mRNA_H-canaliculatus_F_contig10813.769.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig10813.769.1
Unique NamemRNA_H-canaliculatus_F_contig10813.769.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
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BLAST of mRNA_H-canaliculatus_F_contig10813.769.1 vs. uniprot
Match: A0A6H5J746_9PHAE (UBA domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5J746_9PHAE)

HSP 1 Score: 105 bits (261), Expect = 1.910e-20
Identity = 62/85 (72.94%), Postives = 65/85 (76.47%), Query Frame = 1 
Query:  208 SQTRHDPETARLARLAALEGRTATGREEGQGGAERARGETA-PLLAASDHDIMTLQDMGFTSTEAREALQFTNGDVEAAASYLAA 459
            S  RHDPETARLARLAALEGRT      G         E A PLLAASDHD++TLQDMGFT+ EAREALQFTNGDVEAAASYLAA
Sbjct:  341 SGRRHDPETARLARLAALEGRT------GAXXXXXXXXEAAAPLLAASDHDVLTLQDMGFTAAEAREALQFTNGDVEAAASYLAA 419
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BLAST of mRNA_H-canaliculatus_F_contig10813.769.1 vs. uniprot
Match: A0A835Z2V1_9STRA (UBA domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z2V1_9STRA)

HSP 1 Score: 56.6 bits (135), Expect = 9.680e-5
Identity = 25/46 (54.35%), Postives = 36/46 (78.26%), Query Frame = 1 
Query:  319 GETAPLLAASDHDIMTLQDMGFTSTEAREALQFTNGDVEAAASYLA 456
            G T+ LL+ +DH++M LQDMG+++ +AREAL  T GD+ AA +YLA
Sbjct:  371 GATSSLLSNTDHEVMMLQDMGYSADDAREALTHTEGDINAAVAYLA 416
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig10813.769.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5J746_9PHAE1.910e-2072.94UBA domain-containing protein n=2 Tax=Ectocarpus T... [more]
A0A835Z2V1_9STRA9.680e-554.35UBA domain-containing protein n=1 Tax=Tribonema mi... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig10813contigH-canaliculatus_F_contig10813:2022..4599 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score113.2
Seed ortholog evalue8e-23
Seed eggNOG ortholog2880.D7G2V6
Preferred nameRHBDD2
KEGG koko:K05289,ko:K09651,ko:K09652
KEGG Pathwayko00563,ko01100,map00563,map01100
GOsGO:0000139,GO:0000165,GO:0001889,GO:0002673,GO:0002682,GO:0002683,GO:0002694,GO:0002695,GO:0002791,GO:0003674,GO:0003824,GO:0004175,GO:0004252,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0005794,GO:0005798,GO:0006355,GO:0006357,GO:0006464,GO:0006468,GO:0006508,GO:0006793,GO:0006796,GO:0006807,GO:0006950,GO:0006984,GO:0006991,GO:0007154,GO:0007165,GO:0007275,GO:0008150,GO:0008152,GO:0008233,GO:0008236,GO:0009410,GO:0009889,GO:0009891,GO:0009893,GO:0009894,GO:0009896,GO:0009987,GO:0010467,GO:0010468,GO:0010556,GO:0010557,GO:0010604,GO:0010628,GO:0012505,GO:0016020,GO:0016021,GO:0016310,GO:0016485,GO:0016787,GO:0017171,GO:0019219,GO:0019222,GO:0019538,GO:0023014,GO:0023052,GO:0030135,GO:0030137,GO:0031090,GO:0031224,GO:0031323,GO:0031325,GO:0031326,GO:0031328,GO:0031347,GO:0031410,GO:0031974,GO:0031981,GO:0031982,GO:0031984,GO:0032101,GO:0032501,GO:0032502,GO:0032814,GO:0032815,GO:0032879,GO:0032880,GO:0032933,GO:0033554,GO:0034399,GO:0035103,GO:0035556,GO:0036211,GO:0042176,GO:0042221,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043412,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044425,GO:0044428,GO:0044431,GO:0044444,GO:0044446,GO:0044464,GO:0045732,GO:0045893,GO:0045935,GO:0045944,GO:0048471,GO:0048513,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048583,GO:0048731,GO:0048732,GO:0048856,GO:0050708,GO:0050727,GO:0050789,GO:0050794,GO:0050865,GO:0050866,GO:0050896,GO:0051046,GO:0051049,GO:0051171,GO:0051173,GO:0051223,GO:0051246,GO:0051247,GO:0051249,GO:0051250,GO:0051252,GO:0051254,GO:0051604,GO:0051716,GO:0060255,GO:0061008,GO:0065007,GO:0070011,GO:0070013,GO:0070201,GO:0071501,GO:0071704,GO:0080090,GO:0080134,GO:0090087,GO:0097708,GO:0098588,GO:0098791,GO:0140096,GO:1901564,GO:1902680,GO:1903506,GO:1903508,GO:1903530,GO:2000112,GO:2001141
EggNOG free text desc.serine-type endopeptidase activity
EggNOG OGsKOG2632@1,KOG2632@2759
COG Functional cat.P
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko01002
Hectar predicted targeting categoryother localisation
Exons2
Model size1983
Cds size348
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig10813.769.1prot_H-canaliculatus_F_contig10813.769.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig10813 3543..4485 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928747.9325435-UTR-H-canaliculatus_F_contig10813:2021..35421622928747.9325435-UTR-H-canaliculatus_F_contig10813:2021..3542Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig10813 2022..3542 -
1696845549.149516-UTR-H-canaliculatus_F_contig10813:2021..35421696845549.149516-UTR-H-canaliculatus_F_contig10813:2021..3542Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig10813 2022..3542 -
1622928747.9853127-UTR-H-canaliculatus_F_contig10813:4485..45991622928747.9853127-UTR-H-canaliculatus_F_contig10813:4485..4599Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig10813 4486..4599 -
1696845549.175853-UTR-H-canaliculatus_F_contig10813:4485..45991696845549.175853-UTR-H-canaliculatus_F_contig10813:4485..4599Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig10813 4486..4599 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928747.9545107-CDS-H-canaliculatus_F_contig10813:3542..36321622928747.9545107-CDS-H-canaliculatus_F_contig10813:3542..3632Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10813 3543..3632 -
1696845549.160258-CDS-H-canaliculatus_F_contig10813:3542..36321696845549.160258-CDS-H-canaliculatus_F_contig10813:3542..3632Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10813 3543..3632 -
1622928747.9710495-CDS-H-canaliculatus_F_contig10813:4227..44851622928747.9710495-CDS-H-canaliculatus_F_contig10813:4227..4485Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10813 4228..4485 -
1696845549.1681302-CDS-H-canaliculatus_F_contig10813:4227..44851696845549.1681302-CDS-H-canaliculatus_F_contig10813:4227..4485Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10813 4228..4485 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig10813.769.1

>prot_H-canaliculatus_F_contig10813.769.1 ID=prot_H-canaliculatus_F_contig10813.769.1|Name=mRNA_H-canaliculatus_F_contig10813.769.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=116bp
MCRTAKYTRLTALHCVVCHRLTALHDLGCSGSQTRHDPETARLARLAALE
GRTATGREEGQGGAERARGETAPLLAASDHDIMTLQDMGFTSTEAREALQ
FTNGDVEAAASYLAA*
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mRNA from alignment at H-canaliculatus_F_contig10813:2022..4599-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig10813.769.1 ID=mRNA_H-canaliculatus_F_contig10813.769.1|Name=mRNA_H-canaliculatus_F_contig10813.769.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=2578bp|location=Sequence derived from alignment at H-canaliculatus_F_contig10813:2022..4599- (Hapterophycus canaliculatus Oshoro5f female)
CAATGAACCCTCACTGTTTTGAACTCAACAGAAGCCTCGGGGTACGCCTC
ACACGACGTACCTCAGGAGGTGTTCTAACGGTGTTATGTTTTCTTTAAAA
ACATCTCTTGTCGAATGTGCCGCACGGCCAAATACACGCGTTTGACGGCA
TTGCACTGCGTTGTGTGTCATCGTCTGACGGCATTGCACGACCTCGGTTG
CAGCGGCAGCCAGACACGGCATGACCCAGAGACGGCTCGGTTGGCCAGAC
TGGCCGCCCTTGAAGGAAGGACAGCAACCGGCAGGGAAGAAGGGCAAGGG
GGAGCAGAGAGGGCAAGGGGGGAGACCGCTCCGTTGCTTGCGGCTAGCGA
CCACGACATCATGACGCTTCAGGTTGGGCGGTCTTCAATCATGGGCAATC
ATGGGCTTGTTGCTTGTGATTGTTGCTACCGCTGTTGTTGGTCCCTTGGT
GTTGTGGCGACTGGCAGTTTGTGCGGTTGTTTGCTTTCACGAATCTTTGT
GCTCCAGACGTCGTGTCCCTTGAGATGGGACTTGTGAAGTGCTGTCGGAT
CATATTACATCTCCCGATAACCGAGGGCAGAGCGACGTCTCCGTCACGCC
GCTACCGAGTATTCATGTTCACAGCATGGGTGGATCGTACCTACATGTAA
ACATGTTTTATTAGTGAAGAAACCGAGGTAGTTAGAGCTACTTGAAAACT
TTTTAGAACTAAGGAGACCTCGACGTTGGACTCGCATGTAGGCTGTAGAC
ATGCAGGCATGTAGGCGTGTAGGCGAGCGAAGCCCGGCAACGAAACTGTA
CCAGGACCTCCTGTGCACGTTGCAAGCATCGCACATCGAATAGGAGGGAA
ACACCAAGGCCGAGGGCTTGTGGGGAGAGGGTACACAAATAAATATCAAA
TTTTCTAATGTGTCCCATCCTGTTCAATTTTCCTTTCCTGTCTCTCTTTT
TTCGTATTGTAATGCAGGACATGGGTTTCACTTCCACGGAGGCACGTGAG
GCCTTGCAGTTTACCAACGGAGACGTGGAGGCTGCTGCTTCCTACCTTGC
AGCCTGAAAAGCACGATCCTAGCGTCGCACAGCAGTGGTCCCCGCCAATT
TGTCACCTACGGCATAACGCTGGCCTTACCTATATCGCTCTACCGCCATC
CGTGATGGTCACGACTCCGCCGTGCTCTGGCTGTATTTCAATTTGTGGTG
CCCTCCTGGCACGAAGGAGAAAGCCTGGTTGGATTGCAAAACCATGGCAG
GCAAGTAGTCGCGGTCGCTCGCTGTCGGGGTGGAAAAGGAAGCTTTTAAT
ATCAGCTATTAAACTCAGCTTTGAATACGGGCTATTAAAACAAGCTAAAA
ATACTCACCTAAAATTCAAGCTATCAACCACACCAAGAAGCTGAAGACCA
ACGGACGACCAACGCACCTCGGTGGGAATGGAGGGTGGGGCATGGCAGTG
TACGAGGGGCTCAACAGGGACGAGTGACGTCATGGGCGAGGTGGCAGTGC
TTTCCGTTTGATTGGCATTTGATCGGCAATTTCTGGCGATTTGCGGCTTT
CTGTCGCATTTTGTCACGCGATGTAGACCACGAGAAGAAGAGTCGAAGAC
GACGCATCTTGAGGGATGGTGAGGCCGAACTCGACAGAGGAAGCAACCTC
AGCGGCGCGGCGGCGGCAGCTCCGCATAGGGTTGCTGTTCCTGTGAAGAT
GCAGCTTGCAAGGGTCGCTCGTGTCAAACGTGTTGTAGCCCAGGTCAGGC
CAAATGGTGATTCCCGCCAATGTCCAGGGGTAACGGAATGTCATCCAGCG
GCGCGTACTGCACGGTTGTGTGTGTTGGGCACTTGCTGGGAAAGCTTCTG
GTGGCGTTTTGCTTTGGTGTATTGCGAGGTTCGTTAAGCACGTCTGCATG
CCGATTCACTTGGACGATGCCTATCGTTGTCTTTGGTGCTGTTCCGGCCG
TTTCCGGTCGTGTTTTTCTTCGCACTATCCTGACAGCCGATATCTGCGTT
GTTGGTTGGGTGTGTATAGGGGACGTGCATATCTGGAGATTTTCAATTGA
GTCACGGGGCTGACGATACCTAGACTGTCGCAAGTCGCATGAAGATCTTC
CCACCTTCCTGTTGTTTTGGCTGTTCCTGTTGTTTTGACTTCATCTGCAT
GTACATTTTTGTCTAATATTGGACGTCCTCACTTCGGGTGTGCTCGTGAA
ACCTTTCGCGCGGCTCTTGTCGTGTGCGTATCGGCCCGTCTGTTCGCATA
TTTTCTCCGCTTGGGCACGACACTCTTCTACTTGGGACCACCCCATGTGT
TCCGATCTGCCGTCTCTTGTCCATAGAAATCTATAAGTCGCTAGCTGCCC
GAGACCCGCAGAGCGTCTGAGGGGGCAAATCCTCACACCAAGTTGGCGCG
TGTGGGCGCTGGTGATTTCCCCCGGCACTCCGATGCAAGATATTTGCGCA
TTTTTGCGCGTGAGGCTCTAGTGCGGCAATCGAAGGGATCGGAGGGTGCG
CCGCTTGGAAAGGCGGTTTCGAAGCGCACAGCAGCAGCCGTGACTCCCAA
GTCCCCAATTCGTATACCCACCTAATCT
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig10813:2022..4599-

>mRNA_H-canaliculatus_F_contig10813.769.1 ID=mRNA_H-canaliculatus_F_contig10813.769.1|Name=mRNA_H-canaliculatus_F_contig10813.769.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=696bp|location=Sequence derived from alignment at H-canaliculatus_F_contig10813:2022..4599- (Hapterophycus canaliculatus Oshoro5f female)
ATGTGCCGCACGGCCAAATACACGCGTTTGACGGCATTGCACTGCGTTGT
GTGTCATCGTCTGACGGCATTGCACGACCTCGGTTGCAGCGGCAGCCAGA
CACGGCATGACCCAGAGACGGCTCGGTTGGCCAGACTGGCCGCCCTTGAA
GGAAGGACAGCAACCGGCAGGGAAGAAGGGCAAGGGGGAGCAGAGAGGGC
AAGGGGGGAGACCGCTCCGTTGCTTGCGGCTAGCGACCACGACATCATGA
CGCTTCAGATGTGCCGCACGGCCAAATACACGCGTTTGACGGCATTGCAC
TGCGTTGTGTGTCATCGTCTGACGGCATTGCACGACCTCGGTTGCAGCGG
CAGCCAGACACGGCATGACCCAGAGACGGCTCGGTTGGCCAGACTGGCCG
CCCTTGAAGGAAGGACAGCAACCGGCAGGGAAGAAGGGCAAGGGGGAGCA
GAGAGGGCAAGGGGGGAGACCGCTCCGTTGCTTGCGGCTAGCGACCACGA
CATCATGACGCTTCAGGACATGGGTTTCACTTCCACGGAGGCACGTGAGG
CCTTGCAGTTTACCAACGGAGACGTGGAGGCTGCTGCTTCCTACCTTGCA
GCCTGAGACATGGGTTTCACTTCCACGGAGGCACGTGAGGCCTTGCAGTT
TACCAACGGAGACGTGGAGGCTGCTGCTTCCTACCTTGCAGCCTGA
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