mRNA_H-canaliculatus_F_contig10033.69.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig10033.69.1
Unique NamemRNA_H-canaliculatus_F_contig10033.69.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
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BLAST of mRNA_H-canaliculatus_F_contig10033.69.1 vs. uniprot
Match: D8LU31_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LU31_ECTSI)

HSP 1 Score: 167 bits (423), Expect = 3.830e-47
Identity = 96/110 (87.27%), Postives = 101/110 (91.82%), Query Frame = 1 
Query:   10 FGADCSRRLLGLPTALRLATLSRNITSPLAMAICSMVGADLSLAIAIVVMTGVIGANFGATVLDALGVRDPAARGLAQGGSAHGLGTAAMVNEPTAFAFSAVAMALTATA 339
            FG     RLLGLPT LRLA LSRNITSPLAMAICS++GAD SLAIAIVV+TGVIGANFGAT LDALGV+DPAARGLAQGGSAHGLGTAAMVNEPTAFAFSAV+MALTATA
Sbjct:  393 FGTALVSRLLGLPTTLRLAALSRNITSPLAMAICSLIGADPSLAIAIVVLTGVIGANFGATALDALGVKDPAARGLAQGGSAHGLGTAAMVNEPTAFAFSAVSMALTATA 502
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BLAST of mRNA_H-canaliculatus_F_contig10033.69.1 vs. uniprot
Match: A0A7S1ZXA6_TRICV (Hypothetical protein (Fragment) n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S1ZXA6_TRICV)

HSP 1 Score: 119 bits (297), Expect = 7.860e-31
Identity = 71/114 (62.28%), Postives = 85/114 (74.56%), Query Frame = 1 
Query:    1 GDHFGADCSRRLLGLPTA-LRLATLSRNITSPLAMAICSMVGADLSLAIAIVVMTGVIGANFGATVLDALGVRDPAARGLAQGGSAHGLGTAAMVNEPTAFAFSAVAMALTATA 339
            G  FG     RLL +    LRL  LSRNITSPLAMAI SM+GAD+ LA++ VV+TG+IGANFGA++LDA G+ DP ARGL  G +AHGLGTAA  NE  AF F+A+ MALTA+A
Sbjct:  121 GGLFGTSLLVRLLAIADPILRLCMLSRNITSPLAMAIASMIGADVGLAVSTVVVTGLIGANFGASILDAFGITDPVARGLGVGAAAHGLGTAAFANEGDAFPFAAIGMALTASA 234
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BLAST of mRNA_H-canaliculatus_F_contig10033.69.1 vs. uniprot
Match: A0A7S2R126_9STRA (Hypothetical protein n=1 Tax=Eucampia antarctica TaxID=49252 RepID=A0A7S2R126_9STRA)

HSP 1 Score: 117 bits (292), Expect = 1.330e-30
Identity = 70/114 (61.40%), Postives = 86/114 (75.44%), Query Frame = 1 
Query:    1 GDHFGADCSRRLLGLPTA-LRLATLSRNITSPLAMAICSMVGADLSLAIAIVVMTGVIGANFGATVLDALGVRDPAARGLAQGGSAHGLGTAAMVNEPTAFAFSAVAMALTATA 339
            G  FG     R L +    LRL+ LSRNITSPLAMAI  ++GAD+SLA+++VVMTG+IGANFGA +LDA G+ D  ARGL  G +AHGLGTAA  NEP AF F+A++MALTA+A
Sbjct:   72 GGLFGTAALVRFLKIANPMLRLSLLSRNITSPLAMAIAGILGADVSLAVSMVVMTGLIGANFGAAILDAFGITDAVARGLGIGAAAHGLGTAAFANEPDAFPFAAISMALTASA 185
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BLAST of mRNA_H-canaliculatus_F_contig10033.69.1 vs. uniprot
Match: A0A0G4H6K0_VITBC (Uncharacterized protein n=3 Tax=Vitrella brassicaformis TaxID=1169539 RepID=A0A0G4H6K0_VITBC)

HSP 1 Score: 120 bits (302), Expect = 9.530e-30
Identity = 68/109 (62.39%), Postives = 88/109 (80.73%), Query Frame = 1 
Query:   10 FGADCSRRLLGLPTALRLATLSRNITSPLAMAICSMVGADLSLAIAIVVMTGVIGANFGATVLDALGVRDPAARGLAQGGSAHGLGTAAMVNEPTAFAFSAVAMALTAT 336
            FG     RL+GL + LRLATL R+IT+PLA+ + +M+GAD  LA+A+VV+TG++GANFGA +L +LG+ +P ARGLA G +AHGLGTAA+VNE  AF FSA+AMALTAT
Sbjct:  418 FGTAIGARLIGLASDLRLATLPRSITAPLAIEVANMLGADGRLAVALVVLTGILGANFGALLLTSLGITNPTARGLAMGSAAHGLGTAAIVNEGEAFTFSAIAMALTAT 526
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BLAST of mRNA_H-canaliculatus_F_contig10033.69.1 vs. uniprot
Match: A0A1Z5JZL6_FISSO (Uncharacterized protein n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5JZL6_FISSO)

HSP 1 Score: 119 bits (297), Expect = 3.340e-29
Identity = 72/114 (63.16%), Postives = 87/114 (76.32%), Query Frame = 1 
Query:    1 GDHFGADCSRRLLGLPTA-LRLATLSRNITSPLAMAICSMVGADLSLAIAIVVMTGVIGANFGATVLDALGVRDPAARGLAQGGSAHGLGTAAMVNEPTAFAFSAVAMALTATA 339
            G  +G     RLL +    LRL+ LSRNITSPLAMAI  ++GAD+SLA+  VV+TGV GANFGAT+L ALG++DP ARGL+ G SAHGLGTAA  NE  AF F+A+AMALTA+A
Sbjct:  362 GGLYGTALLVRLLDVGNPFLRLSLLSRNITSPLAMAIAGIIGADVSLAVTAVVITGVFGANFGATILTALGIKDPVARGLSIGASAHGLGTAAFANEKDAFPFAAIAMALTASA 475
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BLAST of mRNA_H-canaliculatus_F_contig10033.69.1 vs. uniprot
Match: B7FZ18_PHATC (Predicted protein n=2 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=B7FZ18_PHATC)

HSP 1 Score: 117 bits (294), Expect = 1.090e-28
Identity = 72/115 (62.61%), Postives = 93/115 (80.87%), Query Frame = 1 
Query:    1 GDHFGADCSRRLLGLPT-ALRLATLSRNITSPLAMAICSMVG-ADLSLAIAIVVMTGVIGANFGATVLDALGVRDPAARGLAQGGSAHGLGTAAMVNEPTAFAFSAVAMALTATA 339
            G  FG   + R L +   A+RL+ LSRNITSPLAM+I S++G AD+SLA+++VV+TG+IGANFGAT+LDALG+RD  ARGL  G +AHGLGTAA+VNE  AF F+A++MALTA+A
Sbjct:  388 GGLFGTAWAVRFLSIGNPAVRLSLLSRNITSPLAMSIASILGGADVSLAVSMVVITGLIGANFGATLLDALGIRDAVARGLGMGAAAHGLGTAAIVNEKDAFPFAAISMALTASA 502
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BLAST of mRNA_H-canaliculatus_F_contig10033.69.1 vs. uniprot
Match: B8CB30_THAPS (Uncharacterized protein n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8CB30_THAPS)

HSP 1 Score: 115 bits (287), Expect = 1.040e-27
Identity = 68/114 (59.65%), Postives = 88/114 (77.19%), Query Frame = 1 
Query:    1 GDHFGADCSRRLLGLPTAL-RLATLSRNITSPLAMAICSMVGADLSLAIAIVVMTGVIGANFGATVLDALGVRDPAARGLAQGGSAHGLGTAAMVNEPTAFAFSAVAMALTATA 339
            G  +G   + RLL +   + RL+ LSRNITSPLAMAI S++GAD+SLA+ IVV+TG+ GANFGA++LDA G++D  ARGL  G +AHGLGTAA  +E  AF F+A+AMALTA+A
Sbjct:  391 GGLYGTAAAVRLLNIVNPMIRLSLLSRNITSPLAMAIASILGADVSLAVTIVVLTGLFGANFGASILDAAGIKDSVARGLGIGAAAHGLGTAAFADEKDAFPFAAIAMALTASA 504
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BLAST of mRNA_H-canaliculatus_F_contig10033.69.1 vs. uniprot
Match: A0A7S3VAA5_9STRA (Hypothetical protein n=1 Tax=Chaetoceros debilis TaxID=122233 RepID=A0A7S3VAA5_9STRA)

HSP 1 Score: 115 bits (287), Expect = 1.080e-27
Identity = 69/114 (60.53%), Postives = 86/114 (75.44%), Query Frame = 1 
Query:    1 GDHFGADCSRRLLGLPTA-LRLATLSRNITSPLAMAICSMVGADLSLAIAIVVMTGVIGANFGATVLDALGVRDPAARGLAQGGSAHGLGTAAMVNEPTAFAFSAVAMALTATA 339
            G  FG     RL  +    LRL  LSRNITSPLAMAI  ++GAD+SLA+++VV+TG+IGANFGA +LDA+GV+D  ARGL  G +AHGLGTAA  NE  AF F+A++MALTA+A
Sbjct:  396 GGLFGTAAMARLFNVGNPMLRLCLLSRNITSPLAMAIAGILGADVSLAVSMVVVTGLIGANFGAAILDAVGVKDAVARGLGIGAAAHGLGTAAFANEKDAFPFAAISMALTASA 509
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BLAST of mRNA_H-canaliculatus_F_contig10033.69.1 vs. uniprot
Match: A0A7S2Y5J7_9STRA (Hypothetical protein n=1 Tax=Amphiprora paludosa TaxID=265537 RepID=A0A7S2Y5J7_9STRA)

HSP 1 Score: 114 bits (286), Expect = 1.860e-27
Identity = 70/112 (62.50%), Postives = 89/112 (79.46%), Query Frame = 1 
Query:    1 GDHFGADCSRRLL--GLPTALRLATLSRNITSPLAMAICSMVGADLSLAIAIVVMTGVIGANFGATVLDALGVRDPAARGLAQGGSAHGLGTAAMVNEPTAFAFSAVAMALT 330
            G  FG     RLL  G PT +RLA LSRNITSPLAMAI  ++GAD+SLA+++VV+TG++GANFGA++L ALG++D  ARGL  G +AHGLGTAA+V+E  AF F+A+AMALT
Sbjct:  447 GGLFGTAAIVRLLEIGDPT-IRLALLSRNITSPLAMAIAGILGADVSLAVSMVVITGLLGANFGASILSALGIKDAVARGLGIGAAAHGLGTAAIVDEKDAFPFAAIAMALT 557
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BLAST of mRNA_H-canaliculatus_F_contig10033.69.1 vs. uniprot
Match: A0A7S0EAH9_9EUKA (Hypothetical protein n=1 Tax=Phaeocystis antarctica TaxID=33657 RepID=A0A7S0EAH9_9EUKA)

HSP 1 Score: 107 bits (267), Expect = 2.140e-27
Identity = 63/109 (57.80%), Postives = 80/109 (73.39%), Query Frame = 1 
Query:   10 FGADCSRRLLGLPTALRLATLSRNITSPLAMAICSMVGADLSLAIAIVVMTGVIGANFGATVLDALGVRDPAARGLAQGGSAHGLGTAAM-VNEPTAFAFSAVAMALTA 333
            FG     R +GLP+A+RLA + R +T+PLA+AI  M+GAD SLA  IVV+TG++ ANFGA  LDA+  +DP ARGL  G + HGLGTAAM  +EP AF F+A+AMAL A
Sbjct:   26 FGTAAFARYIGLPSAVRLAAVPRQVTAPLAIAIAGMLGADPSLAATIVVLTGLVVANFGAAALDAIKCKDPVARGLTMGAAGHGLGTAAMSASEPDAFPFAAIAMALNA 134
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig10033.69.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LU31_ECTSI3.830e-4787.27Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A7S1ZXA6_TRICV7.860e-3162.28Hypothetical protein (Fragment) n=1 Tax=Trieres ch... [more]
A0A7S2R126_9STRA1.330e-3061.40Hypothetical protein n=1 Tax=Eucampia antarctica T... [more]
A0A0G4H6K0_VITBC9.530e-3062.39Uncharacterized protein n=3 Tax=Vitrella brassicaf... [more]
A0A1Z5JZL6_FISSO3.340e-2963.16Uncharacterized protein n=2 Tax=Fistulifera solari... [more]
B7FZ18_PHATC1.090e-2862.61Predicted protein n=2 Tax=Phaeodactylum tricornutu... [more]
B8CB30_THAPS1.040e-2759.65Uncharacterized protein n=1 Tax=Thalassiosira pseu... [more]
A0A7S3VAA5_9STRA1.080e-2760.53Hypothetical protein n=1 Tax=Chaetoceros debilis T... [more]
A0A7S2Y5J7_9STRA1.860e-2762.50Hypothetical protein n=1 Tax=Amphiprora paludosa T... [more]
A0A7S0EAH9_9EUKA2.140e-2757.80Hypothetical protein n=1 Tax=Phaeocystis antarctic... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig10033contigH-canaliculatus_F_contig10033:465..1694 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score169.5
Seed ortholog evalue9.1e-40
Seed eggNOG ortholog2880.D8LU31
GOsGO:0003674,GO:0005215,GO:0005342,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006810,GO:0006811,GO:0006820,GO:0006855,GO:0006996,GO:0008028,GO:0008150,GO:0008152,GO:0008509,GO:0008514,GO:0008643,GO:0009507,GO:0009526,GO:0009528,GO:0009536,GO:0009657,GO:0009658,GO:0009706,GO:0009853,GO:0009941,GO:0009987,GO:0015075,GO:0015144,GO:0015238,GO:0015318,GO:0015665,GO:0015711,GO:0015718,GO:0015849,GO:0015850,GO:0015893,GO:0016020,GO:0016043,GO:0019866,GO:0022857,GO:0031090,GO:0031967,GO:0031969,GO:0031975,GO:0034219,GO:0034220,GO:0042170,GO:0042221,GO:0042493,GO:0042873,GO:0042879,GO:0043094,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043879,GO:0044237,GO:0044422,GO:0044424,GO:0044434,GO:0044435,GO:0044444,GO:0044446,GO:0044464,GO:0046942,GO:0046943,GO:0050896,GO:0051179,GO:0051234,GO:0055085,GO:0071702,GO:0071840,GO:0097339,GO:0098656,GO:1900866,GO:1901618,GO:1901974,GO:1901975,GO:1903825,GO:1905039
EggNOG free text desc.LrgB-like family
EggNOG OGs2QQ63@2759,COG1346@1
COG Functional cat.M
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categorysignal anchor
Exons2
Model size339
Cds size339
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928631.9693005-CDS-H-canaliculatus_F_contig10033:464..6731622928631.9693005-CDS-H-canaliculatus_F_contig10033:464..673Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10033 465..673 +
1696845503.7305303-CDS-H-canaliculatus_F_contig10033:464..6731696845503.7305303-CDS-H-canaliculatus_F_contig10033:464..673Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10033 465..673 +
1622928631.9827144-CDS-H-canaliculatus_F_contig10033:1564..16941622928631.9827144-CDS-H-canaliculatus_F_contig10033:1564..1694Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10033 1565..1694 +
1696845503.7494633-CDS-H-canaliculatus_F_contig10033:1564..16941696845503.7494633-CDS-H-canaliculatus_F_contig10033:1564..1694Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10033 1565..1694 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig10033.69.1prot_H-canaliculatus_F_contig10033.69.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig10033 465..1694 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig10033.69.1

>prot_H-canaliculatus_F_contig10033.69.1 ID=prot_H-canaliculatus_F_contig10033.69.1|Name=mRNA_H-canaliculatus_F_contig10033.69.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=113bp
GDHFGADCSRRLLGLPTALRLATLSRNITSPLAMAICSMVGADLSLAIAI
VVMTGVIGANFGATVLDALGVRDPAARGLAQGGSAHGLGTAAMVNEPTAF
AFSAVAMALTATA
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mRNA from alignment at H-canaliculatus_F_contig10033:465..1694+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig10033.69.1 ID=mRNA_H-canaliculatus_F_contig10033.69.1|Name=mRNA_H-canaliculatus_F_contig10033.69.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=1230bp|location=Sequence derived from alignment at H-canaliculatus_F_contig10033:465..1694+ (Hapterophycus canaliculatus Oshoro5f female)
GGGGATCATTTTGGTGCTGACTGTTCGCGCAGGTTGCTCGGACTCCCCAC
GGCCCTCCGACTAGCGACCCTGTCGCGCAACATCACTTCCCCATTGGCGA
TGGCTATCTGCTCCATGGTGGGAGCCGACCTCTCCTTAGCGATTGCTATC
GTGGTGATGACGGGCGTGATCGGGGCTAACTTCGGGGCGACGGTGCTGGA
TGCTCTCGGGTACGTACGCGCAGTCCACCGTGAGGGGTTAAGGCCACGGC
CAAAACAAGGTCGGTGTGTGCGCGCTCGGAAATCGTAGGGTTACCCATAT
CCCGATGCTGCGTTGATCGCGGGAAACTTCGACGACCTTGTTTGTCTTCG
AGGGCGACGGGGCGCGTGCGCTTGCCATGCCCGCCTCTGAAGAACGGTTC
CAGCAGTGGTGAAAGGCCGTATTTTCTGATTTCGGCCCTTTCTTTCCTTA
ATACTTCGAAGTAGTTGTTTTTGTTGCGCACCATGTTGACAAGCTTCCAC
AAGGTATGCAGAGCACAAATTAGTGCTTAGTCTGCCAAAACCAAAAAAAG
GAAACATGAAGGAACAAACAGGGAAAAATATACCTTCGAATCGAAAAAAA
CTAAGCTTACCTTCCTCCCGGAAATGAAATCTCCCTTTTCAGACCGTTTG
CGCACGCTTCTGAGTGGACAAATAAAAAAAACAACGCGGATTCGAACCCC
CAGCCTTTCCTATGCAGATGAACGGAAGCCTCCATTTCACCACTACAGTA
AGGCACACAGCACTCCCTTCTCGCCCCCTCCCCGTTATTTACCCTTGCTT
TTTACCTGCTAAACAGAACCAAACTACAAAGTACGGAGTGAAGAGTAAAG
AGCCTCGGATACATCAGGTAGTCGGACCTGGGGCGCTACGCAGATGAAAG
GGTAGTGATGATACTCGTGCCTCTTGGATGATATCTCTTACATGTCCTCC
GCCCCCTTGTACGTCGCCCTCCCCTCCTGGCGCTCGCCTGTCGACCCCCA
CGAAATATTTCGCCCACCAAAACCGACTTCCGTAACTACCGCCGCTACCA
CGCGTGGGCATCATCATCGCCACCGCCGCCGCCGCCGCCGCCGTTGGTAG
GGTGAGAGACCCCGCAGCGCGAGGCCTGGCGCAAGGCGGAAGTGCGCACG
GCCTGGGCACCGCCGCCATGGTCAACGAGCCCACGGCTTTCGCATTTTCG
GCGGTGGCCATGGCCCTCACGGCAACTGCT
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig10033:465..1694+

>mRNA_H-canaliculatus_F_contig10033.69.1 ID=mRNA_H-canaliculatus_F_contig10033.69.1|Name=mRNA_H-canaliculatus_F_contig10033.69.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=678bp|location=Sequence derived from alignment at H-canaliculatus_F_contig10033:465..1694+ (Hapterophycus canaliculatus Oshoro5f female)
GGGGATCATTTTGGTGCTGACTGTTCGCGCAGGTTGCTCGGACTCCCCAC
GGCCCTCCGACTAGCGACCCTGTCGCGCAACATCACTTCCCCATTGGCGA
TGGCTATCTGCTCCATGGTGGGAGCCGACCTCTCCTTAGCGATTGCTATC
GTGGTGATGACGGGCGTGATCGGGGCTAACTTCGGGGCGACGGTGCTGGA
TGCTCTCGGGGGGATCATTTTGGTGCTGACTGTTCGCGCAGGTTGCTCGG
ACTCCCCACGGCCCTCCGACTAGCGACCCTGTCGCGCAACATCACTTCCC
CATTGGCGATGGCTATCTGCTCCATGGTGGGAGCCGACCTCTCCTTAGCG
ATTGCTATCGTGGTGATGACGGGCGTGATCGGGGCTAACTTCGGGGCGAC
GGTGCTGGATGCTCTCGGGGTGAGAGACCCCGCAGCGCGAGGCCTGGCGC
AAGGCGGAAGTGCGCACGGCCTGGGCACCGCCGCCATGGTCAACGAGCCC
ACGGCTTTCGCATTTTCGGCGGTGGCCATGGCCCTCACGGCAACTGCTGG
TGAGAGACCCCGCAGCGCGAGGCCTGGCGCAAGGCGGAAGTGCGCACGGC
CTGGGCACCGCCGCCATGGTCAACGAGCCCACGGCTTTCGCATTTTCGGC
GGTGGCCATGGCCCTCACGGCAACTGCT
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