mRNA_H-canaliculatus_F_contig1080.758.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female
Overview
Homology
BLAST of mRNA_H-canaliculatus_F_contig1080.758.1 vs. uniprot
Match: D8LF10_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LF10_ECTSI) HSP 1 Score: 715 bits (1846), Expect = 1.320e-247 Identity = 439/710 (61.83%), Postives = 498/710 (70.14%), Query Frame = 3 Query: 132 MEWRDLEVWRRQRPFIGAELRKDAPDHLARLGLATSFVFVVGMAEGARVSAVKGDLKFPIRYAMYNAIPSFVGGKVPASSVASAMANAPPLRTCPRAAAHAANLRALRTAVAGYTVLSVVFQVALAGGRGTEAHQQAVAEGLEMPSLSAASSGAGSGSAGGVVRLCGARGLEPALVAAAAGRGGYRAPVLPVVISGGAFSRERGIVHHSSRGLSNLAAFSLPEGARAAVAKCSPRPCYYRIDRDRLFCREAWKPVASEVAAVGASLNDDRGMVLVIEADALSSDDPQGLMSPPAKSAATGARSGGGVGLGGRLGEDQALWGLSMLRRAIEEKRERENSGRVASVLLAERRMAEVEGSTT--VSIDARAALLLSVLSWAQQWAVEGGANDAVSLSSRSSEGSLSRPVDDETETLVHEVAAPKLPENDAAAGSATAMTTAQAEDTAAVFDAEDDAAAPSGEEARGTGEEEEEVLEVR-------DVTTPPDDEDQTVRPSTTARVLGTLEGVGRGVRVAVAPVGRVWSAAGRSLSVAYAWAEERRRRVSPPEDAGVCRRTLLYDTDDDESFRWLAAQMLRTGWTVVRTTSQLGRGCGYLPVLVHRFSDESTLTAAARHVAGDADGSPVCAVVHNWDCAAEARHLLRGAPRSTSGQEPEAQGPRSSAEVICTAEVGEDLFQFVRWQLLSGATTEQVQKGLDELFGAFYEADEE 2234 M WRD+EVWRRQRP++ AE+RKDAPDHLARLGLATSFVFVVGMAEGA VSA+KGDLKFP RYA+YN IPSFVGGKVPASSVASAMA PP+R CPRAAAHAANLRALRTAVAGYTVLSVVFQVALAGGRG EA+QQAVA+GLE+PS SA SG G GSAGGVVRLCGARGLEPALVA AGRGGYR P+LPVV+SGG F G S + A+ L EGA +AVAK SPRPCYYRI DR+FCREAW+PV S +A GA+ +D R +VLV+EADA+SSD PQ LMSPP + G GRLGEDQA+WGL+MLRRA+EE+R +GR+ASVLLAERR+ EGSTT VSIDARAALLLSVLSWA+Q G +DA++ + +S G+ D E V E A L E+ AG TA A DT F A D+ G + E D T DD++Q ST ARVL LEGVGRGVRVA A +G+V S GRSL AW E RR DAG+ R L+YDTDDDESFRWLAA+ML+ GW + R TS+ R +PVLVH SDE TLTAAA HV G+ VCAVVH+WDC EAR LL GA + E A + AEVICTAEVGEDLFQFVRWQLLSGATTEQVQ+GLD+LFGAFYE + E Sbjct: 1 MAWRDVEVWRRQRPYVNAEIRKDAPDHLARLGLATSFVFVVGMAEGATVSALKGDLKFPTRYAIYNTIPSFVGGKVPASSVASAMATPPPVRACPRAAAHAANLRALRTAVAGYTVLSVVFQVALAGGRGMEAYQQAVADGLEVPSWSA--SGFGDGSAGGVVRLCGARGLEPALVAPMAGRGGYRTPILPVVVSGGGFGHRSGGWRSS-----DPASSFLSEGALSAVAKVSPRPCYYRIGGDRVFCREAWQPVVSALAEAGAT-SDSREIVLVMEADAVSSDAPQTLMSPPREV----------KGGEGRLGEDQAVWGLAMLRRALEERRRERGAGRLASVLLAERRLVCAEGSTTTTVSIDARAALLLSVLSWAEQC---HGDDDALADEANASPGNSGSSADGEPAGFVAEPIA--LGEDRDPAGLTTAAAAADKLDTTEGFVAPDE---ELGADTAAVAEXXXXXXXXXXXXGVDGDATARADDDEQGPSASTAARVLVVLEGVGRGVRVAAARLGQVRSTMGRSLGAVSAWLVENGRRRPTTPDAGI-NRVLVYDTDDDESFRWLAAKMLKVGWAIERQTSERLRNEAGVPVLVHSCSDEKTLTAAAGHVV---KGANVCAVVHSWDCGVEARRLLVGARETVLPDEGRA-ARQPCAEVICTAEVGEDLFQFVRWQLLSGATTEQVQQGLDDLFGAFYETERE 679
BLAST of mRNA_H-canaliculatus_F_contig1080.758.1 vs. uniprot
Match: A0A6H5K3C7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K3C7_9PHAE) HSP 1 Score: 491 bits (1263), Expect = 5.050e-162 Identity = 321/583 (55.06%), Postives = 372/583 (63.81%), Query Frame = 3 Query: 492 FQVALAGGRGTEAHQQAVAEGLEMPSLSAASSGAGSGSAGGVVRLCGARGLEPALVAAAAGRGGYRAPVLPVVISGGAFSRERGIVHHSSRGL--SNLAAFSLPEGARAAVAKCSPRPCYYRIDRDRLFCREAWKPVASEVAAVGASLNDDRGMVLVIEADALSSDDPQGLMSPPAKSAATGARSGGGVGLGGRLGEDQALWGLSMLRRAIEEKRERENSGRVASVLLAERRMAEVEGSTTVSIDARAALLLSVLSWAQQWAVEGGANDAVSLSSRSSEGSLSRPVDDETETLVHEVAAPKLPENDAAAGSATAMTTAQAEDTAAVFDAEDDAAAPSGEEARGTGEEEEEVLEVRDVTTPPDDEDQTVRPSTTARVLGTLEGVGRGVRVAVAPVGRVWSAAGRSLSVAYAWAEERRRRVSPPEDAGVCRRTLLYDTDDDESFRWLAAQMLRTGWTVVRTTSQLGRGCGYLPVLVHRFSDESTLTAAARHVAGDADGSPVCAVVHNWDCAAEARHLLRGAPRSTSGQEPEAQGPRSSAEVICTAEVGEDLFQFVRWQLLSGATTEQVQKGLDELFGAFYEADEE 2234 FQVALAGGRG EA+QQAVA+GLE+PS S SG G GSAGGVVRLCGARGLEPALVA AGRGGYR P+LPVV+SGG F H S G S+ A L EGA +AVAK SPRPCYYRI DR+FC+EAW+PV S +A GA+ +D R VLV+EADA+SSD PQ LMSPP + G GRLGEDQA+WGL+MLRRA+EE+R + +GR+ASVLLAERR+ EGS VSIDARAALLLSVL WA Q G +DA++ DE T E A G + DTAAV + E+D G D T DD++Q ST RVL LE +GRGVRVA A +G+V SA GRSL AW + RR DA + +R L+YDT DDESFRWLAA+ML+ GWTV R TS+ R +PVLVH SDE TLTAAA HV A+G VCAVVHNWDC EAR LL A + E A + S EVICTAEVGEDLFQFVRWQLLSGATT+QVQ+GLD+LFGAFYE ++E Sbjct: 11 FQVALAGGRGMEAYQQAVADGLEVPSFSP--SGFGDGSAGGVVRLCGARGLEPALVAPVAGRGGYRTPILPVVVSGGGF-------RHRSGGWRSSDPAPCFLSEGALSAVAKVSPRPCYYRIGGDRVFCQEAWQPVVSALAEAGAT-SDSRERVLVMEADAVSSDAPQALMSPPREV----------EGGEGRLGEDQAVWGLAMLRRALEERRREQGAGRLASVLLAERRLVCAEGS--VSIDARAALLLSVLCWAGQCQ---GDDDALA---------------DEATTAAAVAGVLGTTEGSVAPGEESGA------DTAAVAEEEEDTMGVDG-----------------DATARADDDEQGRPASTAVRVLVVLERMGRGVRVAAARLGQVRSAMGRSLGAVSAWLAKNARRRPTTPDAAI-KRVLVYDTHDDESFRWLAAKMLKVGWTVERQTSERLRNEAGVPVLVHSCSDEKTLTAAAGHVVEGANGK-VCAVVHNWDCGVEARRLLVEARETVLPNEGRA-ARQPSVEVICTAEVGEDLFQFVRWQLLSGATTDQVQQGLDDLFGAFYETEQE 527
BLAST of mRNA_H-canaliculatus_F_contig1080.758.1 vs. uniprot
Match: A0A6H5K1Z0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K1Z0_9PHAE) HSP 1 Score: 213 bits (543), Expect = 1.630e-61 Identity = 108/123 (87.80%), Postives = 114/123 (92.68%), Query Frame = 3 Query: 132 MEWRDLEVWRRQRPFIGAELRKDAPDHLARLGLATSFVFVVGMAEGARVSAVKGDLKFPIRYAMYNAIPSFVGGKVPASSVASAMANAPPLRTCPRAAAHAANLRALRTAVAGYTVLSVVFQV 500 M WRD+EVWRRQRP++ AE+RKDAPDHLARLGLATSFVFVVGMAEGA VS VKGDLKFP RYA+YN IPSFVGGKVPASSVASAMA PP+R CPRAAAHAANLRALRTAVAGYTVLSVVFQV Sbjct: 1 MAWRDVEVWRRQRPYVNAEIRKDAPDHLARLGLATSFVFVVGMAEGATVSTVKGDLKFPTRYAIYNTIPSFVGGKVPASSVASAMATPPPVRACPRAAAHAANLRALRTAVAGYTVLSVVFQV 123
BLAST of mRNA_H-canaliculatus_F_contig1080.758.1 vs. uniprot
Match: A0A836CIR3_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CIR3_9STRA) HSP 1 Score: 65.1 bits (157), Expect = 4.580e-7 Identity = 64/175 (36.57%), Postives = 86/175 (49.14%), Query Frame = 3 Query: 213 LARLGLATSFVFVVGMAEGARVSAVKGDLKFPIRYAMYNAIPSFVGGKVPASSVASAM---ANAPPLRTCPRAAAHAANLRALRTAVAGYTVLSVVFQVALAGGRGTEAHQQAVAEGLEM--PSLSAASSGAGSGSAGGVVRLCGARGLEPALVAAAAGRGGYRAPVLPVVISGG 722 L LG A +F VG EGA +A +KF YA N +PSFVG K+ AS+VA+ + A L P AA A RA+RT VA +T +SVV ++A G + + V G + PS +SG VRLC + G A+ +GG LPV++SGG Sbjct: 11 LKALGSAAAFTLAVGTLEGACAAAPAARVKFAPAYAAANMLPSFVGQKISASTVAALLRMDAATALLAHTPNAALQMAVCRAVRTGVAAFTGVSVVLKMAQRAGCERDRQLELVRSGAALVNPSRFVDASGVQR------VRLCDSSGFARAVT-----QGG----ALPVLVSGG 170 The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig1080.758.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90) Total hits: 4
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-canaliculatus_F_contig1080.758.1 >prot_H-canaliculatus_F_contig1080.758.1 ID=prot_H-canaliculatus_F_contig1080.758.1|Name=mRNA_H-canaliculatus_F_contig1080.758.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=708bp MEWRDLEVWRRQRPFIGAELRKDAPDHLARLGLATSFVFVVGMAEGARVSback to top mRNA from alignment at H-canaliculatus_F_contig1080:17757..23255- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-canaliculatus_F_contig1080.758.1 ID=mRNA_H-canaliculatus_F_contig1080.758.1|Name=mRNA_H-canaliculatus_F_contig1080.758.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=5499bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1080:17757..23255- (Hapterophycus canaliculatus Oshoro5f female)back to top Coding sequence (CDS) from alignment at H-canaliculatus_F_contig1080:17757..23255- >mRNA_H-canaliculatus_F_contig1080.758.1 ID=mRNA_H-canaliculatus_F_contig1080.758.1|Name=mRNA_H-canaliculatus_F_contig1080.758.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=4248bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1080:17757..23255- (Hapterophycus canaliculatus Oshoro5f female)back to top |