mRNA_H-canaliculatus_F_contig10727.696.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig10727.696.1
Unique NamemRNA_H-canaliculatus_F_contig10727.696.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig10727.696.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig10727contigH-canaliculatus_F_contig10727:4234..4687 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Exons1
Model size454
Cds size363
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928736.032938-CDS-H-canaliculatus_F_contig10727:4233..45961622928736.032938-CDS-H-canaliculatus_F_contig10727:4233..4596Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10727 4234..4596 +
1696845544.500397-CDS-H-canaliculatus_F_contig10727:4233..45961696845544.500397-CDS-H-canaliculatus_F_contig10727:4233..4596Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10727 4234..4596 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928736.0514119-UTR-H-canaliculatus_F_contig10727:4596..46871622928736.0514119-UTR-H-canaliculatus_F_contig10727:4596..4687Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig10727 4597..4687 +
1696845544.50986-UTR-H-canaliculatus_F_contig10727:4596..46871696845544.50986-UTR-H-canaliculatus_F_contig10727:4596..4687Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig10727 4597..4687 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig10727.696.1prot_H-canaliculatus_F_contig10727.696.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig10727 4234..4596 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig10727.696.1

>prot_H-canaliculatus_F_contig10727.696.1 ID=prot_H-canaliculatus_F_contig10727.696.1|Name=mRNA_H-canaliculatus_F_contig10727.696.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=121bp
MAGTGVLLGGLGIVGVGLPLRGLRIAGVGLLRRVLRSAGVGLTSAQTEDS
KRWTSAYIMRPRQDFFERAGDLGSGVYLSVSRALACWLPYFRFSLRPCWA
VFGARNARVQDTIQSRHIRL*
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mRNA from alignment at H-canaliculatus_F_contig10727:4234..4687+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig10727.696.1 ID=mRNA_H-canaliculatus_F_contig10727.696.1|Name=mRNA_H-canaliculatus_F_contig10727.696.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=454bp|location=Sequence derived from alignment at H-canaliculatus_F_contig10727:4234..4687+ (Hapterophycus canaliculatus Oshoro5f female)
ATGGCCGGCACCGGTGTACTACTGGGTGGATTAGGGATCGTCGGCGTTGG
CCTACCTCTGCGTGGATTGAGGATCGCTGGCGTCGGTTTGCTGAGGCGTG
TATTGAGGTCCGCCGGCGTCGGTTTGACTTCGGCGCAGACTGAGGATAGC
AAGCGTTGGACTTCAGCATACATCATGAGGCCGCGTCAGGATTTCTTCGA
AAGAGCAGGAGATTTGGGCAGTGGGGTCTACCTTTCGGTTTCACGTGCAC
TTGCATGCTGGCTGCCGTACTTTCGGTTTTCGTTGCGCCCGTGTTGGGCC
GTTTTCGGAGCACGGAATGCCCGGGTGCAGGACACAATTCAGTCACGACA
CATCCGGTTGTGAGTCTGCCTTACGCAAACGAACCAACGAATTACGCGCG
CTCTCCGCAAGAGCACGTAAGACGCCTGTGGCTGGGGCCGTTGCCGAGTT
ATCT
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig10727:4234..4687+

>mRNA_H-canaliculatus_F_contig10727.696.1 ID=mRNA_H-canaliculatus_F_contig10727.696.1|Name=mRNA_H-canaliculatus_F_contig10727.696.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=726bp|location=Sequence derived from alignment at H-canaliculatus_F_contig10727:4234..4687+ (Hapterophycus canaliculatus Oshoro5f female)
ATGGCCGGCACCGGTGTACTACTGGGTGGATTAGGGATCGTCGGCGTTGG
CCTACCTCTGCGTGGATTGAGGATCGCTGGCGTCGGTTTGCTGAGGCGTG
TATTGAGGTCCGCCGGCGTCGGTTTGACTTCGGCGCAGACTGAGGATAGC
AAGCGTTGGACTTCAGCATACATCATGAGGCCGCGTCAGGATTTCTTCGA
AAGAGCAGGAGATTTGGGCAGTGGGGTCTACCTTTCGGTTTCACGTGCAC
TTGCATGCTGGCTGCCGTACTTTCGGTTTTCGTTGCGCCCGTGTTGGGCC
GTTTTCGGAGCACGGAATGCCCGGGTGCAGGACACAATTCAGTCACGACA
CATCCGGTTGTGAATGGCCGGCACCGGTGTACTACTGGGTGGATTAGGGA
TCGTCGGCGTTGGCCTACCTCTGCGTGGATTGAGGATCGCTGGCGTCGGT
TTGCTGAGGCGTGTATTGAGGTCCGCCGGCGTCGGTTTGACTTCGGCGCA
GACTGAGGATAGCAAGCGTTGGACTTCAGCATACATCATGAGGCCGCGTC
AGGATTTCTTCGAAAGAGCAGGAGATTTGGGCAGTGGGGTCTACCTTTCG
GTTTCACGTGCACTTGCATGCTGGCTGCCGTACTTTCGGTTTTCGTTGCG
CCCGTGTTGGGCCGTTTTCGGAGCACGGAATGCCCGGGTGCAGGACACAA
TTCAGTCACGACACATCCGGTTGTGA
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