mRNA_H-canaliculatus_F_contig108.748.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig108.748.1
Unique NamemRNA_H-canaliculatus_F_contig108.748.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
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BLAST of mRNA_H-canaliculatus_F_contig108.748.1 vs. uniprot
Match: D8LP11_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LP11_ECTSI)

HSP 1 Score: 205 bits (521), Expect = 8.270e-57
Identity = 100/120 (83.33%), Postives = 109/120 (90.83%), Query Frame = 2 
Query: 1241 QILCEAPDAAVNYPCFHGGETPLMVACTQGHLTVAEYLVNEAKADVNAMNHRGDTALSLAAFWGRLDCLKLLLSVPGINTEIRNVQGKRAGEGMSELMRDESHDEETVRLLTESRVKQGM 1600
            +ILC APDAAVNYPCFHGGETPLM ACTQGHL V E+LV EA A+VNA NHRGDTALSLAAFWGRLDCLKLLLS+P  +TEI NVQGKRAGEGM ELMRDES+DEETVRLLTESRV++G+
Sbjct:  126 KILCGAPDAAVNYPCFHGGETPLMAACTQGHLAVTEFLVKEAGANVNATNHRGDTALSLAAFWGRLDCLKLLLSLPDTDTEILNVQGKRAGEGMQELMRDESNDEETVRLLTESRVRRGI 245
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BLAST of mRNA_H-canaliculatus_F_contig108.748.1 vs. uniprot
Match: W6UQU4_ECHGR (KN motif and ankyrin repeat domain-containing protein n=1 Tax=Echinococcus granulosus TaxID=6210 RepID=W6UQU4_ECHGR)

HSP 1 Score: 59.7 bits (143), Expect = 2.920e-5
Identity = 35/95 (36.84%), Postives = 56/95 (58.95%), Query Frame = 2 
Query: 1295 GETPLMVACTQGHLTVAEYLVNEAKADVNAMNHRGDTALSLAAFWGRLDCLKLLLSVPGINTEIRNVQGKRAGEGMSELMRDESHDEETVRLLTE 1579
            G+TPLM+A  + + TV E L+    ADVNA +  G+TAL  A   G LD +KLL++ P +N ++++ +G  A       + +   +EE +RL+ E
Sbjct: 1719 GQTPLMLAARKANTTVVELLLRHG-ADVNAQDDIGNTALMCAIDCGNLDMVKLLITRPELNVDLKDQEGSTASS-----IAEAGGNEEIIRLIRE 1807
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig108.748.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LP11_ECTSI8.270e-5783.33Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
W6UQU4_ECHGR2.920e-536.84KN motif and ankyrin repeat domain-containing prot... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig108contigH-canaliculatus_F_contig108:24697..29008 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score159.1
Seed ortholog evalue1.1e-36
Seed eggNOG ortholog2880.D8LP11
EggNOG free text desc.response to abiotic stimulus
EggNOG OGsCOG0666@1,KOG0504@2759
COG Functional cat.G
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionAnkyrin repeat-containing domain
Ec32 orthologEc-06_007010.1
Exons4
Model size2555
Cds size303
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig108.748.1prot_H-canaliculatus_F_contig108.748.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig108 26081..28065 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928744.2318683-UTR-H-canaliculatus_F_contig108:24696..250301622928744.2318683-UTR-H-canaliculatus_F_contig108:24696..25030Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig108 24697..25030 +
1696845547.461704-UTR-H-canaliculatus_F_contig108:24696..250301696845547.461704-UTR-H-canaliculatus_F_contig108:24696..25030Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig108 24697..25030 +
1622928744.2512696-UTR-H-canaliculatus_F_contig108:25105..260801622928744.2512696-UTR-H-canaliculatus_F_contig108:25105..26080Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig108 25106..26080 +
1696845547.4731576-UTR-H-canaliculatus_F_contig108:25105..260801696845547.4731576-UTR-H-canaliculatus_F_contig108:25105..26080Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig108 25106..26080 +
1622928744.3054094-UTR-H-canaliculatus_F_contig108:28065..290081622928744.3054094-UTR-H-canaliculatus_F_contig108:28065..29008Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig108 28066..29008 +
1696845547.5146806-UTR-H-canaliculatus_F_contig108:28065..290081696845547.5146806-UTR-H-canaliculatus_F_contig108:28065..29008Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig108 28066..29008 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928744.266609-CDS-H-canaliculatus_F_contig108:26080..261091622928744.266609-CDS-H-canaliculatus_F_contig108:26080..26109Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig108 26081..26109 +
1696845547.488025-CDS-H-canaliculatus_F_contig108:26080..261091696845547.488025-CDS-H-canaliculatus_F_contig108:26080..26109Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig108 26081..26109 +
1622928744.2809951-CDS-H-canaliculatus_F_contig108:26536..266331622928744.2809951-CDS-H-canaliculatus_F_contig108:26536..26633Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig108 26537..26633 +
1696845547.4975023-CDS-H-canaliculatus_F_contig108:26536..266331696845547.4975023-CDS-H-canaliculatus_F_contig108:26536..26633Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig108 26537..26633 +
1622928744.2946491-CDS-H-canaliculatus_F_contig108:27888..280651622928744.2946491-CDS-H-canaliculatus_F_contig108:27888..28065Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig108 27889..28065 +
1696845547.50602-CDS-H-canaliculatus_F_contig108:27888..280651696845547.50602-CDS-H-canaliculatus_F_contig108:27888..28065Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig108 27889..28065 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig108.748.1

>prot_H-canaliculatus_F_contig108.748.1 ID=prot_H-canaliculatus_F_contig108.748.1|Name=mRNA_H-canaliculatus_F_contig108.748.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=101bp
MVACTQGHLTVAEYLVNEAKADVNAMNHRGDTALSLAAFWGRLDCLKLLL
SVPGINTEIRNVQGKRAGEGMSELMRDESHDEETVRLLTESRVKQGMSAS
*
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mRNA from alignment at H-canaliculatus_F_contig108:24697..29008+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig108.748.1 ID=mRNA_H-canaliculatus_F_contig108.748.1|Name=mRNA_H-canaliculatus_F_contig108.748.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=4312bp|location=Sequence derived from alignment at H-canaliculatus_F_contig108:24697..29008+ (Hapterophycus canaliculatus Oshoro5f female)
GTCTCTTCATTTCGGATGTCATGGGCTACACGTGACCCATCGTCTCTCGC
CGCTCTCAGCCAGTTTTAGCCGTGGTCGAAAATTTGGTTCGTGGACTGCC
GCGAAGGAACGCTTGTTCGCATTATTTTCGTTCGTAGACTCCCCACCCGA
CGCGCGCATTTATGGACAACCACAAACAAAAACTTGATTGCCTGATCTAT
CAGCCGATCCATCACGTTCACCCTTCCGTCCGTTCATCCGAACATCCGTC
CTTGTCGCAGAAAAGAACTTGTTCGACTGCATTCGAGAAGAAGACTTGGA
AACCCTGAGGCGGTACGTTGACCGAGGGGGACCCGTCCATGTCGCGGACA
CTCTGGGCGACACTTCCCTCCTAGTCGCGGCGTCGACGGGAAACGTCGAG
GTCGTGAAGGTACGGGATGCTGTTCGTCCTTTCCATTTGCGTTGGCCGAT
TCAAAAATTATATTTCACAGATTTTTTTTCTGACGATTGCATTCGTTCTA
GGGCTTTGATGAACCCGAGTGCGTAGTCTGAGGATCTGAAGGCGGATACT
CCAATTTGAAGGGTTACGCCCTTGTCCCTCCTTCATACGAGCAATCAGTC
AAACAAGTGAACCAGACAAAGGTGGGACACCATAGAACAGGACGGGAACC
AAAGTACGCGGTAAAGGGTTAATTCAACCGAATGGGTGAATAGAAGCTAG
TCAGCACGCCAGGTCGAAGCCGTGCAACCGACGCTTTTTTCAAGGCTACC
TCAGCAAGCTCATTTCCCTTCTATTTTGCGCGCCTTGTTGAGTACTGATC
TACCTAATCGTGCGTTTCAACCATCGTCTGTTGCGTCATTTGGGTCTTGC
ATCTCTTGGAACGGTGTCCTGCCAGGGCGTCTGCGGGCTCCTTCGAGGGT
TGCTTGGTCACCTGCCGCGTACAGGGGTACCAAAGATATGGTCTTGCCCC
CACAAATCGAAAGTCACCAGCCCCTTCCCTTCCAACCCCGTGTCTCCACG
TTTCTATCTGTTTCTCTCTCTTTCAGGTGTGTTTAGCCGGCGGACATATC
CTCCTTCGTGTCTGCACCGAATGCCACACTTTCACGAGCAAGATCGGTTG
GGAATGAAATCCTTTGCGCCGGCAACTTGCCACGAAACAACTGCGATAGG
CGCTTGAAACGTTCGCGTCGTTGACTTTCAACGGCTCATCTTCCCTCGCG
AAGCGAAACCTCAAAGCCTCCCTGATCGATTAATAGCTGTTGATGAACCG
CGGTCGGTGCCCTGTTTCCCCGATTTTGTGCATTTTCCTCCGCCTCGTCT
GAATTTCCGTTTTTTCAGATCTTGTGCGAAGCTCCTGACGCGGCTGTGAA
CTATCCCTGCTTTCACGGGGGGGAGACCCCACTCATGGTTGCCTGCACGC
AGGGCCATCTTACGTGAGTCGCCCCTTCCCCTTTTCTGGCCACACCTTGA
ACAAGTATTTTTTTGTTGCGGTCAACCAAGTGGTGCGGGATCCGCGGCCA
CGTCCATGTACCCGCTCTGAACAGGCGTTCAAGTAGTTGAGAGTGTGAGA
CCCCTAGCCATGATGTGCGCGCAAGCAAACCTGGTGTGAGCAGCGTGTCT
CTCTCATGCGCGACCTTCACGTGTCTCTTACTCGTACGAGGTTGGACGTG
TAAGACGATGCACGGGACACTATTTCTCCAAAAGGAGATCTGTGGACCGC
AGCTCTCGGTGTTCCGCAGCTCTCGGTGTTCTAAACTACAACTGCTGTGT
TATCAAGCGCAGCCGCTGCCGCGGCGCGGCCACAGACCGTTGCTTCTTTC
GTATGAATCGGATGTCTTCCTTCGTGCCCGAATGCTACAGGGTGGCGGAA
TACCTCGTAAACGAGGCCAAAGCGGACGTGAACGCGATGAATCACCGAGG
CGATACGGCGTTAAGCTTGGCGGCGTTCTGGGGAAGGGTGAGACCGATCG
CTGCACGCGTAACCAGAAAGCCTTGTAGAAATTTTAGGTTGGACTTGTTC
ACAACCCACCCCTTCCCGTCTGCAACCTCGTCGTTCCCATATACCCGCTA
GTCTTTGCGCAAGAGCTAAAACTGCTCGAGCCTTTTTGGCTGTCCCGTGG
TCGCGAATCTTGTTATCTTTCTTAAAGAATAAGTCAACAACGACAAAGGA
ATACCCTTCGCTCAGACAAAAGGATTGCGACTCAGGAGCATTTTTATTGA
ATTCCTTGCCGTGAGGGTTCAGTATAGTGGAAAACGTTTTATGGTGTCAG
ACGAGACATTTTATGCGTGAAGGGAGAGACAGATGGCGGGCGGTCCTGTA
TACGGCGCATTTTGGTACTTCCTGTGATGAGGCGCCACGTCATCGTTTTT
TGTCCCCGTAGTTGGTAATCCACTCGTTTCGCAAGCTCATTGGTAGTGGC
CGAGCTGAAGAAGATGGCACCCAACAAGAGAAGCGATCAGCCCCCTGACG
TATAGCCTTCGTTGCAGTAAAAGTCGTACATCAGTTGGTGCAAAAGACTC
GAATTAGTACACACCTGAGGGCACACAAATACACGAACATGTGGTTTGGA
AAAGAGGTCTTTAACAAGAGCAGATGTAGAGAGAGACAGATTGCGCGCTT
CTCCAAAGCCTTCCCCAAAGGCCTCTCTTTCACTCCCCTTTTTCCTTCGA
AGATTCCAAAGAGAGCTTGATTCGACAAGAACGGTCGCCACCATAAATTT
GCCGGGCAGCGTAGTGCCCAATTTATCGGGGGATCGTATCGAACATGATC
TGTCTATTACTTGCGTTTTTTAAGATCACGCGCCGGCACTCTTCCTTCTG
GATGTTTGGGCCGCAATTGTGCCACACGCTCGTGGCCATCGTGGATTCGC
ATTGGCAAGACGAGACTGAAGATGATGTTTGTTCTTGACTCGCTTTCGAA
AAGTTTCTCGTAAGGCTCCGCCGACAGCAGAGATCACGTATCGCGCGGAG
AACAGCCCATCACGACGATCCGACAGTAATGGCAACAACAGCAGCAGCAG
CAGCAGCAGCAGCGGCACTGTGACCCCGTGCGCCTTTCGTTTCCCACCTT
TTCTGTCTTGTGCACGCGTGCCTACCCTGACGCGACGAAATGCGCTTTGG
AGGCGAGAAGGGAAATCTCTGGTGAAGCACCCGCACGCTTGCGCTGCTGT
CCCTCCTCCCTTTTTTGTTTTGGTTCTGTGTGCACCTCGCAGCTGGACTG
CCTCAAGCTGCTGCTGAGTGTCCCGGGCATCAACACAGAGATTCGCAACG
TGCAGGGGAAGCGAGCGGGGGAGGGTATGAGCGAGCTGATGCGGGACGAG
AGTCACGACGAGGAGACCGTCAGGCTCTTGACCGAAAGCCGCGTCAAGCA
GGGGATGTCGGCCTCGTAGAACGCACACAGCAGCAAGCCTCGCAGGAGCC
GAATTCGCTTCTCCCTTGCTTCCGTGCATTGGAACTCTTTGTTTTTCTTT
GCAGAGAGTCGCGCAAGGCCTGCTGAGCACAGACTGTGATATGGCAGGTA
CCTGGGCAGCGAGGTTCAGCCCGGCTTAAGTACATCATGGGTGAACGTGG
TATTGAGCTTTCTACAGCAGTAGTGCCGCTTTTATTACGAGCGATGTTGC
GTCAAAAAGCGAGACAGGGAGGGGGGAGGAAGAAAAGCGAGTGGGGGTAA
AATTTATCATTCTCCAACTACAAGTATCAAGGGGACGAGTGTTCGAGGTG
ACTGGGTAAATCGCAGTGTCACAAATGCCAATCGTTGTCACCTCAGCGCG
TGCCTTAGGCTTTAACTTCGGTTTTTGGTTTCTCCCCTCCCCCTCGTGCC
CGTGCGAAGGAGATACGCGTCAGGTCGGTCCTTCGTTGCCAACCACCTTG
CTTCAAGATACCTAAAGTCAAATGGAACTGCTCTAACGAGCGTATAGAGT
GCATGGAACGAATCCGAAGATATGATGTCGAGCAGCAGCGTTTTTTCGTG
AGACGAACAAAACACAGTTGTTGCCAGATCCCTACATAATTAGTCTCGAA
CACGGAAATTGGGTTGTGGAACAAAACAAGGCTACAGGCGTTTGCGAGCA
TATTTGGATGCATCATAACTTCAACCAGTAGAACATCCTTGTGTTCGGAA
AGCACGTGGTTGTGTAACTGGCAGGATGCACTGTTACGCCGTAAAGGAAA
AATCCACATGAAAAATGGGACCATATCTGGTACGTTTCTGACGAGCGTTT
CATCGCAAGCACGCAGGGATGTGAGGTTAAGGCGAGGTATATACGCGAGC
ATGCAGAGATGCGAGATCAGTTAGGGTAACAGGTTGAAACCAGCCCTCTC
TGTCGAGAACCA
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig108:24697..29008+

>mRNA_H-canaliculatus_F_contig108.748.1 ID=mRNA_H-canaliculatus_F_contig108.748.1|Name=mRNA_H-canaliculatus_F_contig108.748.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=606bp|location=Sequence derived from alignment at H-canaliculatus_F_contig108:24697..29008+ (Hapterophycus canaliculatus Oshoro5f female)
ATGGTTGCCTGCACGCAGGGCCATCTTACATGGTTGCCTGCACGCAGGGC
CATCTTACGGTGGCGGAATACCTCGTAAACGAGGCCAAAGCGGACGTGAA
CGCGATGAATCACCGAGGCGATACGGCGTTAAGCTTGGCGGCGTTCTGGG
GAAGGGGTGGCGGAATACCTCGTAAACGAGGCCAAAGCGGACGTGAACGC
GATGAATCACCGAGGCGATACGGCGTTAAGCTTGGCGGCGTTCTGGGGAA
GGCTGGACTGCCTCAAGCTGCTGCTGAGTGTCCCGGGCATCAACACAGAG
ATTCGCAACGTGCAGGGGAAGCGAGCGGGGGAGGGTATGAGCGAGCTGAT
GCGGGACGAGAGTCACGACGAGGAGACCGTCAGGCTCTTGACCGAAAGCC
GCGTCAAGCAGGGGATGTCGGCCTCGTAGCTGGACTGCCTCAAGCTGCTG
CTGAGTGTCCCGGGCATCAACACAGAGATTCGCAACGTGCAGGGGAAGCG
AGCGGGGGAGGGTATGAGCGAGCTGATGCGGGACGAGAGTCACGACGAGG
AGACCGTCAGGCTCTTGACCGAAAGCCGCGTCAAGCAGGGGATGTCGGCC
TCGTAG
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