mRNA_H-canaliculatus_F_contig10709.680.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig10709.680.1
Unique NamemRNA_H-canaliculatus_F_contig10709.680.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
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BLAST of mRNA_H-canaliculatus_F_contig10709.680.1 vs. uniprot
Match: A0A6H5KWK7_9PHAE (ELMO domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KWK7_9PHAE)

HSP 1 Score: 222 bits (566), Expect = 1.690e-64
Identity = 104/119 (87.39%), Postives = 114/119 (95.80%), Query Frame = 1 
Query:    1 QALALCRAQSGGSPSHYPWAVVANNLTLMLAEVLELRADQYAGSRKGYWGVFDRRGAYFEVFCMAFRLLDHTWTERGAKRSNFGQIIGYTKSVIVDLLESNPPNLPAFMGQADEMGMLR 357
            +AL+LCRAQS G  SHYPWAVVANNLTLMLA+VLE+RA+Q+A SRKGYWGVFDRRGA+FE+FCMAFRLLDHTW ERGAKRSNFGQIIGYTKSVIV+LLESNPPNLPAFMGQA+EMGMLR
Sbjct:  242 KALSLCRAQSVGGSSHYPWAVVANNLTLMLADVLEMRANQFASSRKGYWGVFDRRGAFFEIFCMAFRLLDHTWAERGAKRSNFGQIIGYTKSVIVELLESNPPNLPAFMGQAEEMGMLR 360
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BLAST of mRNA_H-canaliculatus_F_contig10709.680.1 vs. uniprot
Match: D8LB26_ECTSI (ELMO domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LB26_ECTSI)

HSP 1 Score: 223 bits (569), Expect = 4.380e-63
Identity = 104/119 (87.39%), Postives = 114/119 (95.80%), Query Frame = 1 
Query:    1 QALALCRAQSGGSPSHYPWAVVANNLTLMLAEVLELRADQYAGSRKGYWGVFDRRGAYFEVFCMAFRLLDHTWTERGAKRSNFGQIIGYTKSVIVDLLESNPPNLPAFMGQADEMGMLR 357
            +AL+LCRAQS G  SHYPWAVVANNLTLMLA+VLE+RA+Q+A SRKGYWGVFDRRGA+FE+FCMAFRLLDHTW ERGAKRSNFGQIIGYTKSVIV+LLESNPPNLPAFMGQA+EMGMLR
Sbjct:  410 KALSLCRAQSAGGSSHYPWAVVANNLTLMLADVLEMRANQFASSRKGYWGVFDRRGAFFEIFCMAFRLLDHTWAERGAKRSNFGQIIGYTKSVIVELLESNPPNLPAFMGQAEEMGMLR 528
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BLAST of mRNA_H-canaliculatus_F_contig10709.680.1 vs. uniprot
Match: A0A835YT59_9STRA (ELMO/CED-12 family-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YT59_9STRA)

HSP 1 Score: 92.4 bits (228), Expect = 2.780e-16
Identity = 49/110 (44.55%), Postives = 63/110 (57.27%), Query Frame = 1 
Query:   10 ALCRAQSGGSPSH-YPWAVVANNLTLMLAEVLELRADQYAGSRKGYWGVFDRRGAYFEVFCMAFRLLDHTWTERGAKRSNFGQIIGYTKSVIVDLLESNPPNLPAFMGQA 336
            AL RA +  +P   YP+AVVA N+TLMLA+VL L    Y  +R  YWG+F+R  A+ ++FC AFR LD  W ER A R  FGQ            L S P  + AF+ +A
Sbjct:  409 ALLRANAARAPPRRYPFAVVARNVTLMLADVLRLGGRGYCEARASYWGLFERADAFEQLFCWAFRRLDAVWAERNASRDAFGQXXXXXXXXXXXALGSGPETVAAFLERA 518
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig10709.680.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6H5KWK7_9PHAE1.690e-6487.39ELMO domain-containing protein n=1 Tax=Ectocarpus ... [more]
D8LB26_ECTSI4.380e-6387.39ELMO domain-containing protein n=1 Tax=Ectocarpus ... [more]
A0A835YT59_9STRA2.780e-1644.55ELMO/CED-12 family-domain-containing protein n=1 T... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig10709contigH-canaliculatus_F_contig10709:1642..4471 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score177.2
Seed ortholog evalue3.6e-42
Seed eggNOG ortholog2880.D8LB26
EggNOG free text desc.ELMO domain-containing protein
EggNOG OGsKOG2998@1,KOG2998@2759
COG Functional cat.Z
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons3
Model size1504
Cds size276
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig10709.680.1prot_H-canaliculatus_F_contig10709.680.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig10709 2786..4387 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928733.5278847-UTR-H-canaliculatus_F_contig10709:1641..27851622928733.5278847-UTR-H-canaliculatus_F_contig10709:1641..2785Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig10709 1642..2785 -
1696845543.409264-UTR-H-canaliculatus_F_contig10709:1641..27851696845543.409264-UTR-H-canaliculatus_F_contig10709:1641..2785Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig10709 1642..2785 -
1622928733.583393-UTR-H-canaliculatus_F_contig10709:4387..44711622928733.583393-UTR-H-canaliculatus_F_contig10709:4387..4471Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig10709 4388..4471 -
1696845543.4552352-UTR-H-canaliculatus_F_contig10709:4387..44711696845543.4552352-UTR-H-canaliculatus_F_contig10709:4387..4471Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig10709 4388..4471 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928733.5429063-CDS-H-canaliculatus_F_contig10709:2785..28901622928733.5429063-CDS-H-canaliculatus_F_contig10709:2785..2890Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10709 2786..2890 -
1696845543.4203277-CDS-H-canaliculatus_F_contig10709:2785..28901696845543.4203277-CDS-H-canaliculatus_F_contig10709:2785..2890Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10709 2786..2890 -
1622928733.5586498-CDS-H-canaliculatus_F_contig10709:3736..38111622928733.5586498-CDS-H-canaliculatus_F_contig10709:3736..3811Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10709 3737..3811 -
1696845543.433219-CDS-H-canaliculatus_F_contig10709:3736..38111696845543.433219-CDS-H-canaliculatus_F_contig10709:3736..3811Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10709 3737..3811 -
1622928733.5718577-CDS-H-canaliculatus_F_contig10709:4291..43871622928733.5718577-CDS-H-canaliculatus_F_contig10709:4291..4387Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10709 4292..4387 -
1696845543.4434764-CDS-H-canaliculatus_F_contig10709:4291..43871696845543.4434764-CDS-H-canaliculatus_F_contig10709:4291..4387Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10709 4292..4387 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig10709.680.1

>prot_H-canaliculatus_F_contig10709.680.1 ID=prot_H-canaliculatus_F_contig10709.680.1|Name=mRNA_H-canaliculatus_F_contig10709.680.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=92bp
MLAEVLELRADQYAGSRKGYWGVFDRRGAYFEVFCMAFRLLDHTWTERGA
KRSNFGQIIGYTKSVIVDLLESNPPNLPAFMGQADEMGMLR*
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mRNA from alignment at H-canaliculatus_F_contig10709:1642..4471-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig10709.680.1 ID=mRNA_H-canaliculatus_F_contig10709.680.1|Name=mRNA_H-canaliculatus_F_contig10709.680.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=2830bp|location=Sequence derived from alignment at H-canaliculatus_F_contig10709:1642..4471- (Hapterophycus canaliculatus Oshoro5f female)
CAGGCGCTAGCGCTGTGCCGAGCACAATCGGGGGGAAGCCCCTCTCACTA
CCCGTGGGCTGTGGTGGCGAACAACCTCACCCTGATGCTGGCCGAGGTTT
TGGAGCTGAGGGCGGACCAGTACGCGGGGAGTCGGAAAGGATACTGGGGC
GTGTTCGACAGACGTGGGGCCTACTTCGAGGTGGGCGTTGCGACCTGATG
ACAGCGAAATTGTTCCTCGTTCTTTTTGTTGTTGTTGAGGTGGTGGTGAT
GGTGGTGGCAGTGTTGGTAGTTACAGCGTCAGAGTTGGCGTTAGCGTCGA
TCTCTCCCAATGCCCCGAAACAAGTCTCCATCGAAGGAGCCTTGCCGAAT
CGGGAGGGATCTGAGATTTACGCGATTTTTTTTTGTTGGCTCGTTTTTCT
TAATTTTGCCGAGCGTTGTCGTACACAGCGAAGGAACGGCCAAGTTAGTC
CAACAGCATGCGGGACGCTGTTTGTCTACTCGCCCAATTGTGTTGGATGG
TTAGCATCGCTGGGATACGGTCTGAGGGATCGGCAAGACCCTTGGACCGT
TTTTTTTCAATCGTTTTTTTTTCATTTTTTTTTTCCATCTTTTTTTTTGT
CGTTTCCGACGCTCCCCGGACGCTTCTCCCCCGGTTTCGTGCCTCGCGCC
TCCTCGTCAGGTGTTCTGCATGGCTTTCAGGCTGCTCGACCACACGTGGA
CCGAGCGAGGGGCGAAGCGGAGCAACTTCGGACAGGTGCGCAGACGACGG
AAGCCGCGAGCCATCCGCCTCGTCCGACCCGCGCGACGCCGTGCATGCGT
CGACGCTCGTGAGGCTCCGTCGCGTCGCGAAATCTCGCGATCTCCTCAAA
AAACGAGCGACTCGTCGCTCATGTTTCTGACGCACGGAGGCATGAAGGGT
AGCCCAGACACCCCGGCTCGTGCCGGCGGCTCGCGGGTTAACCCCACGTT
ACCGTTCGGCGCGTGTGCGGGGGAGGTGATGCTGGAACGGTTGGACACTG
TGCTTCCTTCATTCAGGACGTGCCTGGCACAGCTCGTTGGTACAGGGGCG
TTGCTTGGGGGTGCTTTTGCAGCCACAGCGTTTTGAAACCGCGTGCTTTT
TCTGGCTGCAAACGCGATGGTCGCCTCGAGTCAGCGCGATCATCGGTCCT
CAGATTTCTCTCTGCCCTACGAAGCGCACGGGACCCTTCGATCATGTTTT
TTTCTTTCAGCTAGGATAGGTCTCAATCCAACCCCCCCCCGAAGTTTCAC
CAAGATTGATGGTTCGGAACATGTAGTGTTGACACCGGATGTGAAATTCT
GCAACACCTCCTTTCGGCACACAGGTGCATCGAGCTGAAGGCTTGAAAGG
GCAAAGGCTGAAGAAGCTTCACTCAAATTGTAGAAGAGATGGTAACCTCG
CAGCGAATGCTTCGCCGACTCTTACGGACGTGGGTCAGCCCTACATCAAA
GTGAGGCGCCGAGGCTGGCTGGGGCCATAACCAGCATTTTTTGTAAGCCG
TTCCCTCGCAACCCCGCCCCTCCCCCCCGCCCCCGTGCCACCCCCCGCCG
CCCGTTATCTTTCCGCTTTTGCCGCCTGCAGATCATCGGGTACACGAAGA
GCGTTATCGTAGATCTGCTGGAGAGCAACCCTCCGAACCTCCCGGCATTT
ATGGGACAGGCGGACGAAATGGGGATGCTCAGATAACGACGTGTTTGGAC
GTTTCTTCTCGGAGTTTCGTGCTCCGTTCTCCGTCTTTCTTCCTGACCGT
GGCCCTCGCCCGGCATTTCTAGGGGGGGGGGCTCTGAGGATGCTGAAGTT
CTTCGTCGTTTTTCCTTCGGAAACATCGTCGGGGTACACGTTCGACCGCT
CAAGTCCGTCTGGGCTTACTTCTTGAAGCTTTTGGAACCCTCCCCTGTGT
TTTCGCCCGTCATCGTCCAACTGTTCGGCGTCTCGGTCAAGAGGCCACCG
CAAGCCGTGCAAGTGAGCAGAGTTTGGACGCAGGCTTACAGCAGCGGCGC
GGCCTTCGTACGACGTTTGTCTGTGCACTGTAGAAGAGTGAAATCTACGG
TGATGGGTCTGGACTTTTAACGCCATTTCGCAACGGAGAAACCGGGTGCA
CGGCTTCAAACAATCCCTACACGTTCGCCGCTTGTGGGGGCGGTGGTGAC
GGTGACAATCGGTGTGCTCATTGACTTCACCGTCGTGTGTACAAGATCCA
CGTTCCGGCTCGTATTTTACAGGCGCCTCGCTTCGAACCTTGCAGATTTT
CAAGTGGAGCGATAAGGGGGTTTCTCATCCACCTGTAGAACAACGTACAG
AGTTGCGAACGCTGCCTCCGCCCGAAACAATAATGTGAAGAAAAACGTAA
CAGCAATACCGTAGGGACACTTCCTGAGGTACGTCGTGCGAGGCGTATCT
CGAGGCTTGCGTTGACCTCCAAACGATGAGGGTTCGTTGATGTGTAAGGT
TGGCACAAACGCGCGAACAGAAATGATTAGTTCAGGCTGTTACGTGCTCA
GTCACGGCTTGCCTGCAGAGGGCCATTTTAGGGGGCGAGGGATGCTCGTC
GACAGAAAAGCCAGATGTCAAGCGTTTCGCGCGTCGGCGGTGCTCTGAGC
GGTAGCGGGCGCGGCTTCTCCAGTCGTTGTGTTGCGAGCAATCGAGGCAC
AACGGAGCTCCCAGACATGGCGCCGGTTTCTCCTCAGGGCGAGAAAGGGG
GCCGATCGCCTTGCGCGCGCCGAACCGAGCAAGTTCTTGCTCATGCCTGT
GGACGAAGAACGGGAAGGTTACGGGCAACCTGGTAAAAGAAAGAAGCGAT
GAAAAAAGGTGTGTGAGAGGCCCGTAGAGA
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig10709:1642..4471-

>mRNA_H-canaliculatus_F_contig10709.680.1 ID=mRNA_H-canaliculatus_F_contig10709.680.1|Name=mRNA_H-canaliculatus_F_contig10709.680.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=552bp|location=Sequence derived from alignment at H-canaliculatus_F_contig10709:1642..4471- (Hapterophycus canaliculatus Oshoro5f female)
ATGCTGGCCGAGGTTTTGGAGCTGAGGGCGGACCAGTACGCGGGGAGTCG
GAAAGGATACTGGGGCGTGTTCGACAGACGTGGGGCCTACTTCGAGATGC
TGGCCGAGGTTTTGGAGCTGAGGGCGGACCAGTACGCGGGGAGTCGGAAA
GGATACTGGGGCGTGTTCGACAGACGTGGGGCCTACTTCGAGGTGTTCTG
CATGGCTTTCAGGCTGCTCGACCACACGTGGACCGAGCGAGGGGCGAAGC
GGAGCAACTTCGGACAGGTGTTCTGCATGGCTTTCAGGCTGCTCGACCAC
ACGTGGACCGAGCGAGGGGCGAAGCGGAGCAACTTCGGACAGATCATCGG
GTACACGAAGAGCGTTATCGTAGATCTGCTGGAGAGCAACCCTCCGAACC
TCCCGGCATTTATGGGACAGGCGGACGAAATGGGGATGCTCAGATAAATC
ATCGGGTACACGAAGAGCGTTATCGTAGATCTGCTGGAGAGCAACCCTCC
GAACCTCCCGGCATTTATGGGACAGGCGGACGAAATGGGGATGCTCAGAT
AA
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