mRNA_H-canaliculatus_F_contig10718.686.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig10718.686.1
Unique NamemRNA_H-canaliculatus_F_contig10718.686.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
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BLAST of mRNA_H-canaliculatus_F_contig10718.686.1 vs. uniprot
Match: A0A6H5KER7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KER7_9PHAE)

HSP 1 Score: 159 bits (402), Expect = 5.410e-47
Identity = 74/93 (79.57%), Postives = 84/93 (90.32%), Query Frame = 1 
Query:    4 EEDDFNINVGRALDYLAADVPLMFSAAPRLQIFTPEIRLKDPVGELCHGRRLYGALHTSLRVFGAIAPTRPRVSVTSIMFYPEKREIELKWTI 282
            ++ +FNINVGRA+DYLAADV LMFS APRL+IFTP++RLKDPVGELCHGRRLYGALHTSLRV  A+  + PRV VTSIMFYPEKREIELKWT+
Sbjct:  101 DDHEFNINVGRAMDYLAADVALMFSTAPRLEIFTPDVRLKDPVGELCHGRRLYGALHTSLRVLAAVTTSSPRVGVTSIMFYPEKREIELKWTM 193
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BLAST of mRNA_H-canaliculatus_F_contig10718.686.1 vs. uniprot
Match: A0A4D9CWK3_9STRA (Uncharacterized protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9CWK3_9STRA)

HSP 1 Score: 71.6 bits (174), Expect = 1.470e-12
Identity = 35/91 (38.46%), Postives = 56/91 (61.54%), Query Frame = 1 
Query:   10 DDFNINVGRALDYLAADVPLMFSAAPRLQIFTPEIRLKDPVGELCHGRRLYGALHTSLRVFGAIAPTRPRVSVTSIMFYPEKREIELKWTI 282
            D+F IN+G+ALD+L  DVPL+F   P L I+T ++RL+D       G+ +Y  ++ SLR+     P  P V V +I + P ++ IE+++ I
Sbjct:  299 DNFTINLGKALDHLRVDVPLLFEREPDLSIYTEDVRLRDHARIYASGKFMYQMVYFSLRLARIFMPMPPLVEVLNIRWCPARQSIEVRFQI 389
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BLAST of mRNA_H-canaliculatus_F_contig10718.686.1 vs. uniprot
Match: A0A7S2R9L1_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2R9L1_9STRA)

HSP 1 Score: 70.5 bits (171), Expect = 2.940e-12
Identity = 34/96 (35.42%), Postives = 60/96 (62.50%), Query Frame = 1 
Query:    4 EED---DFNINVGRALDYLAADVPLMFSAAPRLQIFTPEIRLKDPVGELCHGRRLYGALHTSLRVFGAIAPTRPRVSVTSIMFYPEKREIELKWTI 282
            EED   ++ +NVG+A++ L  DVPLMF +AP + IF   + L D  G++  G+++Y A++ SLRV   +   +P V + S+ +   + EI ++++I
Sbjct:  177 EEDLKRNYTLNVGKAIETLRDDVPLMFRSAPDMDIFADGVVLSDSSGDIVQGKKMYSAIYASLRVARRLTLAQPEVQILSLRYLEWRSEITVRFSI 272
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BLAST of mRNA_H-canaliculatus_F_contig10718.686.1 vs. uniprot
Match: A0A7S2BP96_9STRA (Hypothetical protein n=2 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2BP96_9STRA)

HSP 1 Score: 55.1 bits (131), Expect = 9.620e-7
Identity = 27/67 (40.30%), Postives = 39/67 (58.21%), Query Frame = 1 
Query:    4 EEDDFNINVGRALDYLAADVPLMFSAAPRLQIFTPEIRLKDPVGELCHGRRLYGALHTSLRVFGAIA 204
            E  +FN+NVG A+D L +D+P +   AP L IF  ++R+ DP GE   G   Y  ++  LR   +IA
Sbjct:   50 EAQEFNLNVGSAIDTLRSDIPSLLHKAPDLSIFRDDVRVFDPNGEKLRGIAQYSQMYRVLRGMSSIA 116
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig10718.686.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A6H5KER7_9PHAE5.410e-4779.57Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A4D9CWK3_9STRA1.470e-1238.46Uncharacterized protein n=2 Tax=Monodopsidaceae Ta... [more]
A0A7S2R9L1_9STRA2.940e-1235.42Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A7S2BP96_9STRA9.620e-740.30Hypothetical protein n=2 Tax=Florenciella parvula ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig10718contigH-canaliculatus_F_contig10718:3529..4341 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionProtein of unknown function DUF2358
Ec32 orthologEc-05_003630.1
Exons2
Model size282
Cds size282
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928734.7708929-CDS-H-canaliculatus_F_contig10718:3528..36511622928734.7708929-CDS-H-canaliculatus_F_contig10718:3528..3651Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10718 3529..3651 +
1696845543.9734898-CDS-H-canaliculatus_F_contig10718:3528..36511696845543.9734898-CDS-H-canaliculatus_F_contig10718:3528..3651Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10718 3529..3651 +
1622928734.7849765-CDS-H-canaliculatus_F_contig10718:4182..43411622928734.7849765-CDS-H-canaliculatus_F_contig10718:4182..4341Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10718 4183..4341 +
1696845543.981839-CDS-H-canaliculatus_F_contig10718:4182..43411696845543.981839-CDS-H-canaliculatus_F_contig10718:4182..4341Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10718 4183..4341 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig10718.686.1prot_H-canaliculatus_F_contig10718.686.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig10718 3529..4341 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig10718.686.1

>prot_H-canaliculatus_F_contig10718.686.1 ID=prot_H-canaliculatus_F_contig10718.686.1|Name=mRNA_H-canaliculatus_F_contig10718.686.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=94bp
DEEDDFNINVGRALDYLAADVPLMFSAAPRLQIFTPEIRLKDPVGELCHG
RRLYGALHTSLRVFGAIAPTRPRVSVTSIMFYPEKREIELKWTI
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mRNA from alignment at H-canaliculatus_F_contig10718:3529..4341+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig10718.686.1 ID=mRNA_H-canaliculatus_F_contig10718.686.1|Name=mRNA_H-canaliculatus_F_contig10718.686.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=813bp|location=Sequence derived from alignment at H-canaliculatus_F_contig10718:3529..4341+ (Hapterophycus canaliculatus Oshoro5f female)
GATGAAGAAGACGACTTCAACATCAACGTCGGGAGAGCTCTGGACTACCT
CGCCGCGGATGTTCCGCTCATGTTCTCGGCGGCACCAAGACTGCAGATTT
TCACACCGGAAATTCGTCTGAAGGTACTGAAGTATTCTCTGCAGTCAAGC
ACGCATGCATGCTCGTTGTCATGCCATCGAAGAACCTCTTTAGCAGGGGA
GTAGTGACGCAAACGTAAACATAGTTCGTGAGGTGTTGCAGCTTCTCTCT
CGAGAACGCTCATCTCCGTTGGGAGAGTCCACTCAAATTCTCTCCTGGAG
AAAACTCTTTTTTCTGAATGAATCCCTGCAAATTTGCTTGCTGGACCGCT
ACAGGAATACTGAGGAGTATGGTTGCTTTGGTCACTTGCGGTGTGTTTTT
TGCGCCCACCCTTGTCACCGAATGACCTCAAGATGCGTAGATTCTCCCGA
CGTTCGCTGTTTTGAGTCGCTGAAGTCTAATCCCAACCTGATGATCCCTC
CCCCCTACCCTCACCCCGAGACACACGCAACCCTGCCCGTCCGCGTGCTC
TGTGCTTGCTCTTCCTCCTGTTTAGCACATGCTACTCCCACCGAACCGAA
CAAGTGCGCGTCGTCCACGCATCAAAGTCGTTTTGTCGCTCGTGTTGGTT
GCAGGATCCGGTGGGAGAGCTCTGCCACGGGCGAAGGCTCTACGGCGCCC
TGCACACGTCTCTCCGGGTGTTCGGAGCCATCGCCCCCACGAGACCTCGC
GTCAGCGTGACCAGCATCATGTTCTACCCAGAGAAGCGGGAGATCGAACT
CAAGTGGACCATC
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig10718:3529..4341+

>mRNA_H-canaliculatus_F_contig10718.686.1 ID=mRNA_H-canaliculatus_F_contig10718.686.1|Name=mRNA_H-canaliculatus_F_contig10718.686.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=564bp|location=Sequence derived from alignment at H-canaliculatus_F_contig10718:3529..4341+ (Hapterophycus canaliculatus Oshoro5f female)
GATGAAGAAGACGACTTCAACATCAACGTCGGGAGAGCTCTGGACTACCT
CGCCGCGGATGTTCCGCTCATGTTCTCGGCGGCACCAAGACTGCAGATTT
TCACACCGGAAATTCGTCTGAAGGATGAAGAAGACGACTTCAACATCAAC
GTCGGGAGAGCTCTGGACTACCTCGCCGCGGATGTTCCGCTCATGTTCTC
GGCGGCACCAAGACTGCAGATTTTCACACCGGAAATTCGTCTGAAGGATC
CGGTGGGAGAGCTCTGCCACGGGCGAAGGCTCTACGGCGCCCTGCACACG
TCTCTCCGGGTGTTCGGAGCCATCGCCCCCACGAGACCTCGCGTCAGCGT
GACCAGCATCATGTTCTACCCAGAGAAGCGGGAGATCGAACTCAAGTGGA
CCATCGATCCGGTGGGAGAGCTCTGCCACGGGCGAAGGCTCTACGGCGCC
CTGCACACGTCTCTCCGGGTGTTCGGAGCCATCGCCCCCACGAGACCTCG
CGTCAGCGTGACCAGCATCATGTTCTACCCAGAGAAGCGGGAGATCGAAC
TCAAGTGGACCATC
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