mRNA_H-canaliculatus_F_contig1080.754.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig1080.754.1
Unique NamemRNA_H-canaliculatus_F_contig1080.754.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
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BLAST of mRNA_H-canaliculatus_F_contig1080.754.1 vs. uniprot
Match: A0A6H5JMD5_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JMD5_9PHAE)

HSP 1 Score: 168 bits (425), Expect = 6.530e-45
Identity = 83/101 (82.18%), Postives = 94/101 (93.07%), Query Frame = 3 
Query:  540 PLVRTDHEELAAAESFNWEMAELEALEHQEELRSLFQARITAVRQGSSGKQRPAKISSLNNAMFSGLPRGAPSSGLKGKRFNPAKKCPHNINQPLQTGRYY 842
            P+   DHEEL AAE+FN EMAELEALEHQEELRSL QARI+A++QG+SGKQRPAKI+S+N+AMFSGL RGAP+SGLKGKRFNPAKKCPHNINQPL+TGRYY
Sbjct:   68 PVSAADHEELTAAENFNREMAELEALEHQEELRSLLQARISALQQGTSGKQRPAKIASMNSAMFSGLSRGAPASGLKGKRFNPAKKCPHNINQPLETGRYY 168
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig1080.754.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5JMD5_9PHAE6.530e-4582.18Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig1080contigH-canaliculatus_F_contig1080:4834..8839 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-21_006490.1
Exons3
Model size2182
Cds size492
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig1080.754.1prot_H-canaliculatus_F_contig1080.754.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig1080 6171..8486 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928745.396265-UTR-H-canaliculatus_F_contig1080:4833..61701622928745.396265-UTR-H-canaliculatus_F_contig1080:4833..6170Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1080 4834..6170 -
1696845547.9208977-UTR-H-canaliculatus_F_contig1080:4833..61701696845547.9208977-UTR-H-canaliculatus_F_contig1080:4833..6170Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1080 4834..6170 -
1622928745.467413-UTR-H-canaliculatus_F_contig1080:8486..88391622928745.467413-UTR-H-canaliculatus_F_contig1080:8486..8839Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1080 8487..8839 -
1696845547.9637218-UTR-H-canaliculatus_F_contig1080:8486..88391696845547.9637218-UTR-H-canaliculatus_F_contig1080:8486..8839Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1080 8487..8839 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928745.4231486-CDS-H-canaliculatus_F_contig1080:6170..62451622928745.4231486-CDS-H-canaliculatus_F_contig1080:6170..6245Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1080 6171..6245 -
1696845547.9343796-CDS-H-canaliculatus_F_contig1080:6170..62451696845547.9343796-CDS-H-canaliculatus_F_contig1080:6170..6245Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1080 6171..6245 -
1622928745.438424-CDS-H-canaliculatus_F_contig1080:7361..74681622928745.438424-CDS-H-canaliculatus_F_contig1080:7361..7468Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1080 7362..7468 -
1696845547.9429214-CDS-H-canaliculatus_F_contig1080:7361..74681696845547.9429214-CDS-H-canaliculatus_F_contig1080:7361..7468Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1080 7362..7468 -
1622928745.4510925-CDS-H-canaliculatus_F_contig1080:8176..84861622928745.4510925-CDS-H-canaliculatus_F_contig1080:8176..8486Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1080 8177..8486 -
1696845547.9519224-CDS-H-canaliculatus_F_contig1080:8176..84861696845547.9519224-CDS-H-canaliculatus_F_contig1080:8176..8486Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1080 8177..8486 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig1080.754.1

>prot_H-canaliculatus_F_contig1080.754.1 ID=prot_H-canaliculatus_F_contig1080.754.1|Name=mRNA_H-canaliculatus_F_contig1080.754.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=164bp
MRGLPSNLHRSPSNQSHQLQAGTSSTRSLPLFFFWKIYEPKIWVLLFPPT
SDTSSALPTRPAPLVRTDHEELAAAESFNWEMAELEALEHQEELRSLFQA
RITAVRQGSSGKQRPAKISSLNNAMFSGLPRGAPSSGLKGKRFNPAKKCP
HNINQPLQTGRYY*
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mRNA from alignment at H-canaliculatus_F_contig1080:4834..8839-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig1080.754.1 ID=mRNA_H-canaliculatus_F_contig1080.754.1|Name=mRNA_H-canaliculatus_F_contig1080.754.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=4006bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1080:4834..8839- (Hapterophycus canaliculatus Oshoro5f female)
TGTGTGCGCGTGCTTGATTCCGACGAATACCGCAAGGAGTTCCTGGGCTT
CCACTTTGATCGGGAGGAAGTGTGCGACGAGGACCTGTGAGTGCGTAATC
TCTGTCGTTGCGCTGCATCGTTTATTGGTCCCTCGTGTGAGGCGAGCGTG
GCAGATTATCAGTCGGCGGAAACCTCTGAGCTGAACATTCCCGTCGTCTC
CCGTGTTCCTCTTTGTTCTCGCCGTCTCCTAAATGCAGCAGATCTGTACC
CCTAGGGAAACACGGCTGATCTTATTTGCTATGCTGTTTCTCTACTTCCC
GTCAAAACCAGGTTCAATCCGGCGGTGTATCCTGTCTCCGCAGCAGGTAA
GAAATGCGAGGCCTCCCGTCCAACCTCCATCGTTCCCCGAGTAATCAATC
GCATCAACTGCAAGCCGGTACTTCTAGCACTCGCTCTCTTCCTCTTTTTT
TTTTCTGGAAGATTTATGAACCGAAAATCTGGGTCCTGCTTTTTCCCCCC
ACCTCCGACACAAGCTCAGCACTCCCAACACGCCCCGCCCCTCTTGTGCG
TACAGATCACGAAGAGCTAGCGGCTGCTGAAAGCTTCAACTGGGAGATGG
CTGAGCTTGAGGCGCTCGAGCACCAAGAGGAGTTGCGCTCTCTTTTTCAA
GCTCGAATCACAGGTGAGGCCCCTGAAATGCGAAGCCAGCTGAGACCGCA
CGGGAAGATCCGCTGCTGTTCATGTCATGACGCGCAGCGTCGCGAGTCTT
TGCTCCGCGGGCGCCGTGCGCGCGCTCTCTCTCTCTCTCTCCCGCTGCGC
ACCTGTGCGTCTGAGTTCGATTGCGGGGGCTCGAGCCTTCGAGGTCTCGC
GAGATACAGGCTTGCTTGGCGTGTGAATCACGAACGGATCTTCGTCGCGG
ACAAATAAGATAACTTCGAAGTACAAGGTTGCAGACAACTAGCAAGCCTA
GCAGAGTGCCCTGGTGCGCGAAACCTCGGAACATTGAGACGTTGAGATAA
TCGCCCCCCGTCGATCCTGGGACACCGCCGCCAGCAAGTAGGATCGGTAG
ATTTCACCCATGTCTGTCTGCAAGTGCTTTGAGATGGGCCGGACTTCCTT
GGATTTCCCCCCTCATGCCGTTGCTGACACGGCAAAGTGGTTGTTCCGAT
GGTATGCACACTCAACATCCCGCTCCCCTGTTCTCTGCCCTCTGCTCCTC
CTGGCATGTTTTCGGCATTTGTTGTGCATATTCATTTGGTTCATGTTTTT
TTTTTTTTTGTGTCGTCGTTTTAAGTTTTGTTGGAAGACATGATGTCATG
TCCCAAAATTCAACGCAAAGCTTCTCCTTTCTCGTTTCATTGCGGTGTCT
GTCGAATGTTCGGTCATGCAGCTGTTCGGCAAGGGTCATCAGGCAAGCAG
CGCCCGGCCAAAATTTCTTCCTTGAACAACGCCATGTTCTCGGGATTGCC
CAGAGGCGCACCGTCGTCTGGATTGAAGGTGAGGTTCGATGAAAAATAAA
AAAACGGCGGCTGTACAACAATGATGCAGCGCTGATGGACTCCAACTACC
TGGTCCCTTCCCTTGTCGACTGGAATTTGTTCTTTTTCAGGATTTTTTCG
TTGTTGTTGCTCCGAGCAAAGTGCAACAAATGTCGAGATCATCTCTCAGA
CGAGGGTACAACGCTTTTGGTTTTGTCGACTCTTTGGTTAAAGAGTGAAT
TGTTTTAAGTTGTAGAAAGTGGCAGGCACAACAGCAGTGTTGCACGCAAA
CGCTGGGGACAATTCCAGAAACTGCAAAAAAGGAATCGCCCACGACGGCG
ACGAAAGACATGTGTGTGAAGATGAAGATTTCACCCTCCCGTCAATGCAA
GACCAAGAAATCGTCCGGAGTCCTCGCCAAAAAAAGGATCTTATCCGTGA
TGCCTACCGGGTACTTCGAAGTATTTTTTAATACTCCAGAGAACGAAGTA
GAAACAACTTTCCCTTAAAAGGCTATGGCGCTGTACCTGAGTGAAAAATT
CTATTACATGTACATCGTTCTTCGCACCTCATTCATGCGCGAGAGCGCGG
GCGCCAGCTATCGCGGCACTCCCATCAGGGGCCCGCTCCTGCTGTTTTGC
TTTTTTGTACTTGGATGTTATGGTACAAGCGAAAGCTTAAAGCCCTTCTA
CGGGGGAATGTATTCCGTAGGCGTAGATCAGAGGCGTGAAGAGGGGGTAC
TGAGACAAACCATTCGAGGACCTGGCGACCGCAACATCTCTGTTCGTACA
TTATTTTTACCGTTTGTGGGCCCGTTTCTACCTTACGGCATGTCTGAAGA
TGCCCATCAAGGGACATAGATCGCACAGTCGATCCATGGCAGCAGTTCTT
AGTCTAAGTATTACGCGAGGATGCCCTCACCTGGGATCGTTCGTTCCATT
TGCTCTACAACCAAGGACAACGTGTGGGTCCTTCTTTCAAGATCCTTCTT
GTTCAACCCCCTGTCTTTCAATTTAAAAAGCGAGTGGGAATTGAAGACAG
CCCCGCAGCTGAGAGTAATCGTTAATCCTTGGAAATCTCGTTTCGTTCAT
GCCATCGCGGTCCCCTGCTGTCGCGTGTTGCCCGTGCTGTACAGGGGAAA
CGCTTCAATCCTGCAAAGAAGTGCCCGCACAACATCAACCAGCCCCTCCA
AACAGGTCGCTACTACTAAGCTAGGTCAAGCGGATGAGGTCGGGGACGCT
AAGCATCCCAAGACATTTTCAGCCCGAGCCCCACCAATAGAAAACAAAAA
AAAGGCGCTGTATTTTACTCCACGGCGGTGTCGCTCGCCGGCTCTTTCGA
CGGGGGGGGGTGCTCCGTACACTTTTTGAAGTGATTTTCGCTGGTGTTCT
TCGCATCTCCTCCGTTTAGGTTTAGAAGATACGCTCCGCAGAGTTGGTGA
GAGTTTAGGCTGACTTGACAGGTGTGTAAACTCCACCTTCGTACGAAGTC
GCCACCTCCGTACCTCCCTTTGCTGCCCTTCTGTCAAAAATTAAGTACAG
GCCAGCTACACACATGATATGTTAGGCTGATGTTTTGTGGGTGCCACGTT
AGAAGGGAAACACATTCTCGATACTTGTAGTACGGCGGTGATGTGTGTAA
ATGGAAATAAATAGTAGGGACAAGCTCTAAGATCGACCGCTGCAAGAAGC
GGCCATGCCCATCACTGCATACGATACGAGGGTGTAGATGGGGTAAGGAG
TAATTTTGCTTTTATCGAAAGCGGGGCGGTGGCAGGCAGCAATGTACATT
TGAAAAAAAAAAAAAGGGGTGCGCCACTGTAGGACTTTCTTTCCATGAAG
GATCTGGTACGTGTAGCCGGACACGTGCCGGTTTCAGTACGAGTGGAAGT
CAAGCTTCGTGATGTTAGTGCAGAAAGTGGAGGCTGAGGGATGACAAGCC
GTTCACCGCCAAGTTGTATTTCAGAAACGGAGGGCACAATGTAATGGCCA
GCGTGGATGGACCGTGTACGGGTTTATATTTAGCCTGTCCGAAAGACGGG
GTGATATGATAACGTGTAGTGTAAATGCCAGACTGTTATTCCCCGGTAGA
TTTGGGGGTCAGCTAGATAGGACGTACCATGCGGTTGTTGTTGGCGTCGA
GGATTAGCGACTTGACCGTGCCAGCTTTTCTTATATTCCAGTTAGGGAAA
AGCCGTCATCTTTCTCCTTGTTGTGCCATCGGGCATTAATGCAGCATGGC
GTTTGGAGCTGAACAGCCCCTACGATGGTTGATAAGCTCAGGCACTGGTT
GAATTTCGTTTCCACCGCGACAAAAAGACAACAGGCATCAACAAAGATAA
TTAACAATGTGAAGCTGGTTATACTGTTCGCCGCTGCTCTGCTGTAGAGG
CGTATTCGTGCGAATGGAATTCGCGCCTCACGACTCTCCTCGCGGATGTA
CGCGTGGTCGTTCGCAGTGGCGGACGTCATGGGTGCCAACGGTTGTGCAC
ATTGTGGTGTGGTCGCTGTGGTAAGCGTGCTGCCTGAACGTGTCCTCAAC
AAAACC
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig1080:4834..8839-

>mRNA_H-canaliculatus_F_contig1080.754.1 ID=mRNA_H-canaliculatus_F_contig1080.754.1|Name=mRNA_H-canaliculatus_F_contig1080.754.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=984bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1080:4834..8839- (Hapterophycus canaliculatus Oshoro5f female)
ATGCGAGGCCTCCCGTCCAACCTCCATCGTTCCCCGAGTAATCAATCGCA
TCAACTGCAAGCCGGTACTTCTAGCACTCGCTCTCTTCCTCTTTTTTTTT
TCTGGAAGATTTATGAACCGAAAATCTGGGTCCTGCTTTTTCCCCCCACC
TCCGACACAAGCTCAGCACTCCCAACACGCCCCGCCCCTCTTGTGCGTAC
AGATCACGAAGAGCTAGCGGCTGCTGAAAGCTTCAACTGGGAGATGGCTG
AGCTTGAGGCGCTCGAGCACCAAGAGGAGTTGCGCTCTCTTTTTCAAGCT
CGAATCACAGATGCGAGGCCTCCCGTCCAACCTCCATCGTTCCCCGAGTA
ATCAATCGCATCAACTGCAAGCCGGTACTTCTAGCACTCGCTCTCTTCCT
CTTTTTTTTTTCTGGAAGATTTATGAACCGAAAATCTGGGTCCTGCTTTT
TCCCCCCACCTCCGACACAAGCTCAGCACTCCCAACACGCCCCGCCCCTC
TTGTGCGTACAGATCACGAAGAGCTAGCGGCTGCTGAAAGCTTCAACTGG
GAGATGGCTGAGCTTGAGGCGCTCGAGCACCAAGAGGAGTTGCGCTCTCT
TTTTCAAGCTCGAATCACAGCTGTTCGGCAAGGGTCATCAGGCAAGCAGC
GCCCGGCCAAAATTTCTTCCTTGAACAACGCCATGTTCTCGGGATTGCCC
AGAGGCGCACCGTCGTCTGGATTGAAGCTGTTCGGCAAGGGTCATCAGGC
AAGCAGCGCCCGGCCAAAATTTCTTCCTTGAACAACGCCATGTTCTCGGG
ATTGCCCAGAGGCGCACCGTCGTCTGGATTGAAGGGGAAACGCTTCAATC
CTGCAAAGAAGTGCCCGCACAACATCAACCAGCCCCTCCAAACAGGTCGC
TACTACTAAGGGAAACGCTTCAATCCTGCAAAGAAGTGCCCGCACAACAT
CAACCAGCCCCTCCAAACAGGTCGCTACTACTAA
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