.1
Unique NamemRNA_H-canaliculatus_F_contig10045.79.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig10045.79.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig10045contigH-canaliculatus_F_contig10045:4363..4654 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Model size173
Cds size102
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig10045.79.1prot_H-canaliculatus_F_contig10045.79.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig10045 4432..4654 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928632.684408-UTR-H-canaliculatus_F_contig10045:4362..44311622928632.684408-UTR-H-canaliculatus_F_contig10045:4362..4431Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig10045 4363..4431 +
1696845504.2032514-UTR-H-canaliculatus_F_contig10045:4362..44311696845504.2032514-UTR-H-canaliculatus_F_contig10045:4362..4431Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig10045 4363..4431 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928632.6942089-CDS-H-canaliculatus_F_contig10045:4431..44481622928632.6942089-CDS-H-canaliculatus_F_contig10045:4431..4448Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10045 4432..4448 +
1696845504.2116578-CDS-H-canaliculatus_F_contig10045:4431..44481696845504.2116578-CDS-H-canaliculatus_F_contig10045:4431..4448Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10045 4432..4448 +
1622928632.7049675-CDS-H-canaliculatus_F_contig10045:4569..46541622928632.7049675-CDS-H-canaliculatus_F_contig10045:4569..4654Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10045 4570..4654 +
1696845504.2226138-CDS-H-canaliculatus_F_contig10045:4569..46541696845504.2226138-CDS-H-canaliculatus_F_contig10045:4569..4654Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10045 4570..4654 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig10045.79.1

>prot_H-canaliculatus_F_contig10045.79.1 ID=prot_H-canaliculatus_F_contig10045.79.1|Name=mRNA_H-canaliculatus_F_contig10045.79.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=34bp
MKPNSGYGQAGLHLASQFMRREKVDPPAPLENKG
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mRNA from alignment at H-canaliculatus_F_contig10045:4363..4654+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig10045.79.1 ID=mRNA_H-canaliculatus_F_contig10045.79.1|Name=mRNA_H-canaliculatus_F_contig10045.79.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=292bp|location=Sequence derived from alignment at H-canaliculatus_F_contig10045:4363..4654+ (Hapterophycus canaliculatus Oshoro5f female)
ATACTCGAGGCCAACCTTCTGTCGGCGCCCGGGTTACGGCCTCCACCGCC
GCCGACTCTGCGGTGAACCATGAAGCCCAACTCAGGGTGAGGAGGAAGGC
AACGTGCATGAAGCCCAGGAGCACTTGTTGTTTCGTTTGTGGTTTCAACC
AATGGACCCCTGTAACCTAGCCCCGGCCTCCGTTCTACCCCATATTGTCC
GCCGCAGGTATGGTCAAGCCGGGCTTCATCTCGCTAGCCAGTTCATGCGG
AGGGAAAAGGTTGACCCCCCGGCTCCCCTCGAGAACAAGGGC
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig10045:4363..4654+

>mRNA_H-canaliculatus_F_contig10045.79.1 ID=mRNA_H-canaliculatus_F_contig10045.79.1|Name=mRNA_H-canaliculatus_F_contig10045.79.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=204bp|location=Sequence derived from alignment at H-canaliculatus_F_contig10045:4363..4654+ (Hapterophycus canaliculatus Oshoro5f female)
ATGAAGCCCAACTCAGGATGAAGCCCAACTCAGGGTATGGTCAAGCCGGG
CTTCATCTCGCTAGCCAGTTCATGCGGAGGGAAAAGGTTGACCCCCCGGC
TCCCCTCGAGAACAAGGGCGTATGGTCAAGCCGGGCTTCATCTCGCTAGC
CAGTTCATGCGGAGGGAAAAGGTTGACCCCCCGGCTCCCCTCGAGAACAA
GGGC
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