mRNA_H-canaliculatus_F_contig10779.730.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig10779.730.1
Unique NamemRNA_H-canaliculatus_F_contig10779.730.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig10779.730.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig10779contigH-canaliculatus_F_contig10779:1670..2251 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size555
Cds size453
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig10779.730.1prot_H-canaliculatus_F_contig10779.730.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig10779 1673..2152 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928740.9719658-UTR-H-canaliculatus_F_contig10779:1669..16721622928740.9719658-UTR-H-canaliculatus_F_contig10779:1669..1672Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig10779 1670..1672 +
1696845546.3038502-UTR-H-canaliculatus_F_contig10779:1669..16721696845546.3038502-UTR-H-canaliculatus_F_contig10779:1669..1672Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig10779 1670..1672 +
1622928741.0130222-UTR-H-canaliculatus_F_contig10779:2152..22511622928741.0130222-UTR-H-canaliculatus_F_contig10779:2152..2251Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig10779 2153..2251 +
1696845546.34661-UTR-H-canaliculatus_F_contig10779:2152..22511696845546.34661-UTR-H-canaliculatus_F_contig10779:2152..2251Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig10779 2153..2251 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928740.9828234-CDS-H-canaliculatus_F_contig10779:1672..19601622928740.9828234-CDS-H-canaliculatus_F_contig10779:1672..1960Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10779 1673..1960 +
1696845546.3143992-CDS-H-canaliculatus_F_contig10779:1672..19601696845546.3143992-CDS-H-canaliculatus_F_contig10779:1672..1960Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10779 1673..1960 +
1622928740.9980314-CDS-H-canaliculatus_F_contig10779:1987..21521622928740.9980314-CDS-H-canaliculatus_F_contig10779:1987..2152Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10779 1988..2152 +
1696845546.3334801-CDS-H-canaliculatus_F_contig10779:1987..21521696845546.3334801-CDS-H-canaliculatus_F_contig10779:1987..2152Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10779 1988..2152 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig10779.730.1

>prot_H-canaliculatus_F_contig10779.730.1 ID=prot_H-canaliculatus_F_contig10779.730.1|Name=mRNA_H-canaliculatus_F_contig10779.730.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=151bp
MASIGKSASEAPPPSDGNAFRVGVFWVFGCLGVAWGGCEGPLHVIEQEHP
ERVRAGSCVPLGAGTEHDRLLCCREAHRAENAGAGVCLCVCVFVSCVCDM
SARGPALEAYPGLLRCCSVRAALFSRRRMVDGRTWSGMGAFIIETNKCWT
*
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mRNA from alignment at H-canaliculatus_F_contig10779:1670..2251+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig10779.730.1 ID=mRNA_H-canaliculatus_F_contig10779.730.1|Name=mRNA_H-canaliculatus_F_contig10779.730.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=582bp|location=Sequence derived from alignment at H-canaliculatus_F_contig10779:1670..2251+ (Hapterophycus canaliculatus Oshoro5f female)
GGCATGGCAAGCATCGGGAAGTCCGCGTCAGAAGCCCCTCCCCCCTCCGA
TGGCAACGCCTTCAGGGTTGGGGTGTTTTGGGTGTTTGGATGTCTTGGAG
TTGCCTGGGGGGGGTGTGAGGGACCGCTTCATGTGATCGAGCAAGAGCAT
CCCGAACGCGTGCGTGCTGGTTCATGCGTACCCCTTGGTGCTGGCACAGA
GCATGATCGTTTATTGTGTTGCCGGGAGGCTCATCGAGCGGAGAACGCTG
GTGCAGGTGTGTGTTTGTGTGTTTGTGTGTTTGTGTCGTGTGTGTGTTTG
TGTTTTTGTTTTTCTGTCGTGTGCGACATGTCAGCAAGAGGGCCAGCGTT
AGAAGCCTATCCTGGTCTCCTCCGATGCTGTAGCGTAAGGGCTGCTCTCT
TCTCCCGAAGACGGATGGTGGACGGGCGGACCTGGTCTGGAATGGGGGCG
TTCATCATCGAGACGAATAAATGTTGGACGTGAAAAGAGAATCGGAGATT
CCGAGATACTCCGTGTGTTGCGTTGACGCTGCACGTAGATACGAGACGAA
GCAGGACCGCGGTGGAAACGGGATGCAGGCAC
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig10779:1670..2251+

>mRNA_H-canaliculatus_F_contig10779.730.1 ID=mRNA_H-canaliculatus_F_contig10779.730.1|Name=mRNA_H-canaliculatus_F_contig10779.730.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=906bp|location=Sequence derived from alignment at H-canaliculatus_F_contig10779:1670..2251+ (Hapterophycus canaliculatus Oshoro5f female)
ATGGCAAGCATCGGGAAGTCCGCGTCAGAAGCCCCTCCCCCCTCCGATGG
CAACGCCTTCAGGGTTGGGGTGTTTTGGGTGTTTGGATGTCTTGGAGTTG
CCTGGGGGGGGTGTGAGGGACCGCTTCATGTGATCGAGCAAGAGCATCCC
GAACGCGTGCGTGCTGGTTCATGCGTACCCCTTGGTGCTGGCACAGAGCA
TGATCGTTTATTGTGTTGCCGGGAGGCTCATCGAGCGGAGAACGCTGGTG
CAGGTGTGTGTTTGTGTGTTTGTGTGTTTGTGTCGTGTATGGCAAGCATC
GGGAAGTCCGCGTCAGAAGCCCCTCCCCCCTCCGATGGCAACGCCTTCAG
GGTTGGGGTGTTTTGGGTGTTTGGATGTCTTGGAGTTGCCTGGGGGGGGT
GTGAGGGACCGCTTCATGTGATCGAGCAAGAGCATCCCGAACGCGTGCGT
GCTGGTTCATGCGTACCCCTTGGTGCTGGCACAGAGCATGATCGTTTATT
GTGTTGCCGGGAGGCTCATCGAGCGGAGAACGCTGGTGCAGGTGTGTGTT
TGTGTGTTTGTGTGTTTGTGTCGTGTGTGTGCGACATGTCAGCAAGAGGG
CCAGCGTTAGAAGCCTATCCTGGTCTCCTCCGATGCTGTAGCGTAAGGGC
TGCTCTCTTCTCCCGAAGACGGATGGTGGACGGGCGGACCTGGTCTGGAA
TGGGGGCGTTCATCATCGAGACGAATAAATGTTGGACGTGAGTGTGCGAC
ATGTCAGCAAGAGGGCCAGCGTTAGAAGCCTATCCTGGTCTCCTCCGATG
CTGTAGCGTAAGGGCTGCTCTCTTCTCCCGAAGACGGATGGTGGACGGGC
GGACCTGGTCTGGAATGGGGGCGTTCATCATCGAGACGAATAAATGTTGG
ACGTGA
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