mRNA_H-canaliculatus_F_contig1004.74.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig1004.74.1
Unique NamemRNA_H-canaliculatus_F_contig1004.74.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
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BLAST of mRNA_H-canaliculatus_F_contig1004.74.1 vs. uniprot
Match: A0A6H5JUU1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUU1_9PHAE)

HSP 1 Score: 170 bits (430), Expect = 1.640e-45
Identity = 81/116 (69.83%), Postives = 94/116 (81.03%), Query Frame = 2 
Query:  266 QGFSERQNIMAAYV*DQFAKVYFTPQNLGGGCNLACPAAHLALTRLIDKHDDSSRLTGRPIIQHAHWQVDICVSKNKNNLFVGYAGSLVVANAIGVVEINFMQVGHTHTKIDQVFS 613
            +G+SERQ IMA ++  QF +VYFTPQ LGGGCNLAC AAHLA+TR+IDK+ DS       IIQHAHWQVD CVS+NKNN F+GYAG LV A+ + VVEI+FM VGHTHTKIDQVFS
Sbjct:  156 RGYSERQKIMAVHIEGQFVEVYFTPQYLGGGCNLACTAAHLAITRIIDKYHDSPPHPSGCIIQHAHWQVDNCVSENKNNFFLGYAGLLVAADVVRVVEIHFMMVGHTHTKIDQVFS 271
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BLAST of mRNA_H-canaliculatus_F_contig1004.74.1 vs. uniprot
Match: A0A6H5KA02_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KA02_9PHAE)

HSP 1 Score: 103 bits (258), Expect = 2.740e-22
Identity = 56/115 (48.70%), Postives = 67/115 (58.26%), Query Frame = 2 
Query:  269 GFSERQNIMAAYV*DQFAKVYFTPQNLGGGCNLACPAAHLALTRLIDKHDDSSRLTGRPIIQHAHWQVDICVSKNKNNLFVGYAGSLVVANAIGVVEINFMQVGHTHTKIDQVFS 613
            GFSERQ +MA      F  V+F PQ  GGG NL C A  LAL RL        +   R  I+  H Q+D CV +NKNN+ + + G LV A  IG  E+ F+ VGHTH KIDQVFS
Sbjct:   93 GFSERQKVMAVQAEGAFVDVHFVPQTTGGGSNLVCTALWLALKRLSAMGTKPGQ---RFYIKRLHLQLDNCVGENKNNIVLAFIGGLVAAGVIGSAEVCFLIVGHTHIKIDQVFS 204
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BLAST of mRNA_H-canaliculatus_F_contig1004.74.1 vs. uniprot
Match: A0A6H5JCW3_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JCW3_9PHAE)

HSP 1 Score: 97.1 bits (240), Expect = 7.260e-20
Identity = 45/67 (67.16%), Postives = 51/67 (76.12%), Query Frame = 2 
Query:  413 HDDSSRLTGRPIIQHAHWQVDICVSKNKNNLFVGYAGSLVVANAIGVVEINFMQVGHTHTKIDQVFS 613
            HD  SR     +IQHAHWQVD C S+NKNN F+G+AG LV A+ I VVEINFM VGHTH KIDQ+FS
Sbjct:    2 HDKGSRHPSGYLIQHAHWQVDNCASENKNNFFLGFAGLLVAASVIRVVEINFMMVGHTHMKIDQIFS 68
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BLAST of mRNA_H-canaliculatus_F_contig1004.74.1 vs. uniprot
Match: A0A6H5KUA0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KUA0_9PHAE)

HSP 1 Score: 74.3 bits (181), Expect = 2.530e-14
Identity = 36/58 (62.07%), Postives = 41/58 (70.69%), Query Frame = 2 
Query:  440 RPIIQHAHWQVDICVSKNKNNLFVGYAGSLVVANAIGVVEINFMQVGHTHTKIDQVFS 613
            RP I     QVD CVS+NKN++ +GY GSLV    IG VE+ FM VGHTH KIDQVFS
Sbjct:    8 RPYIYRFTIQVDNCVSENKNHIVIGYLGSLVAQGIIGEVEVQFMPVGHTHIKIDQVFS 65
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BLAST of mRNA_H-canaliculatus_F_contig1004.74.1 vs. uniprot
Match: A0A6H5KN27_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KN27_9PHAE)

HSP 1 Score: 74.3 bits (181), Expect = 1.290e-12
Identity = 41/86 (47.67%), Postives = 50/86 (58.14%), Query Frame = 2 
Query:  356 GCNLACPAAHLALTRLIDKHDDSSRLTGRPIIQHAHWQVDICVSKNKNNLFVGYAGSLVVANAIGVVEINFMQVGHTHTKIDQVFS 613
            G NL C A  LAL RL        +   R  I+  H Q+D CV +NKNN+ + + G LV A  IG  E+ F+ VGHTH KIDQVFS
Sbjct:   10 GSNLVCTALWLALKRLSAMWTKPGQ---RFYIKRLHLQLDNCVGENKNNIVLAFIGGLVAAGVIGSAEVCFLIVGHTHIKIDQVFS 92
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BLAST of mRNA_H-canaliculatus_F_contig1004.74.1 vs. uniprot
Match: A0A6H5KAY2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KAY2_9PHAE)

HSP 1 Score: 74.3 bits (181), Expect = 4.870e-12
Identity = 41/86 (47.67%), Postives = 50/86 (58.14%), Query Frame = 2 
Query:  356 GCNLACPAAHLALTRLIDKHDDSSRLTGRPIIQHAHWQVDICVSKNKNNLFVGYAGSLVVANAIGVVEINFMQVGHTHTKIDQVFS 613
            G NL C A  LAL RL        +   R  I+  H Q+D CV +NKNN+ + + G LV A  IG  E+ F+ VGHTH KIDQVFS
Sbjct:   10 GSNLVCTALWLALKRLSAMWTKPGQ---RFYIKRLHLQLDNCVGENKNNIVLAFIGGLVAAGVIGSAEVCFLIVGHTHIKIDQVFS 92
[Close]
BLAST of mRNA_H-canaliculatus_F_contig1004.74.1 vs. uniprot
Match: A0A6H5JAR9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JAR9_9PHAE)

HSP 1 Score: 70.5 bits (171), Expect = 1.030e-10
Identity = 40/90 (44.44%), Postives = 51/90 (56.67%), Query Frame = 2 
Query:  356 GCNLACPAAHLALTRLIDKHDDSSRLTGRP----IIQHAHWQVDICVSKNKNNLFVGYAGSLVVANAIGVVEINFMQVGHTHTKIDQVFS 613
            G NL C    LAL RL       S +  +P     I+  H Q+D CV +NKNN+ + + G LV A  IG  E+ F+ +GHTH KIDQVFS
Sbjct:   10 GSNLECTTLWLALKRL-------SAMWTKPGERFHIKRRHLQLDNCVGENKNNIVMAFIGGLVAAGVIGFAEVCFLILGHTHIKIDQVFS 92
[Close]
BLAST of mRNA_H-canaliculatus_F_contig1004.74.1 vs. uniprot
Match: A0A6H5JXN7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JXN7_9PHAE)

HSP 1 Score: 60.5 bits (145), Expect = 2.950e-7
Identity = 28/56 (50.00%), Postives = 36/56 (64.29%), Query Frame = 2 
Query:  446 IIQHAHWQVDICVSKNKNNLFVGYAGSLVVANAIGVVEINFMQVGHTHTKIDQVFS 613
            ++  A    D CV +NKNN+ + + G LV A  IG  E+ F+ VGHTH KIDQVFS
Sbjct:  204 VLHQASPPSDNCVGENKNNIVLAFIGGLVAAGVIGSAEVCFLIVGHTHIKIDQVFS 259
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig1004.74.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 8
Match NameE-valueIdentityDescription
A0A6H5JUU1_9PHAE1.640e-4569.83Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KA02_9PHAE2.740e-2248.70Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JCW3_9PHAE7.260e-2067.16Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KUA0_9PHAE2.530e-1462.07Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KN27_9PHAE1.290e-1247.67Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KAY2_9PHAE4.870e-1247.67Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JAR9_9PHAE1.030e-1044.44Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JXN7_9PHAE2.950e-750.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig1004contigH-canaliculatus_F_contig1004:28969..31220 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons4
Model size616
Cds size495
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig1004.74.1prot_H-canaliculatus_F_contig1004.74.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig1004 28969..31100 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928632.2192595-CDS-H-canaliculatus_F_contig1004:28968..292361622928632.2192595-CDS-H-canaliculatus_F_contig1004:28968..29236Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1004 28969..29236 +
1696845503.8802114-CDS-H-canaliculatus_F_contig1004:28968..292361696845503.8802114-CDS-H-canaliculatus_F_contig1004:28968..29236Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1004 28969..29236 +
1622928632.2308013-CDS-H-canaliculatus_F_contig1004:30204..302921622928632.2308013-CDS-H-canaliculatus_F_contig1004:30204..30292Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1004 30205..30292 +
1696845503.8939116-CDS-H-canaliculatus_F_contig1004:30204..302921696845503.8939116-CDS-H-canaliculatus_F_contig1004:30204..30292Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1004 30205..30292 +
1622928632.2593966-CDS-H-canaliculatus_F_contig1004:30708..308211622928632.2593966-CDS-H-canaliculatus_F_contig1004:30708..30821Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1004 30709..30821 +
1696845503.9081702-CDS-H-canaliculatus_F_contig1004:30708..308211696845503.9081702-CDS-H-canaliculatus_F_contig1004:30708..30821Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1004 30709..30821 +
1622928632.273082-CDS-H-canaliculatus_F_contig1004:31074..311001622928632.273082-CDS-H-canaliculatus_F_contig1004:31074..31100Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1004 31075..31100 +
1696845503.9229944-CDS-H-canaliculatus_F_contig1004:31074..311001696845503.9229944-CDS-H-canaliculatus_F_contig1004:31074..31100Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1004 31075..31100 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928632.2848039-UTR-H-canaliculatus_F_contig1004:31100..312201622928632.2848039-UTR-H-canaliculatus_F_contig1004:31100..31220Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1004 31101..31220 +
1696845503.9312067-UTR-H-canaliculatus_F_contig1004:31100..312201696845503.9312067-UTR-H-canaliculatus_F_contig1004:31100..31220Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1004 31101..31220 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig1004.74.1

>prot_H-canaliculatus_F_contig1004.74.1 ID=prot_H-canaliculatus_F_contig1004.74.1|Name=mRNA_H-canaliculatus_F_contig1004.74.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=165bp
LVTPEEHGRNSLPFCGADLHEQGGIKHLGVCSWNVPNLIASFRSYTYTVL
HSTRTSSRRLFRVYPSEPSKRVSKTLFLQNAERAEASHPGLLRTPEHHGR
IRLRPVRESVLHSTESRRRLQPCLPSGPPCPHAAHRQARRQFPSYRASDN
PARALAGRHLRVQE*
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mRNA from alignment at H-canaliculatus_F_contig1004:28969..31220+

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig1004.74.1 ID=mRNA_H-canaliculatus_F_contig1004.74.1|Name=mRNA_H-canaliculatus_F_contig1004.74.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=2252bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1004:28969..31220+ (Hapterophycus canaliculatus Oshoro5f female)
TTGGTAACACCAGAAGAGCATGGGCGTAACTCTCTTCCTTTCTGTGGTGC
TGATCTTCATGAACAAGGCGGAATCAAGCACCTAGGTGTGTGTTCATGGA
ACGTGCCCAACTTGATTGCCTCATTCAGGAGCTATACCTACACAGTCCTA
CACAGTACGAGGACTTCATCAAGGAGGCTGTTCCGAGTCTACCCTAGCGA
ACCCTCGAAGCGGGTAAGCAAGACCCTTTTTCTCCAGAATGCTGAGAGAG
CAGAGGCCTCGCATCCAGGTGAAAGTTGGAGGAGATTTCATGAAATGCGA
CACATGCGTCGCGTTGAAGCGGTACGGTGCACCTGGTGTCAAACCAACAC
TGGACTTCACGGCCCGCCAGGCCATCGAGAAGGAGCTGTCTGCCCACCGG
AAGGTACTGTAGGCCACGTGCTTCAATACTACTCACGTAGTTACGAGACG
TGGAGCGCAGCCTTCCCCCCCACCCGGCGCGAACCTTTGTAGGTGTTGTG
GTTAAGGGCTTATGACGAGCCGCCATTCGTGACTCGAGTACCTTGTTTGA
AGCTGTTTTTCGGTAGCGCGCAAGATTGGGGCTGTGGGATGAATCGGCTG
TGAGAGGGTTGCTGTGCGATACCCAAAAGCCTTCTTTTTCCTCCAGGGCA
GCATCGCCTAGCGGGCACAAAGGAGAACAGGAAGAAGAGGGTAATGTTTT
CCAATATACATCATAACATCATGTCTAATGTAGGTGTGTGTCATGTTCAG
TCACGTACCTGACAAGTACAGCAATTTTCGTCATCTTTATGAAGGTCTTC
ATTTTTCATGCTCGCCTGGCTTCCTGTGGCGCTCGCACGCTAGATGGTCA
CATTGGGTCGGCTGGTCGTCGCCAACAGCACGAACAATGCCATGCGGGCC
AAGGCCGACGGCAACTAGCTCGACTTTGTGTTCATGTCTGTAGACGCGGC
GAACCAAAGGTCGCACGCCCTCCCAGCCCTCTACCCACCGACTCACGGCT
GTGGCAGGTGAGCACAGGCATGCACAATCTCTCTGTCCCTACCTTCTTCT
CGGACGCGCGCCAAAAACAATCATGGAGTACCCCGTCTCATTCATAGTTA
GGATGCCGAGTCGGAGTAAGAAGCCGCATAGACGCACACAGTCTCGACAC
GTGGCCCGTTCCGTTCACCCTGATGAGGAGCCTACTCCTGAGTCCTCACT
TCACCTCTTTTTTCTCTCGTGCTTTTGTGTTCCAAGGGCTTCTCCGAACG
CCAGAACATCATGGCCGCATACGTCTAAGACCAGTTCGCGAAAGTGTACT
TCACTCCACAGAATCTAGGAGGAGGTATGTGTGTTTGGGGGGGCATTGAT
GCATCAGTCGCAGCACCGGAATACACGCTGTCGAAATGGCGAGTTCGGCC
GCAGTTTAGACGCGGAACTACAGTTGTATACCCGTGCATGATTTGAGTCC
ATACCACACGCAAACGCGATAGATGAGATGGAAGAGTAAACAAGCGTGCA
AAATACGATCCCTCGGCTCAGATTCAATGCAACATGGGGTGTAAACCAAA
CCAAAGATTCTGATAGATATTCGAAGAGGTCTCGTAGGCAAGATTATCAG
CTCCCCCGGTGGGCGCGTGTGCAGCAACGAAAGTGAGGAGAACAACACAT
ATTCATCCCTAGGTAGACGACGCGAACGTAATCACAGCTGCGAGTGGCAT
CCGTCGACTGACGACACAATGTGTCTTTATCCGGGTACAGGTTGCAACCT
TGCCTGCCCAGCGGCCCACCTTGCCCTCACGCGGCTCATCGACAAGCACG
ACGACAGTTCCCGTCTTACCGGGCGTCCGATAATCCAGCACGCGCATTGG
CAGGTTAGAAAATTCATCTTATCGGGGAGCCTTATGGGTTGGTGAGTGCC
GACCAATAGGTACTAAGAGTCTTTGACGCTTCAGGTGTCCTTTGTTGGCT
GACTTCGGTATGTCTGGTGATGGACTCGAGGTATCGGTCTATGACTATAT
GAAACGGATCCTCCTCTCCACGAAACGTCGTGACTGAAGTGAACGGCAAT
TAGTCCTGAACGTTGCTGTACTTCCTTTCTCTTCACTGCCCCCCGAAACA
CCCCAGGTAGACATCTGCGTGTCCAAGAATAAGAACAACTTATTCGTCGG
ATACGCGGGCTCTTTGGTAGTGGCGAATGCCATCGGCGTGGTGGAGATAA
ACTTCATGCAAGTGGGTCACACCCACACGAAAATCGACCAAGTATTTTCG
AG
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig1004:28969..31220+

>mRNA_H-canaliculatus_F_contig1004.74.1 ID=mRNA_H-canaliculatus_F_contig1004.74.1|Name=mRNA_H-canaliculatus_F_contig1004.74.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=990bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1004:28969..31220+ (Hapterophycus canaliculatus Oshoro5f female)
TTGGTAACACCAGAAGAGCATGGGCGTAACTCTCTTCCTTTCTGTGGTGC
TGATCTTCATGAACAAGGCGGAATCAAGCACCTAGGTGTGTGTTCATGGA
ACGTGCCCAACTTGATTGCCTCATTCAGGAGCTATACCTACACAGTCCTA
CACAGTACGAGGACTTCATCAAGGAGGCTGTTCCGAGTCTACCCTAGCGA
ACCCTCGAAGCGGGTAAGCAAGACCCTTTTTCTCCAGAATGCTGAGAGAG
CAGAGGCCTCGCATCCAGTTGGTAACACCAGAAGAGCATGGGCGTAACTC
TCTTCCTTTCTGTGGTGCTGATCTTCATGAACAAGGCGGAATCAAGCACC
TAGGTGTGTGTTCATGGAACGTGCCCAACTTGATTGCCTCATTCAGGAGC
TATACCTACACAGTCCTACACAGTACGAGGACTTCATCAAGGAGGCTGTT
CCGAGTCTACCCTAGCGAACCCTCGAAGCGGGTAAGCAAGACCCTTTTTC
TCCAGAATGCTGAGAGAGCAGAGGCCTCGCATCCAGGGCTTCTCCGAACG
CCAGAACATCATGGCCGCATACGTCTAAGACCAGTTCGCGAAAGTGTACT
TCACTCCACAGAATCTAGGAGGAGGGCTTCTCCGAACGCCAGAACATCAT
GGCCGCATACGTCTAAGACCAGTTCGCGAAAGTGTACTTCACTCCACAGA
ATCTAGGAGGAGGTTGCAACCTTGCCTGCCCAGCGGCCCACCTTGCCCTC
ACGCGGCTCATCGACAAGCACGACGACAGTTCCCGTCTTACCGGGCGTCC
GATAATCCAGCACGCGCATTGGCAGGTTGCAACCTTGCCTGCCCAGCGGC
CCACCTTGCCCTCACGCGGCTCATCGACAAGCACGACGACAGTTCCCGTC
TTACCGGGCGTCCGATAATCCAGCACGCGCATTGGCAGGTAGACATCTGC
GTGTCCAAGAATAAGTAGACATCTGCGTGTCCAAGAATAA
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