mRNA_H-canaliculatus_F_contig10037.71.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig10037.71.1
Unique NamemRNA_H-canaliculatus_F_contig10037.71.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig10037.71.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig10037contigH-canaliculatus_F_contig10037:3281..4301 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size1021
Cds size522
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig10037.71.1prot_H-canaliculatus_F_contig10037.71.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig10037 3671..4192 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928632.1476827-UTR-H-canaliculatus_F_contig10037:3280..36701622928632.1476827-UTR-H-canaliculatus_F_contig10037:3280..3670Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig10037 3281..3670 +
1696845503.8508086-UTR-H-canaliculatus_F_contig10037:3280..36701696845503.8508086-UTR-H-canaliculatus_F_contig10037:3280..3670Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig10037 3281..3670 +
1622928632.174786-UTR-H-canaliculatus_F_contig10037:4192..43011622928632.174786-UTR-H-canaliculatus_F_contig10037:4192..4301Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig10037 4193..4301 +
1696845503.8685558-UTR-H-canaliculatus_F_contig10037:4192..43011696845503.8685558-UTR-H-canaliculatus_F_contig10037:4192..4301Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig10037 4193..4301 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928632.1619627-CDS-H-canaliculatus_F_contig10037:3670..41921622928632.1619627-CDS-H-canaliculatus_F_contig10037:3670..4192Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10037 3671..4192 +
1696845503.8590071-CDS-H-canaliculatus_F_contig10037:3670..41921696845503.8590071-CDS-H-canaliculatus_F_contig10037:3670..4192Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10037 3671..4192 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig10037.71.1

>prot_H-canaliculatus_F_contig10037.71.1 ID=prot_H-canaliculatus_F_contig10037.71.1|Name=mRNA_H-canaliculatus_F_contig10037.71.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=174bp
MSPETTYFGITAGRASRARPCLCTCTHPPLPAGGANSSPYARDPTRILPS
SACSLGECPARPVTALFPVRAGGGTRSSIQAIERISDVARTAAAAAAAAP
ARQSETANRFEPGGRRRSARQSSFHSTGVITYTLRKATWHGAFALRAVSA
VRVLRRATPGCQPRAGKRGHTEV*
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mRNA from alignment at H-canaliculatus_F_contig10037:3281..4301+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig10037.71.1 ID=mRNA_H-canaliculatus_F_contig10037.71.1|Name=mRNA_H-canaliculatus_F_contig10037.71.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=1021bp|location=Sequence derived from alignment at H-canaliculatus_F_contig10037:3281..4301+ (Hapterophycus canaliculatus Oshoro5f female)
ACCGATAAACCGATAGGGACGGAGGGCGCTGTGTCGTTGGTGTTCGTGAG
GAGGCCAGGAGAGAGGGGGACGAACGACCCGCGCCCCCGCCCCCCATCCC
CCCCGCAGTCTCTCTCTCCACTCCTGCTTCGACCCCAGCGCCGACGGCAA
AGCTCGCGGGCTGCTCGCTGAGCGCAAAGCTCTCGAACTCCCACGCGTGT
ACATGCTGCCTGCGTCTGCCCTGACCACCTTGACGCCCAGCAGTGGCGCG
AGAGTTCTTGCTGGCGCACCTCCGCTTCGCTTCTACCCCACGCTGCTGTG
ACCACCGCTCTGCTTCTCATCGTGTGTCAAGGTAACTCCACCGGCAGAGA
GAAACCCGAGGTGATCCTTCCAAGCGGAACTCGCGGGTTGATGTCTCCCG
AGACAACATATTTCGGGATCACTGCTGGAAGAGCGAGTCGCGCGAGACCT
TGCCTCTGCACTTGTACCCACCCTCCTCTCCCGGCCGGTGGCGCGAACTC
TTCGCCGTACGCGAGGGATCCGACACGAATCCTACCCTCGAGTGCCTGCT
CGCTCGGAGAGTGTCCCGCTCGTCCCGTCACGGCTCTTTTTCCCGTAAGA
GCGGGCGGCGGCACGCGCTCATCCATCCAGGCAATTGAGCGGATATCGGA
CGTCGCGAGAACGGCAGCAGCAGCAGCAGCAGCAGCACCCGCGCGACAAA
GCGAAACCGCGAACAGGTTCGAGCCGGGCGGACGGCGGCGTTCGGCCCGC
CAAAGCAGCTTTCATTCGACGGGGGTGATAACATACACCCTCCGAAAGGC
TACCTGGCATGGTGCTTTCGCTCTTCGAGCTGTTTCCGCGGTTCGTGTTC
TGCGCAGGGCAACACCTGGGTGCCAACCGCGGGCAGGGAAACGCGGGCAC
ACCGAGGTGTGATTTCGAACAACAACAACAGTGAGATGGCCACCGCGCAA
GACCCAAAGGCGTGAACACTTACGTACGTACAGGCTACCTCCCCGCTACG
GGAAAAGACAAAAAAAATCGA
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig10037:3281..4301+

>mRNA_H-canaliculatus_F_contig10037.71.1 ID=mRNA_H-canaliculatus_F_contig10037.71.1|Name=mRNA_H-canaliculatus_F_contig10037.71.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=1044bp|location=Sequence derived from alignment at H-canaliculatus_F_contig10037:3281..4301+ (Hapterophycus canaliculatus Oshoro5f female)
ATGTCTCCCGAGACAACATATTTCGGGATCACTGCTGGAAGAGCGAGTCG
CGCGAGACCTTGCCTCTGCACTTGTACCCACCCTCCTCTCCCGGCCGGTG
GCGCGAACTCTTCGCCGTACGCGAGGGATCCGACACGAATCCTACCCTCG
AGTGCCTGCTCGCTCGGAGAGTGTCCCGCTCGTCCCGTCACGGCTCTTTT
TCCCGTAAGAGCGGGCGGCGGCACGCGCTCATCCATCCAGGCAATTGAGC
GGATATCGGACGTCGCGAGAACGGCAGCAGCAGCAGCAGCAGCAGCACCC
GCGCGACAAAGCGAAACCGCGAACAGGTTCGAGCCGGGCGGACGGCGGCG
TTCGGCCCGCCAAAGCAGCTTTCATTCGACGGGGGTGATAACATACACCC
TCCGAAAGGCTACCTGGCATGGTGCTTTCGCTCTTCGAGCTGTTTCCGCG
GTTCGTGTTCTGCGCAGGGCAACACCTGGGTGCCAACCGCGGGCAGGGAA
ACGCGGGCACACCGAGGTGTGAATGTCTCCCGAGACAACATATTTCGGGA
TCACTGCTGGAAGAGCGAGTCGCGCGAGACCTTGCCTCTGCACTTGTACC
CACCCTCCTCTCCCGGCCGGTGGCGCGAACTCTTCGCCGTACGCGAGGGA
TCCGACACGAATCCTACCCTCGAGTGCCTGCTCGCTCGGAGAGTGTCCCG
CTCGTCCCGTCACGGCTCTTTTTCCCGTAAGAGCGGGCGGCGGCACGCGC
TCATCCATCCAGGCAATTGAGCGGATATCGGACGTCGCGAGAACGGCAGC
AGCAGCAGCAGCAGCAGCACCCGCGCGACAAAGCGAAACCGCGAACAGGT
TCGAGCCGGGCGGACGGCGGCGTTCGGCCCGCCAAAGCAGCTTTCATTCG
ACGGGGGTGATAACATACACCCTCCGAAAGGCTACCTGGCATGGTGCTTT
CGCTCTTCGAGCTGTTTCCGCGGTTCGTGTTCTGCGCAGGGCAACACCTG
GGTGCCAACCGCGGGCAGGGAAACGCGGGCACACCGAGGTGTGA
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