mRNA_H-canaliculatus_F_contig10772.727.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig10772.727.1
Unique NamemRNA_H-canaliculatus_F_contig10772.727.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
[Close]
BLAST of mRNA_H-canaliculatus_F_contig10772.727.1 vs. uniprot
Match: A0A6H5LD66_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LD66_9PHAE)

HSP 1 Score: 92.0 bits (227), Expect = 5.660e-21
Identity = 43/45 (95.56%), Postives = 44/45 (97.78%), Query Frame = 1 
Query:    1 NANMMSLLGLSTKWRELVGKAKAKQLKPDEYTGGTFTITNLGMFG 135
            NANMMSLLGLS KWR+LVGKAKAKQLKPDEYTGGTFTITNLGMFG
Sbjct:  243 NANMMSLLGLSNKWRDLVGKAKAKQLKPDEYTGGTFTITNLGMFG 287
[Close]
BLAST of mRNA_H-canaliculatus_F_contig10772.727.1 vs. uniprot
Match: A0A836C7H2_9STRA (Dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C7H2_9STRA)

HSP 1 Score: 70.1 bits (170), Expect = 7.070e-13
Identity = 32/44 (72.73%), Postives = 36/44 (81.82%), Query Frame = 1 
Query:    4 ANMMSLLGLSTKWRELVGKAKAKQLKPDEYTGGTFTITNLGMFG 135
            AN MS+L LS  W++LVGKAKAK LKPDEY  GTF I+NLGMFG
Sbjct:  486 ANEMSILALSAAWKDLVGKAKAKSLKPDEYNSGTFYISNLGMFG 529
[Close]
BLAST of mRNA_H-canaliculatus_F_contig10772.727.1 vs. uniprot
Match: K8YSL5_NANGC (Pyruvate dehydrogenase E2 component (Dihydrolipoamide acetyltransferase) (Fragment) n=1 Tax=Nannochloropsis gaditana (strain CCMP526) TaxID=1093141 RepID=K8YSL5_NANGC)

HSP 1 Score: 67.4 bits (163), Expect = 5.880e-12
Identity = 31/45 (68.89%), Postives = 36/45 (80.00%), Query Frame = 1 
Query:    1 NANMMSLLGLSTKWRELVGKAKAKQLKPDEYTGGTFTITNLGMFG 135
            NAN M L+ L  KWRELV KA+ K+L PDEYT GTFTI+NLGM+G
Sbjct:  262 NANAMDLVSLGGKWRELVKKAQEKRLAPDEYTTGTFTISNLGMYG 306
[Close]
BLAST of mRNA_H-canaliculatus_F_contig10772.727.1 vs. uniprot
Match: W7TSZ8_9STRA (Dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TSZ8_9STRA)

HSP 1 Score: 67.4 bits (163), Expect = 6.280e-12
Identity = 31/45 (68.89%), Postives = 36/45 (80.00%), Query Frame = 1 
Query:    1 NANMMSLLGLSTKWRELVGKAKAKQLKPDEYTGGTFTITNLGMFG 135
            NAN M L+ L  KWRELV KA+ K+L PDEYT GTFTI+NLGM+G
Sbjct:  627 NANAMDLVSLGGKWRELVKKAQEKRLAPDEYTTGTFTISNLGMYG 671
[Close]
BLAST of mRNA_H-canaliculatus_F_contig10772.727.1 vs. uniprot
Match: L1JKQ4_GUITC (Dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex n=2 Tax=Guillardia theta TaxID=55529 RepID=L1JKQ4_GUITC)

HSP 1 Score: 67.4 bits (163), Expect = 6.280e-12
Identity = 30/45 (66.67%), Postives = 38/45 (84.44%), Query Frame = 1 
Query:    1 NANMMSLLGLSTKWRELVGKAKAKQLKPDEYTGGTFTITNLGMFG 135
            NANMM +  LS +W+ELVGKAK+ +L+PDE+  GTFTI+NLGMFG
Sbjct:  374 NANMMDIETLSGQWKELVGKAKSGKLRPDEFQSGTFTISNLGMFG 418
[Close]
BLAST of mRNA_H-canaliculatus_F_contig10772.727.1 vs. uniprot
Match: A0A838VUM2_9NOST (2-oxo acid dehydrogenase subunit E2 n=1 Tax=Nostocaceae cyanobacterium TaxID=2723028 RepID=A0A838VUM2_9NOST)

HSP 1 Score: 66.2 bits (160), Expect = 6.640e-12
Identity = 28/45 (62.22%), Postives = 37/45 (82.22%), Query Frame = 1 
Query:    1 NANMMSLLGLSTKWRELVGKAKAKQLKPDEYTGGTFTITNLGMFG 135
            NA+++ +  LS  W+ LV +AKAKQL+PDEYT GTFT++NLGMFG
Sbjct:  119 NADLVDIYSLSRNWKSLVERAKAKQLQPDEYTSGTFTLSNLGMFG 163
[Close]
BLAST of mRNA_H-canaliculatus_F_contig10772.727.1 vs. uniprot
Match: K7P4G4_PINMU (2-oxoacid_dh domain-containing protein (Fragment) n=11 Tax=Pinaceae TaxID=3318 RepID=K7P4G4_PINMU)

HSP 1 Score: 62.8 bits (151), Expect = 8.080e-12
Identity = 28/45 (62.22%), Postives = 36/45 (80.00%), Query Frame = 1 
Query:    1 NANMMSLLGLSTKWRELVGKAKAKQLKPDEYTGGTFTITNLGMFG 135
            +A+ M L  LS +W+ELV KA+AKQL+P EY  GTFT++NLGMFG
Sbjct:   13 DADKMDLYLLSQRWKELVDKARAKQLQPQEYNSGTFTLSNLGMFG 57
[Close]
BLAST of mRNA_H-canaliculatus_F_contig10772.727.1 vs. uniprot
Match: A0A7S0XXD4_HEMAN (Hypothetical protein n=2 Tax=Hemiselmis andersenii TaxID=464988 RepID=A0A7S0XXD4_HEMAN)

HSP 1 Score: 66.6 bits (161), Expect = 8.100e-12
Identity = 28/45 (62.22%), Postives = 34/45 (75.56%), Query Frame = 1 
Query:    1 NANMMSLLGLSTKWRELVGKAKAKQLKPDEYTGGTFTITNLGMFG 135
            N N+M +L LS  WR+LVGKAK   L P+EY  GTFT++NLGMFG
Sbjct:  178 NCNLMDILSLSASWRDLVGKAKGGTLSPEEYNSGTFTVSNLGMFG 222
[Close]
BLAST of mRNA_H-canaliculatus_F_contig10772.727.1 vs. uniprot
Match: A0A072VR15_MEDTR (Dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex n=4 Tax=Trifolieae TaxID=163742 RepID=A0A072VR15_MEDTR)

HSP 1 Score: 66.6 bits (161), Expect = 1.170e-11
Identity = 29/45 (64.44%), Postives = 38/45 (84.44%), Query Frame = 1 
Query:    1 NANMMSLLGLSTKWRELVGKAKAKQLKPDEYTGGTFTITNLGMFG 135
            NA+ + L  LS KW+ELVGKA++KQL+P+EY  GTFT++NLGMFG
Sbjct:  352 NADKLDLYLLSQKWKELVGKARSKQLQPNEYNSGTFTLSNLGMFG 396
[Close]
BLAST of mRNA_H-canaliculatus_F_contig10772.727.1 vs. uniprot
Match: UPI0018817C53 (2-oxo acid dehydrogenase subunit E2 n=1 Tax=Synechocystis sp. LEGE 06083 TaxID=915336 RepID=UPI0018817C53)

HSP 1 Score: 65.1 bits (157), Expect = 1.510e-11
Identity = 27/45 (60.00%), Postives = 38/45 (84.44%), Query Frame = 1 
Query:    1 NANMMSLLGLSTKWRELVGKAKAKQLKPDEYTGGTFTITNLGMFG 135
            NA+ + +  LS +W+ELV +A+AKQL+P+EY+ GTFTI+NLGMFG
Sbjct:  103 NADQVDIYSLSRRWKELVDRARAKQLQPEEYSSGTFTISNLGMFG 147
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig10772.727.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5LD66_9PHAE5.660e-2195.56Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A836C7H2_9STRA7.070e-1372.73Dihydrolipoamide acetyltransferase component of py... [more]
K8YSL5_NANGC5.880e-1268.89Pyruvate dehydrogenase E2 component (Dihydrolipoam... [more]
W7TSZ8_9STRA6.280e-1268.89Dihydrolipoamide acetyltransferase component of py... [more]
L1JKQ4_GUITC6.280e-1266.67Dihydrolipoamide acetyltransferase component of py... [more]
A0A838VUM2_9NOST6.640e-1262.222-oxo acid dehydrogenase subunit E2 n=1 Tax=Nostoc... [more]
K7P4G4_PINMU8.080e-1262.222-oxoacid_dh domain-containing protein (Fragment) ... [more]
A0A7S0XXD4_HEMAN8.100e-1262.22Hypothetical protein n=2 Tax=Hemiselmis andersenii... [more]
A0A072VR15_MEDTR1.170e-1164.44Dihydrolipoamide acetyltransferase component of py... [more]
UPI0018817C531.510e-1160.002-oxo acid dehydrogenase subunit E2 n=1 Tax=Synech... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig10772contigH-canaliculatus_F_contig10772:3005..3139 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score63.9
Seed ortholog evalue2e-08
Seed eggNOG ortholog82654.Pse7367_0465
Preferred namepdhC
KEGG rclassRC00004,RC00022,RC00583,RC02742,RC02833,RC02834,RC02857
KEGG koko:K00382,ko:K00627
KEGG ReactionR00209,R01221,R01698,R02569,R03815,R07618,R08549
KEGG Pathwayko00010,ko00020,ko00260,ko00280,ko00620,ko00630,ko00640,ko01100,ko01110,ko01120,ko01130,ko01200,map00010,map00020,map00260,map00280,map00620,map00630,map00640,map01100,map01110,map01120,map01130,map01200
KEGG ModuleM00009,M00011,M00036,M00307,M00532
EggNOG free text desc.Dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex
EggNOG OGs1G0GX@1117,1H8CP@1150,COG0508@1,COG0508@2
EC1.8.1.4,2.3.1.12
COG Functional cat.C
BiGG ReactioniJN678.odhB
Best tax levelOscillatoriales
Best eggNOG OGNA|NA|NA
BRITEbr01601,ko00000,ko00001,ko00002,ko01000,ko04147
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size135
Cds size126
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928740.6953535-UTR-H-canaliculatus_F_contig10772:3004..30131622928740.6953535-UTR-H-canaliculatus_F_contig10772:3004..3013Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig10772 3005..3013 +
1696845546.171552-UTR-H-canaliculatus_F_contig10772:3004..30131696845546.171552-UTR-H-canaliculatus_F_contig10772:3004..3013Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig10772 3005..3013 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928740.715255-CDS-H-canaliculatus_F_contig10772:3013..31391622928740.715255-CDS-H-canaliculatus_F_contig10772:3013..3139Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10772 3014..3139 +
1696845546.183045-CDS-H-canaliculatus_F_contig10772:3013..31391696845546.183045-CDS-H-canaliculatus_F_contig10772:3013..3139Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10772 3014..3139 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig10772.727.1prot_H-canaliculatus_F_contig10772.727.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig10772 3014..3139 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig10772.727.1

>prot_H-canaliculatus_F_contig10772.727.1 ID=prot_H-canaliculatus_F_contig10772.727.1|Name=mRNA_H-canaliculatus_F_contig10772.727.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=42bp
MMSLLGLSTKWRELVGKAKAKQLKPDEYTGGTFTITNLGMFG
back to top

mRNA from alignment at H-canaliculatus_F_contig10772:3005..3139+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig10772.727.1 ID=mRNA_H-canaliculatus_F_contig10772.727.1|Name=mRNA_H-canaliculatus_F_contig10772.727.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=135bp|location=Sequence derived from alignment at H-canaliculatus_F_contig10772:3005..3139+ (Hapterophycus canaliculatus Oshoro5f female)
AACGCCAACATGATGAGCCTGCTGGGCCTGTCGACGAAGTGGAGGGAGCT
GGTCGGCAAGGCGAAGGCGAAGCAGCTCAAGCCCGACGAGTACACCGGAG
GGACTTTCACCATCACCAACCTCGGCATGTTCGGT
back to top

Coding sequence (CDS) from alignment at H-canaliculatus_F_contig10772:3005..3139+

>mRNA_H-canaliculatus_F_contig10772.727.1 ID=mRNA_H-canaliculatus_F_contig10772.727.1|Name=mRNA_H-canaliculatus_F_contig10772.727.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=252bp|location=Sequence derived from alignment at H-canaliculatus_F_contig10772:3005..3139+ (Hapterophycus canaliculatus Oshoro5f female)
ATGATGAGCCTGCTGGGCCTGTCGACGAAGTGGAGGGAGCTGGTCGGCAA
GGCGAAGGCGAAGCAGCTCAAGCCCGACGAGTACACCGGAGGGACTTTCA
CCATCACCAACCTCGGCATGTTCGGTATGATGAGCCTGCTGGGCCTGTCG
ACGAAGTGGAGGGAGCTGGTCGGCAAGGCGAAGGCGAAGCAGCTCAAGCC
CGACGAGTACACCGGAGGGACTTTCACCATCACCAACCTCGGCATGTTCG
GT
back to top