mRNA_H-canaliculatus_F_contig10792.740.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig10792.740.1
Unique NamemRNA_H-canaliculatus_F_contig10792.740.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig10792.740.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig10792contigH-canaliculatus_F_contig10792:2932..3253 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size322
Cds size312
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928742.7523146-UTR-H-canaliculatus_F_contig10792:2931..29411622928742.7523146-UTR-H-canaliculatus_F_contig10792:2931..2941Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig10792 2932..2941 +
1696845546.8950868-UTR-H-canaliculatus_F_contig10792:2931..29411696845546.8950868-UTR-H-canaliculatus_F_contig10792:2931..2941Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig10792 2932..2941 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928742.774664-CDS-H-canaliculatus_F_contig10792:2941..32531622928742.774664-CDS-H-canaliculatus_F_contig10792:2941..3253Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10792 2942..3253 +
1696845546.9139338-CDS-H-canaliculatus_F_contig10792:2941..32531696845546.9139338-CDS-H-canaliculatus_F_contig10792:2941..3253Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10792 2942..3253 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig10792.740.1prot_H-canaliculatus_F_contig10792.740.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig10792 2942..3253 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig10792.740.1

>prot_H-canaliculatus_F_contig10792.740.1 ID=prot_H-canaliculatus_F_contig10792.740.1|Name=mRNA_H-canaliculatus_F_contig10792.740.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=104bp
MGPGCSRDHNVVSLPLFASKRPFCRRRRLFDRLPPCGHAECKGAPCSLFA
LRLVTEARVSCPMNILYTTKYDSCATRNTGVSKFIFLPLIFYHVSSSPYK
HFSS
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mRNA from alignment at H-canaliculatus_F_contig10792:2932..3253+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig10792.740.1 ID=mRNA_H-canaliculatus_F_contig10792.740.1|Name=mRNA_H-canaliculatus_F_contig10792.740.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=322bp|location=Sequence derived from alignment at H-canaliculatus_F_contig10792:2932..3253+ (Hapterophycus canaliculatus Oshoro5f female)
GGTCAGAGGGATGGGTCCTGGCTGCTCACGCGATCACAACGTCGTGAGCT
TGCCCTTGTTCGCATCAAAGAGGCCTTTCTGCCGTCGGCGTAGATTGTTT
GATCGGCTTCCACCGTGTGGTCATGCGGAGTGTAAGGGCGCTCCATGCTC
TCTGTTTGCTCTGCGTCTAGTAACAGAAGCTCGTGTGTCGTGTCCAATGA
ACATACTGTATACCACAAAATACGACTCGTGTGCAACTAGGAACACAGGC
GTCTCTAAATTCATCTTCCTTCCTCTCATTTTTTACCATGTTTCTTCATC
CCCGTACAAGCATTTCTCTTCC
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig10792:2932..3253+

>mRNA_H-canaliculatus_F_contig10792.740.1 ID=mRNA_H-canaliculatus_F_contig10792.740.1|Name=mRNA_H-canaliculatus_F_contig10792.740.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=624bp|location=Sequence derived from alignment at H-canaliculatus_F_contig10792:2932..3253+ (Hapterophycus canaliculatus Oshoro5f female)
ATGGGTCCTGGCTGCTCACGCGATCACAACGTCGTGAGCTTGCCCTTGTT
CGCATCAAAGAGGCCTTTCTGCCGTCGGCGTAGATTGTTTGATCGGCTTC
CACCGTGTGGTCATGCGGAGTGTAAGGGCGCTCCATGCTCTCTGTTTGCT
CTGCGTCTAGTAACAGAAGCTCGTGTGTCGTGTCCAATGAACATACTGTA
TACCACAAAATACGACTCGTGTGCAACTAGGAACACAGGCGTCTCTAAAT
TCATCTTCCTTCCTCTCATTTTTTACCATGTTTCTTCATCCCCGTACAAG
CATTTCTCTTCCATGGGTCCTGGCTGCTCACGCGATCACAACGTCGTGAG
CTTGCCCTTGTTCGCATCAAAGAGGCCTTTCTGCCGTCGGCGTAGATTGT
TTGATCGGCTTCCACCGTGTGGTCATGCGGAGTGTAAGGGCGCTCCATGC
TCTCTGTTTGCTCTGCGTCTAGTAACAGAAGCTCGTGTGTCGTGTCCAAT
GAACATACTGTATACCACAAAATACGACTCGTGTGCAACTAGGAACACAG
GCGTCTCTAAATTCATCTTCCTTCCTCTCATTTTTTACCATGTTTCTTCA
TCCCCGTACAAGCATTTCTCTTCC
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