mRNA_H-canaliculatus_F_contig10782.734.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig10782.734.1
Unique NamemRNA_H-canaliculatus_F_contig10782.734.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
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BLAST of mRNA_H-canaliculatus_F_contig10782.734.1 vs. uniprot
Match: D8LFA7_ECTSI (MtN3-like protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LFA7_ECTSI)

HSP 1 Score: 139 bits (351), Expect = 5.640e-38
Identity = 75/115 (65.22%), Postives = 89/115 (77.39%), Query Frame = 3 
Query:    6 VITFCLGGFNPVGER-PGMQDANSGDEG-DEGVQHFLGLAASAATTVQYASPLVELFNVMRRQSTEGMSLSLAAVSLVCSSLWLCYGVVVVNAFIYVPNVLGVCFSSAQVRRGLE 344
            V+TFCLG F+P  E    MQDA+S D G DE  Q FLG+AASAAT +QY +PL EL  V+RR+STEGMSL+LA VSLVCS+LW+ YGV++VNAFIYVPNVLGVCFS  Q    +E
Sbjct:  109 VVTFCLGTFSPRPESWVSMQDADSTDSGGDERAQRFLGIAASAATAIQYGAPLAELVKVIRRRSTEGMSLALAVVSLVCSTLWMSYGVMLVNAFIYVPNVLGVCFSVTQFHFHVE 223
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BLAST of mRNA_H-canaliculatus_F_contig10782.734.1 vs. uniprot
Match: A0A6H5KGY4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KGY4_9PHAE)

HSP 1 Score: 137 bits (346), Expect = 1.410e-37
Identity = 73/109 (66.97%), Postives = 85/109 (77.98%), Query Frame = 3 
Query:    6 VITFCLGGFNPVGER-PGMQDANSGDEG-DEGVQHFLGLAASAATTVQYASPLVELFNVMRRQSTEGMSLSLAAVSLVCSSLWLCYGVVVVNAFIYVPNVLGVCFSSAQ 326
            V+TFCLG F+P       MQD NS D G DE  Q FLG+AASAAT +QY +PL EL  V+RR+STEGMSL+LA VSLVCS+LW+ YGV++VNAFIYVPNVLGVCFS  Q
Sbjct:   66 VVTFCLGTFSPRSAPWVSMQDTNSTDSGGDERAQRFLGIAASAATAIQYGAPLAELVKVIRRRSTEGMSLALAVVSLVCSTLWMSYGVMLVNAFIYVPNVLGVCFSVTQ 174
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BLAST of mRNA_H-canaliculatus_F_contig10782.734.1 vs. uniprot
Match: A0A813J4A0_POLGL (Hypothetical protein n=1 Tax=Polarella glacialis TaxID=89957 RepID=A0A813J4A0_POLGL)

HSP 1 Score: 58.5 bits (140), Expect = 9.520e-8
Identity = 30/74 (40.54%), Postives = 44/74 (59.46%), Query Frame = 3 
Query:  108 LGLAASAATTVQYASPLVELFNVMRRQSTEGMSLSLAAVSLVCSSLWLCYGVVVVNAFIYVPNVLGVCFSSAQV 329
            LGL         +ASPL  +  V R +ST  +SL   A S+ CSSLW CYG++  +AF+++PN +G+  S  Q+
Sbjct:   15 LGLLGDLTAVCMFASPLASIKQVCRSRSTASLSLLATAASVCCSSLWGCYGLLQGDAFVWMPNFVGLLVSLFQL 88
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BLAST of mRNA_H-canaliculatus_F_contig10782.734.1 vs. uniprot
Match: A0A813JVL5_POLGL (Hypothetical protein n=2 Tax=Polarella glacialis TaxID=89957 RepID=A0A813JVL5_POLGL)

HSP 1 Score: 58.2 bits (139), Expect = 1.770e-6
Identity = 30/74 (40.54%), Postives = 44/74 (59.46%), Query Frame = 3 
Query:  108 LGLAASAATTVQYASPLVELFNVMRRQSTEGMSLSLAAVSLVCSSLWLCYGVVVVNAFIYVPNVLGVCFSSAQV 329
            LGL         +ASPL  +  V R +ST  +SL   A S+ CSSLW CYG++  +AF+++PN +G+  S  Q+
Sbjct: 1129 LGLLGDLTAVCMFASPLATIKQVCRSRSTASLSLLATAASVCCSSLWGCYGLLQGDAFVWMPNFVGLLVSLFQL 1202
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BLAST of mRNA_H-canaliculatus_F_contig10782.734.1 vs. uniprot
Match: A0A8B8DKK7_CRAVI (Sugar transporter SWEET1 n=2 Tax=Crassostrea TaxID=6564 RepID=A0A8B8DKK7_CRAVI)

HSP 1 Score: 56.6 bits (135), Expect = 1.950e-6
Identity = 23/78 (29.49%), Postives = 52/78 (66.67%), Query Frame = 3 
Query:   96 VQHFLGLAASAATTVQYASPLVELFNVMRRQSTEGMSLSLAAVSLVCSSLWLCYGVVVVNAFIYVPNVLGVCFSSAQV 329
            + + LG+      T+ +A+P +E+ + M++QS+  +S+S+    + C+++WL YG+++ + +IY PN++G+  S+ +V
Sbjct:  121 ILNMLGMFMFVVATITWATPAIEIRDCMQKQSSADISISMLIGGIACATMWLLYGLMLNDFYIYSPNIVGLATSAGKV 198
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BLAST of mRNA_H-canaliculatus_F_contig10782.734.1 vs. uniprot
Match: A0A087SZL1_STEMI (Sugar transporter SWEET1 (Fragment) n=3 Tax=Stegodyphus TaxID=175340 RepID=A0A087SZL1_STEMI)

HSP 1 Score: 55.5 bits (132), Expect = 5.350e-6
Identity = 26/77 (33.77%), Postives = 47/77 (61.04%), Query Frame = 3 
Query:   99 QHFLGLAASAATTVQYASPLVELFNVMRRQSTEGMSLSLAAVSLVCSSLWLCYGVVVVNAFIYVPNVLGVCFSSAQV 329
            Q   G+AA +A  +  ASPL  + +V+R ++ E +  ++   +   ++LWLCYG+++ + F+ VPN LG   S +Q+
Sbjct:  121 QQISGIAACSAGVIFMASPLATVAHVLRTKTVETLPFAMILSTFAMATLWLCYGILINDKFVQVPNFLGALLSLSQL 197
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BLAST of mRNA_H-canaliculatus_F_contig10782.734.1 vs. uniprot
Match: UPI000A2A5B30 (sugar transporter SWEET1 n=1 Tax=Exaiptasia diaphana TaxID=2652724 RepID=UPI000A2A5B30)

HSP 1 Score: 55.5 bits (132), Expect = 5.840e-6
Identity = 31/74 (41.89%), Postives = 44/74 (59.46%), Query Frame = 3 
Query:  108 LGLAASAATTVQYASPLVELFNVMRRQSTEGMSLSLAAVSLVCSSLWLCYGVVVVNAFIYVPNVLGVCFSSAQV 329
            LGL  S  +   Y SPLV L  V++++STE ++ SL   + V S  W  YG +V +A+I +PN LGV  S  Q+
Sbjct:  125 LGLICSGFSVAVYGSPLVSLAQVVKQKSTEYLTFSLCLANFVVSLQWFMYGHLVQDAYIKLPNALGVLLSVIQL 198
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BLAST of mRNA_H-canaliculatus_F_contig10782.734.1 vs. uniprot
Match: UPI000C813EB1 (sugar transporter SWEET1 isoform X4 n=1 Tax=Loxodonta africana TaxID=9785 RepID=UPI000C813EB1)

HSP 1 Score: 54.3 bits (129), Expect = 6.920e-6
Identity = 33/87 (37.93%), Postives = 51/87 (58.62%), Query Frame = 3 
Query:  102 HFLGLAASAATTVQYASPLVELFNVMRRQSTEGMSLSLAAVSLVCSSLWLCYGVVVVNAFIYVPNVLGVCFSSAQV---RRGLEERD 353
            H LGL  S  T   Y SPL +L NV++ QST+ +S SL   +L+ S+ W  YG  + + +I VPN+ G+  S  ++   R+  +E+D
Sbjct:   68 HQLGLFCSVFTISMYFSPLADLANVIKTQSTQRLSYSLTIATLLSSASWTLYGFRLRDLYIMVPNLPGIFTSLIRLWLFRKYPQEKD 154
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BLAST of mRNA_H-canaliculatus_F_contig10782.734.1 vs. uniprot
Match: UPI001BB1F18B (sugar transporter SWEET1-like n=1 Tax=Lytechinus variegatus TaxID=7654 RepID=UPI001BB1F18B)

HSP 1 Score: 54.7 bits (130), Expect = 7.310e-6
Identity = 26/74 (35.14%), Postives = 50/74 (67.57%), Query Frame = 3 
Query:  108 LGLAASAATTVQYASPLVELFNVMRRQSTEGMSLSLAAVSLVCSSLWLCYGVVVVNAFIYVPNVLGVCFSSAQV 329
            +GL AS  T + + +P+ ++ + +R +S + +S SL+  +L+ SSLWL YG+++ + FI +PN+ GV  S +++
Sbjct:   74 VGLVASIVTILMFVAPVCDMVHCIRAKSAKTISASLSIATLISSSLWLSYGILLHDTFISLPNIPGVLSSISRL 147
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BLAST of mRNA_H-canaliculatus_F_contig10782.734.1 vs. uniprot
Match: G3SLA7_LOXAF (Sugar transporter SWEET n=5 Tax=Afrotheria TaxID=311790 RepID=G3SLA7_LOXAF)

HSP 1 Score: 54.3 bits (129), Expect = 1.450e-5
Identity = 33/87 (37.93%), Postives = 51/87 (58.62%), Query Frame = 3 
Query:  102 HFLGLAASAATTVQYASPLVELFNVMRRQSTEGMSLSLAAVSLVCSSLWLCYGVVVVNAFIYVPNVLGVCFSSAQV---RRGLEERD 353
            H LGL  S  T   Y SPL +L NV++ QST+ +S SL   +L+ S+ W  YG  + + +I VPN+ G+  S  ++   R+  +E+D
Sbjct:  127 HQLGLFCSVFTISMYFSPLADLANVIKTQSTQRLSYSLTIATLLSSASWTLYGFRLRDLYIMVPNLPGIFTSLIRLWLFRKYPQEKD 213
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig10782.734.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 12
Match NameE-valueIdentityDescription
D8LFA7_ECTSI5.640e-3865.22MtN3-like protein n=1 Tax=Ectocarpus siliculosus T... [more]
A0A6H5KGY4_9PHAE1.410e-3766.97Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A813J4A0_POLGL9.520e-840.54Hypothetical protein n=1 Tax=Polarella glacialis T... [more]
A0A813JVL5_POLGL1.770e-640.54Hypothetical protein n=2 Tax=Polarella glacialis T... [more]
A0A8B8DKK7_CRAVI1.950e-629.49Sugar transporter SWEET1 n=2 Tax=Crassostrea TaxID... [more]
A0A087SZL1_STEMI5.350e-633.77Sugar transporter SWEET1 (Fragment) n=3 Tax=Stegod... [more]
UPI000A2A5B305.840e-641.89sugar transporter SWEET1 n=1 Tax=Exaiptasia diapha... [more]
UPI000C813EB16.920e-637.93sugar transporter SWEET1 isoform X4 n=1 Tax=Loxodo... [more]
UPI001BB1F18B7.310e-635.14sugar transporter SWEET1-like n=1 Tax=Lytechinus v... [more]
G3SLA7_LOXAF1.450e-537.93Sugar transporter SWEET n=5 Tax=Afrotheria TaxID=3... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig10782contigH-canaliculatus_F_contig10782:344..1792 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score125.2
Seed ortholog evalue1.8e-26
Seed eggNOG ortholog2880.D8LFA7
Preferred nameswt-4
KEGG koko:K15382
KEGG TC9.A.58.1
GOsGO:0002376,GO:0003674,GO:0005215,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005794,GO:0005886,GO:0006810,GO:0006950,GO:0006952,GO:0006955,GO:0008150,GO:0008643,GO:0009605,GO:0009607,GO:0009617,GO:0012505,GO:0015144,GO:0016020,GO:0016021,GO:0022857,GO:0031224,GO:0034219,GO:0042742,GO:0043207,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044424,GO:0044425,GO:0044444,GO:0044464,GO:0045087,GO:0050829,GO:0050896,GO:0051119,GO:0051179,GO:0051234,GO:0051704,GO:0051707,GO:0055085,GO:0071702,GO:0071944,GO:0098542
EggNOG free text desc.sugar transmembrane transporter activity
EggNOG OGsKOG1623@1,KOG1623@2759
COG Functional cat.U
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko02000
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionMtN3-like protein
Ec32 orthologEc-01_004270.1
Exons2
Model size591
Cds size300
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig10782.734.1prot_H-canaliculatus_F_contig10782.734.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig10782 400..1557 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928741.7259219-UTR-H-canaliculatus_F_contig10782:343..3991622928741.7259219-UTR-H-canaliculatus_F_contig10782:343..399Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig10782 344..399 +
1696845546.6631248-UTR-H-canaliculatus_F_contig10782:343..3991696845546.6631248-UTR-H-canaliculatus_F_contig10782:343..399Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig10782 344..399 +
1622928741.8439977-UTR-H-canaliculatus_F_contig10782:1557..17921622928741.8439977-UTR-H-canaliculatus_F_contig10782:1557..1792Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig10782 1558..1792 +
1696845546.7077985-UTR-H-canaliculatus_F_contig10782:1557..17921696845546.7077985-UTR-H-canaliculatus_F_contig10782:1557..1792Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig10782 1558..1792 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928741.8085227-CDS-H-canaliculatus_F_contig10782:399..5161622928741.8085227-CDS-H-canaliculatus_F_contig10782:399..516Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10782 400..516 +
1696845546.682959-CDS-H-canaliculatus_F_contig10782:399..5161696845546.682959-CDS-H-canaliculatus_F_contig10782:399..516Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10782 400..516 +
1622928741.8254662-CDS-H-canaliculatus_F_contig10782:1374..15571622928741.8254662-CDS-H-canaliculatus_F_contig10782:1374..1557Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10782 1375..1557 +
1696845546.6941347-CDS-H-canaliculatus_F_contig10782:1374..15571696845546.6941347-CDS-H-canaliculatus_F_contig10782:1374..1557Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10782 1375..1557 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig10782.734.1

>prot_H-canaliculatus_F_contig10782.734.1 ID=prot_H-canaliculatus_F_contig10782.734.1|Name=mRNA_H-canaliculatus_F_contig10782.734.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=100bp
MQDANSGDEGDEGVQHFLGLAASAATTVQYASPLVELFNVMRRQSTEGMS
LSLAAVSLVCSSLWLCYGVVVVNAFIYVPNVLGVCFSSAQVRRGLEERD*
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mRNA from alignment at H-canaliculatus_F_contig10782:344..1792+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig10782.734.1 ID=mRNA_H-canaliculatus_F_contig10782.734.1|Name=mRNA_H-canaliculatus_F_contig10782.734.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=1449bp|location=Sequence derived from alignment at H-canaliculatus_F_contig10782:344..1792+ (Hapterophycus canaliculatus Oshoro5f female)
GCTCGGTGATCACGTTCTGTCTCGGGGGCTTCAATCCGGTCGGGGAGCGC
CCTGGGATGCAAGACGCCAACAGCGGGGACGAGGGAGATGAAGGAGTGCA
GCATTTCTTGGGGCTAGCGGCGTCGGCGGCGACGACGGTCCAGTACGCCT
CCCCTCTGGTTGAGCTGTTCAATGTGAGGCTGCAGTTTTTCAGAGAGACG
GAACATGAATCGGCAGCTGCGGAAGGAGCAAGATCGTAGACGGGGCCCGT
TTTTTTTATTTCGTGGCGCGCGCGCCGTGCGTTTCTACGCGGTGCGATGT
GGCGTCATGCGTTGTGAAACGCGCTGCAGGTTATCGCTAGATGTTGGTCG
TTCGCCCAGCGATCGGGGATCGAGTCGACAGCCTGATGAGCCGGGCGACT
GTCGTGAGCGAACCAGCGAATACGGGGGAGCCCGCTGTGCGAGCACCCAC
GGGCTCCCCCCGTTTAGCGAGGGGAAGGGGGGGATAGACGAAACAGATTG
AGACACTTTTGGTTGATTTTTCCTTCGAAATGGCGTTAAAAGTTGCCACC
ACACTCGGCTGTGTCTGGCCGATCTTGATGCCTTTTTTGTGGGGAAGAAA
AAACATTTGTAAGAAGGTTGAGGAATGGCTGGAAGCTGGCCATTGCCTGT
CGTGCTGTGTGGATGTGTCCCTACGTTCCTTTTGAGGGGTGCGGTGGGTT
CTTTTTCATGCCTTGGGCGGGCCACGTGGCGGCAAGTTTCTAGACAAGTA
TCGTGTCATGTCGAGAAATCGAATTCCCGTCGGCATTCGAGGGGCACGAT
ACTTTCGTGCGATGCATCGGAAACCATTGATACGACGTCCGACACTGCCA
CAAAGGCATGGAAGCCCTGGCGACCCCGACGCGGTCCACCTGCGAGTTCA
CCGGAGTTATGCAGATTTGTCGCGTTGGTTCATTTGCGGGGAAACCTCCG
GGAGAAAGACGGTGTCAACCCCTCTGTCGACGGTGGCAACAGCAGCAATC
TTGGTGTTTCTTTCCTGCCATCTTGCGTCAGGTTATGAGGCGGCAGTCCA
CGGAGGGAATGTCCTTGTCGCTGGCGGCGGTGTCGCTGGTGTGCTCGTCG
CTGTGGCTATGTTACGGCGTCGTCGTCGTCAACGCCTTCATCTACGTGCC
CAATGTGCTGGGGGTGTGCTTCAGCAGTGCCCAGGTACGTCGCGGCCTAG
AGGAGAGAGATTGAAGAACTCACGTGCGTACTGCTGTACTGTTGTACAAC
ATTGTGGCAGCGAGTAAGAGGGCCTTTTCGAGGTGACAATGGATCATTTT
GGTCTCCTGGATACCTCTTTCGGGGTTCCGCTGGAGTTGAGCGGTGGGCA
AGGCAAGCAAGCCCGGCAAAAACGACGTTCCCCGGGAGGTCTCCCTGCGA
TGTTGTTTAGTTTTTCTTTTTTTAAATAAGCTATTTTTATCTTCGAGTA
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig10782:344..1792+

>mRNA_H-canaliculatus_F_contig10782.734.1 ID=mRNA_H-canaliculatus_F_contig10782.734.1|Name=mRNA_H-canaliculatus_F_contig10782.734.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=600bp|location=Sequence derived from alignment at H-canaliculatus_F_contig10782:344..1792+ (Hapterophycus canaliculatus Oshoro5f female)
ATGCAAGACGCCAACAGCGGGGACGAGGGAGATGAAGGAGTGCAGCATTT
CTTGGGGCTAGCGGCGTCGGCGGCGACGACGGTCCAGTACGCCTCCCCTC
TGGTTGAGCTGTTCAATATGCAAGACGCCAACAGCGGGGACGAGGGAGAT
GAAGGAGTGCAGCATTTCTTGGGGCTAGCGGCGTCGGCGGCGACGACGGT
CCAGTACGCCTCCCCTCTGGTTGAGCTGTTCAATGTTATGAGGCGGCAGT
CCACGGAGGGAATGTCCTTGTCGCTGGCGGCGGTGTCGCTGGTGTGCTCG
TCGCTGTGGCTATGTTACGGCGTCGTCGTCGTCAACGCCTTCATCTACGT
GCCCAATGTGCTGGGGGTGTGCTTCAGCAGTGCCCAGGTACGTCGCGGCC
TAGAGGAGAGAGATTGAGTTATGAGGCGGCAGTCCACGGAGGGAATGTCC
TTGTCGCTGGCGGCGGTGTCGCTGGTGTGCTCGTCGCTGTGGCTATGTTA
CGGCGTCGTCGTCGTCAACGCCTTCATCTACGTGCCCAATGTGCTGGGGG
TGTGCTTCAGCAGTGCCCAGGTACGTCGCGGCCTAGAGGAGAGAGATTGA
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