mRNA_H-canaliculatus_F_contig1080.755.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig1080.755.1
Unique NamemRNA_H-canaliculatus_F_contig1080.755.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig1080.755.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig1080contigH-canaliculatus_F_contig1080:7595..8189 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size595
Cds size330
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig1080.755.1prot_H-canaliculatus_F_contig1080.755.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig1080 7633..7962 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928745.324027-UTR-H-canaliculatus_F_contig1080:7594..76321622928745.324027-UTR-H-canaliculatus_F_contig1080:7594..7632Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1080 7595..7632 +
1696845547.8908508-UTR-H-canaliculatus_F_contig1080:7594..76321696845547.8908508-UTR-H-canaliculatus_F_contig1080:7594..7632Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1080 7595..7632 +
1622928745.354343-UTR-H-canaliculatus_F_contig1080:7962..81891622928745.354343-UTR-H-canaliculatus_F_contig1080:7962..8189Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1080 7963..8189 +
1696845547.9086847-UTR-H-canaliculatus_F_contig1080:7962..81891696845547.9086847-UTR-H-canaliculatus_F_contig1080:7962..8189Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1080 7963..8189 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928745.338652-CDS-H-canaliculatus_F_contig1080:7632..79621622928745.338652-CDS-H-canaliculatus_F_contig1080:7632..7962Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1080 7633..7962 +
1696845547.8997657-CDS-H-canaliculatus_F_contig1080:7632..79621696845547.8997657-CDS-H-canaliculatus_F_contig1080:7632..7962Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1080 7633..7962 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig1080.755.1

>prot_H-canaliculatus_F_contig1080.755.1 ID=prot_H-canaliculatus_F_contig1080.755.1|Name=mRNA_H-canaliculatus_F_contig1080.755.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=110bp
MPGGAEGREQGSGMLSVHTIGTTTLPCQQRHEGGNPRKSGPSQSTCRQTW
VKSTDPTCWRRCPRIDGGRLSQRLNVPRFRAPGHSARLASCLQPCTSKLS
YLSATKIRS*
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mRNA from alignment at H-canaliculatus_F_contig1080:7595..8189+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig1080.755.1 ID=mRNA_H-canaliculatus_F_contig1080.755.1|Name=mRNA_H-canaliculatus_F_contig1080.755.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=595bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1080:7595..8189+ (Hapterophycus canaliculatus Oshoro5f female)
CATGAACCAAATGAATATGCACAACAAATGCCGAAAACATGCCAGGAGGA
GCAGAGGGCAGAGAACAGGGGAGCGGGATGTTGAGTGTGCATACCATCGG
AACAACCACTTTGCCGTGTCAGCAACGGCATGAGGGGGGAAATCCAAGGA
AGTCCGGCCCATCTCAAAGCACTTGCAGACAGACATGGGTGAAATCTACC
GATCCTACTTGCTGGCGGCGGTGTCCCAGGATCGACGGGGGGCGATTATC
TCAACGTCTCAATGTTCCGAGGTTTCGCGCACCAGGGCACTCTGCTAGGC
TTGCTAGTTGTCTGCAACCTTGTACTTCGAAGTTATCTTATTTGTCCGCG
ACGAAGATCCGTTCGTGATTCACACGCCAAGCAAGCCTGTATCTCGCGAG
ACCTCGAAGGCTCGAGCCCCCGCAATCGAACTCAGACGCACAGGTGCGCA
GCGGGAGAGAGAGAGAGAGAGCGCGCGCACGGCGCCCGCGGAGCAAAGAC
TCGCGACGCTGCGCGTCATGACATGAACAGCAGCGGATCTTCCCGTGCGG
TCTCAGCTGGCTTCGCATTTCAGGGGCCTCACCTGTGATTCGAGC
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig1080:7595..8189+

>mRNA_H-canaliculatus_F_contig1080.755.1 ID=mRNA_H-canaliculatus_F_contig1080.755.1|Name=mRNA_H-canaliculatus_F_contig1080.755.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=660bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1080:7595..8189+ (Hapterophycus canaliculatus Oshoro5f female)
ATGCCAGGAGGAGCAGAGGGCAGAGAACAGGGGAGCGGGATGTTGAGTGT
GCATACCATCGGAACAACCACTTTGCCGTGTCAGCAACGGCATGAGGGGG
GAAATCCAAGGAAGTCCGGCCCATCTCAAAGCACTTGCAGACAGACATGG
GTGAAATCTACCGATCCTACTTGCTGGCGGCGGTGTCCCAGGATCGACGG
GGGGCGATTATCTCAACGTCTCAATGTTCCGAGGTTTCGCGCACCAGGGC
ACTCTGCTAGGCTTGCTAGTTGTCTGCAACCTTGTACTTCGAAGTTATCT
TATTTGTCCGCGACGAAGATCCGTTCGTGAATGCCAGGAGGAGCAGAGGG
CAGAGAACAGGGGAGCGGGATGTTGAGTGTGCATACCATCGGAACAACCA
CTTTGCCGTGTCAGCAACGGCATGAGGGGGGAAATCCAAGGAAGTCCGGC
CCATCTCAAAGCACTTGCAGACAGACATGGGTGAAATCTACCGATCCTAC
TTGCTGGCGGCGGTGTCCCAGGATCGACGGGGGGCGATTATCTCAACGTC
TCAATGTTCCGAGGTTTCGCGCACCAGGGCACTCTGCTAGGCTTGCTAGT
TGTCTGCAACCTTGTACTTCGAAGTTATCTTATTTGTCCGCGACGAAGAT
CCGTTCGTGA
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