mRNA_H-canaliculatus_F_contig1003.67.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig1003.67.1
Unique NamemRNA_H-canaliculatus_F_contig1003.67.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
[Close]
BLAST of mRNA_H-canaliculatus_F_contig1003.67.1 vs. uniprot
Match: D7G4Z4_ECTSI (Acetyl-CoA carboxylase, partial n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G4Z4_ECTSI)

HSP 1 Score: 374 bits (959), Expect = 1.110e-119
Identity = 189/210 (90.00%), Postives = 197/210 (93.81%), Query Frame = 2 
Query:  488 GGVRGLKAVAMTESTDVVSPKDGGGEDKMGEYIKNRGGSLPIRKILIANNGMAGTKAILSMRQWCYLELGDEKAVEFVAMATPEDLLANAEFIRLADAIVEVPGGKNSNNYANVDLIVDTAIKQGVDAVWPGWGHASENPQLPTRLTENGIKFIGPTAPVMSVLGDKIAANILAQTAKVPSIPWSGDGLEAVLTEVRRFRPHSLLPAAVF 1117
            GGVRGLKAVA  ESTDV+SP+  G EDKMGEYIKNRGGSLPIRKILIANNGMAGTKAILSMRQWCYLELGDEKAVEFVAMATPEDLLANAEFIRLADAIVEVPGGKNSNNYANVDLIVDTAIKQGVDAVWPGWGHASENPQLPTRLT+NGIKFIGPTAPVMSVLGDKIAANILAQTAKVPSIPWSGDGLEA LT+     P +++P A+F
Sbjct:   35 GGVRGLKAVAAAESTDVISPQ--GEEDKMGEYIKNRGGSLPIRKILIANNGMAGTKAILSMRQWCYLELGDEKAVEFVAMATPEDLLANAEFIRLADAIVEVPGGKNSNNYANVDLIVDTAIKQGVDAVWPGWGHASENPQLPTRLTDNGIKFIGPTAPVMSVLGDKIAANILAQTAKVPSIPWSGDGLEAKLTD----GPPTIVPPAMF 238
[Close]
BLAST of mRNA_H-canaliculatus_F_contig1003.67.1 vs. uniprot
Match: A0A6H5L0S0_9PHAE (Acetyl-CoA carboxylase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L0S0_9PHAE)

HSP 1 Score: 367 bits (943), Expect = 2.220e-111
Identity = 183/195 (93.85%), Postives = 189/195 (96.92%), Query Frame = 2 
Query:  488 GGVRGLKAVAMTESTDVVSPKDGGGEDKMGEYIKNRGGSLPIRKILIANNGMAGTKAILSMRQWCYLELGDEKAVEFVAMATPEDLLANAEFIRLADAIVEVPGGKNSNNYANVDLIVDTAIKQGVDAVWPGWGHASENPQLPTRLTENGIKFIGPTAPVMSVLGDKIAANILAQTAKVPSIPWSGDGLEAVLTE 1072
            GGVRGLKA+A  ESTDV+SP+  G EDKMGEYIK+RGGSLPIRKILIANNGMAGTKAILSMRQWCYLELGDEKAVEFVAMATPEDLLANAEFIRLADAIVEVPGGKNSNNYANVDLIVDTAIKQGVDAVWPGWGHASENPQLPTRLT+NGIKFIGPTAPVMSVLGDKIAANILAQTAKVPSIPWSGDGLEA LT+
Sbjct:   35 GGVRGLKAIAAAESTDVISPQ--GEEDKMGEYIKSRGGSLPIRKILIANNGMAGTKAILSMRQWCYLELGDEKAVEFVAMATPEDLLANAEFIRLADAIVEVPGGKNSNNYANVDLIVDTAIKQGVDAVWPGWGHASENPQLPTRLTDNGIKFIGPTAPVMSVLGDKIAANILAQTAKVPSIPWSGDGLEAKLTD 227
[Close]
BLAST of mRNA_H-canaliculatus_F_contig1003.67.1 vs. uniprot
Match: A0A7S2B655_9STRA (Hypothetical protein (Fragment) n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2B655_9STRA)

HSP 1 Score: 271 bits (694), Expect = 1.520e-85
Identity = 132/176 (75.00%), Postives = 146/176 (82.95%), Query Frame = 2 
Query:  518 MTESTDVVSPKDGGGEDKMGEYIKNRGGSLPIRKILIANNGMAGTKAILSMRQWCYLELGDEKAVEFVAMATPEDLLANAEFIRLADAIVEVPGGKNSNNYANVDLIVDTAIKQGVDAVWPGWGHASENPQLPTRLTENGIKFIGPTAPVMSVLGDKIAANILAQTAKVPSIPWSG 1045
            M+ +T        G  D + EY++  GG+ PIRK+LIANNGMA TK+ILSMR+W Y ELGDE AV+FVAMATPEDL ANAEFI+LADA VEVP GKNSNNYANVD+IVD A +  VDAVWPGWGHASENP+LPT LTE GIKFIGPTAPVMSVLGDKIAANILAQTA VPSIPWSG
Sbjct:   80 MSLATPASPTTSAGSTDALEEYVQKHGGNRPIRKVLIANNGMAATKSILSMRKWAYFELGDENAVQFVAMATPEDLKANAEFIKLADAYVEVPAGKNSNNYANVDIIVDVAKEYNVDAVWPGWGHASENPKLPTALTELGIKFIGPTAPVMSVLGDKIAANILAQTANVPSIPWSG 255
[Close]
BLAST of mRNA_H-canaliculatus_F_contig1003.67.1 vs. uniprot
Match: A0A836CCC4_9STRA (Acetyl-CoA carboxylase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CCC4_9STRA)

HSP 1 Score: 286 bits (732), Expect = 4.080e-83
Identity = 136/169 (80.47%), Postives = 150/169 (88.76%), Query Frame = 2 
Query:  566 DKMGEYIKNRGGSLPIRKILIANNGMAGTKAILSMRQWCYLELGDEKAVEFVAMATPEDLLANAEFIRLADAIVEVPGGKNSNNYANVDLIVDTAIKQGVDAVWPGWGHASENPQLPTRLTENGIKFIGPTAPVMSVLGDKIAANILAQTAKVPSIPWSGDGLEAVLTE 1072
            D M  Y++  GGSLPIRKILIANNGMA TKAILSMRQWCYLELGDEKA+EFV MATP+DL ANAEFIRL+D I EVPGG N NNYANVDLIV+ A ++ VDAVWPGWGHASENP LP RL+++GIKFIGPT+PVM+VLGDKIAANILAQTAKVPSIPWSGDGL A LT+
Sbjct:   14 DAMAAYVEKHGGSLPIRKILIANNGMAATKAILSMRQWCYLELGDEKAIEFVVMATPDDLAANAEFIRLSDGIAEVPGGSNRNNYANVDLIVELAKRENVDAVWPGWGHASENPALPRRLSDDGIKFIGPTSPVMAVLGDKIAANILAQTAKVPSIPWSGDGLTADLTD 182
[Close]
BLAST of mRNA_H-canaliculatus_F_contig1003.67.1 vs. uniprot
Match: A0A7S2F2I2_9STRA (Acetyl-CoA carboxylase n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2F2I2_9STRA)

HSP 1 Score: 286 bits (731), Expect = 5.560e-83
Identity = 140/196 (71.43%), Postives = 159/196 (81.12%), Query Frame = 2 
Query:  527 STDVVSPKDGGGEDKMGEYIKNRGGSLPIRKILIANNGMAGTKAILSMRQWCYLELGDEKAVEFVAMATPEDLLANAEFIRLADAIVEVPGGKNSNNYANVDLIVDTAIKQGVDAVWPGWGHASENPQLPTRLTENGIKFIGPTAPVMSVLGDKIAANILAQTAKVPSIPWSGDGLEAVLTEVRRFRPHSLLPAAV 1114
            S  +  P +    D + +Y++  GGSLPIRK+LIANNGMA TK+ILSMRQW Y+ELGDEKA+EFVAMATPEDL ANAEFI+LAD+ VEVP GKNSNNYA+VD+IV  A+ +GVDAVWPGWGHASENP LP  L  NGIKFIGPT+ VMSVLGDKIAANILAQTAKVPSIPWSGDGLEAVLT+  R    +   A V
Sbjct:   53 SATISPPSEVAVTDNLSKYVEEHGGSLPIRKVLIANNGMAATKSILSMRQWAYMELGDEKAIEFVAMATPEDLKANAEFIKLADSFVEVPAGKNSNNYASVDVIVKIAVDKGVDAVWPGWGHASENPLLPETLLANGIKFIGPTSSVMSVLGDKIAANILAQTAKVPSIPWSGDGLEAVLTDDGRIPEETFNKAMV 248
[Close]
BLAST of mRNA_H-canaliculatus_F_contig1003.67.1 vs. uniprot
Match: A0A813EQ02_POLGL (Hypothetical protein n=1 Tax=Polarella glacialis TaxID=89957 RepID=A0A813EQ02_POLGL)

HSP 1 Score: 263 bits (671), Expect = 3.650e-82
Identity = 135/193 (69.95%), Postives = 148/193 (76.68%), Query Frame = 2 
Query:  494 VRGLKAVAMTESTDVVSPKDGGGEDKMGEYIKNRGGSLPIRKILIANNGMAGTKAILSMRQWCYLELGDEKAVEFVAMATPEDLLANAEFIRLADAIVEVPGGKNSNNYANVDLIVDTAIKQGVDAVWPGWGHASENPQLPTRLTENGIKFIGPTAPVMSVLGDKIAANILAQTAKVPSIPWSGDGLEAVLTE 1072
            V    A A  E  D V  K    + K+ EY+ ++GG+  +RKILIANNGMA TKAILSMRQW YLELG +   EFVAMAT EDL ANAEFIRLAD  +EVP GKN NNYANVDLI + A  QGVDAVWPGWGHASENP+LPT+L   GI FIGPTAPVMSVLGDK+AANILAQTA VPSIPWSGDGL A L E
Sbjct:  107 VTACSATATLEKGDAVVTKADAAK-KLEEYVFSKGGNKVLRKILIANNGMAATKAILSMRQWAYLELGLDNVFEFVAMATREDLEANAEFIRLADTFIEVPAGKNVNNYANVDLICEIAKSQGVDAVWPGWGHASENPKLPTKLKSMGITFIGPTAPVMSVLGDKVAANILAQTAGVPSIPWSGDGLVAELNE 298
[Close]
BLAST of mRNA_H-canaliculatus_F_contig1003.67.1 vs. uniprot
Match: A0A0B4L7Y6_9STRA (Acetyl-CoA carboxylase n=1 Tax=Nannochloropsis oculata TaxID=43925 RepID=A0A0B4L7Y6_9STRA)

HSP 1 Score: 280 bits (716), Expect = 5.650e-81
Identity = 136/185 (73.51%), Postives = 154/185 (83.24%), Query Frame = 2 
Query:  515 AMTESTDVVSPKDGGGEDKMGEYIKNRGGSLPIRKILIANNGMAGTKAILSMRQWCYLELGDEKAVEFVAMATPEDLLANAEFIRLADAIVEVPGGKNSNNYANVDLIVDTAIKQGVDAVWPGWGHASENPQLPTRLTENGIKFIGPTAPVMSVLGDKIAANILAQTAKVPSIPWSGDGLEAVLT 1069
            A T +   +SP+    +D +  Y+K+RGG+L IRK+LIANNGMA TK+ILSMRQW Y+ELGD++A+EFV MATPEDL ANAEFIRLAD  VEVPGG N NNYANVDLIV  A ++GVDAVWPGWGHASENP+LP  L + GIKFIGPT PVMSVLGDKIAANILAQTAKVPSIPWSGDGL A LT
Sbjct:   87 AATMAPPALSPEAQKKKDAVAAYVKSRGGNLAIRKVLIANNGMAATKSILSMRQWAYMELGDDRAIEFVVMATPEDLNANAEFIRLADRFVEVPGGSNKNNYANVDLIVQMAQREGVDAVWPGWGHASENPRLPNTLKQLGIKFIGPTGPVMSVLGDKIAANILAQTAKVPSIPWSGDGLTAELT 271
[Close]
BLAST of mRNA_H-canaliculatus_F_contig1003.67.1 vs. uniprot
Match: I2CQP5_NANGC (Acetyl-CoA carboxylase n=1 Tax=Nannochloropsis gaditana (strain CCMP526) TaxID=1093141 RepID=I2CQP5_NANGC)

HSP 1 Score: 279 bits (713), Expect = 1.420e-80
Identity = 138/189 (73.02%), Postives = 154/189 (81.48%), Query Frame = 2 
Query:  503 LKAVAMTESTDVVSPKDGGGEDKMGEYIKNRGGSLPIRKILIANNGMAGTKAILSMRQWCYLELGDEKAVEFVAMATPEDLLANAEFIRLADAIVEVPGGKNSNNYANVDLIVDTAIKQGVDAVWPGWGHASENPQLPTRLTENGIKFIGPTAPVMSVLGDKIAANILAQTAKVPSIPWSGDGLEAVLT 1069
            L A  M   +  +SP     +D +  Y+K+RGG+L IRK+LIANNGMA TK+ILS+RQW Y+ELGD+KA+EFV MATPEDL ANAEFIRLAD  VEVPGG N NNYANVDLIV  A ++GVDAVWPGWGHASENP+LP  L E GIKFIGPT PVMSVLGDKIAANILAQTAKVPSIPWSGDGL A LT
Sbjct:   87 LSAATMAPPS-TLSPAAQKKKDAVAAYVKSRGGNLGIRKVLIANNGMAATKSILSIRQWAYMELGDDKAIEFVVMATPEDLNANAEFIRLADRFVEVPGGSNKNNYANVDLIVQVAEREGVDAVWPGWGHASENPRLPNTLKEMGIKFIGPTGPVMSVLGDKIAANILAQTAKVPSIPWSGDGLTAELT 274
[Close]
BLAST of mRNA_H-canaliculatus_F_contig1003.67.1 vs. uniprot
Match: K8EIK1_9CHLO (Acetyl-CoA carboxylase n=1 Tax=Bathycoccus prasinos TaxID=41875 RepID=K8EIK1_9CHLO)

HSP 1 Score: 277 bits (709), Expect = 4.870e-80
Identity = 137/204 (67.16%), Postives = 157/204 (76.96%), Query Frame = 2 
Query:  506 KAVAMTESTDVVSPKDGGGEDKMGEYIKNRGGSLPIRKILIANNGMAGTKAILSMRQWCYLELGDEKAVEFVAMATPEDLLANAEFIRLADAIVEVPGGKNSNNYANVDLIVDTAIKQGVDAVWPGWGHASENPQLPTRLTENGIKFIGPTAPVMSVLGDKIAANILAQTAKVPSIPWSGDGLEAVLTEVRRFRPHSLLPAAVF 1117
            KAV   E + + S  D     K+ EY+ N+GG   IRK+L+ANNGMA TKAILSMR+W Y ELGDE A++FV MATPED+ ANAEFIR AD  +EVPGGKN NNYANVDLI + A+++GVD VWPGWGHASENP+LPT L +NGI+FIGPTAPVMSVLGDKIAANILAQTAKVPSIPWSGDGL A LT      P   +P   F
Sbjct:   70 KAVREPEQSSMASASD-----KLAEYVANKGGKRVIRKVLVANNGMAATKAILSMRRWAYNELGDENAIKFVVMATPEDIGANAEFIRYADDFIEVPGGKNVNNYANVDLITEIAVREGVDGVWPGWGHASENPKLPTALKKNGIQFIGPTAPVMSVLGDKIAANILAQTAKVPSIPWSGDGLVANLT------PEGTIPQETF 262
[Close]
BLAST of mRNA_H-canaliculatus_F_contig1003.67.1 vs. uniprot
Match: A0A1E7FNT7_9STRA (Acetyl-CoA carboxylase n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7FNT7_9STRA)

HSP 1 Score: 277 bits (708), Expect = 6.590e-80
Identity = 133/178 (74.72%), Postives = 153/178 (85.96%), Query Frame = 2 
Query:  512 VAMTESTDVVSPKDGGGEDKMGEYIKNRGGSLPIRKILIANNGMAGTKAILSMRQWCYLELGDEKAVEFVAMATPEDLLANAEFIRLADAIVEVPGGKNSNNYANVDLIVDTAIKQGVDAVWPGWGHASENPQLPTRLTENGIKFIGPTAPVMSVLGDKIAANILAQTAKVPSIPWSG 1045
            ++  E++DV +      ED    Y+K RGG+L I+K+LIANNGMA TK+I+SMRQW Y+ELGDEKA+EFVAMA+PED+ ANAEF+RLAD+ VEVPGG N NNYANVDLIV  A++QGVDAVWPGWGHASENPQLPT L +NGIKFIGPTAPVMSVLGDKIAANILAQTAKVPSIPWSG
Sbjct:   53 LSTLEASDVTTSVTTSVED----YVKGRGGNLAIKKVLIANNGMAATKSIMSMRQWAYMELGDEKAIEFVAMASPEDINANAEFVRLADSYVEVPGGSNKNNYANVDLIVKLAVEQGVDAVWPGWGHASENPQLPTNLAKNGIKFIGPTAPVMSVLGDKIAANILAQTAKVPSIPWSG 226
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig1003.67.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G4Z4_ECTSI1.110e-11990.00Acetyl-CoA carboxylase, partial n=1 Tax=Ectocarpus... [more]
A0A6H5L0S0_9PHAE2.220e-11193.85Acetyl-CoA carboxylase n=1 Tax=Ectocarpus sp. CCAP... [more]
A0A7S2B655_9STRA1.520e-8575.00Hypothetical protein (Fragment) n=1 Tax=Florenciel... [more]
A0A836CCC4_9STRA4.080e-8380.47Acetyl-CoA carboxylase n=1 Tax=Tribonema minus Tax... [more]
A0A7S2F2I2_9STRA5.560e-8371.43Acetyl-CoA carboxylase n=1 Tax=Dictyocha speculum ... [more]
A0A813EQ02_POLGL3.650e-8269.95Hypothetical protein n=1 Tax=Polarella glacialis T... [more]
A0A0B4L7Y6_9STRA5.650e-8173.51Acetyl-CoA carboxylase n=1 Tax=Nannochloropsis ocu... [more]
I2CQP5_NANGC1.420e-8073.02Acetyl-CoA carboxylase n=1 Tax=Nannochloropsis gad... [more]
K8EIK1_9CHLO4.870e-8067.16Acetyl-CoA carboxylase n=1 Tax=Bathycoccus prasino... [more]
A0A1E7FNT7_9STRA6.590e-8074.72Acetyl-CoA carboxylase n=1 Tax=Fragilariopsis cyli... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig1003contigH-canaliculatus_F_contig1003:25269..31488 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Taxonomic scopeViridiplantae
Seed ortholog score275.4
Seed ortholog evalue3e-71
Seed eggNOG ortholog41875.XP_007511713.1
KEGG rclassRC00040,RC00253,RC00367
KEGG koko:K11262
KEGG ReactionR00742,R04385,R04386
KEGG Pathwayko00061,ko00254,ko00620,ko00640,ko01100,ko01110,ko01212,ko04152,ko04910,ko04922,map00061,map00254,map00620,map00640,map01100,map01110,map01212,map04152,map04910,map04922
KEGG ModuleM00082
EggNOG free text desc.acetyl-coa carboxylase
EggNOG OGs37HYK@33090,COG0439@1,KOG0368@2759
EC2.1.3.15,6.3.4.14,6.4.1.2
COG Functional cat.I
Best tax levelViridiplantae
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000
Hectar predicted targeting categorychloroplast
Exons5
Model size1117
Cds size873
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig1003.67.1prot_H-canaliculatus_F_contig1003.67.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig1003 25513..31488 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928631.7872682-UTR-H-canaliculatus_F_contig1003:25268..255121622928631.7872682-UTR-H-canaliculatus_F_contig1003:25268..25512Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1003 25269..25512 +
1696845503.5938983-UTR-H-canaliculatus_F_contig1003:25268..255121696845503.5938983-UTR-H-canaliculatus_F_contig1003:25268..25512Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1003 25269..25512 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928631.8083208-CDS-H-canaliculatus_F_contig1003:25512..255851622928631.8083208-CDS-H-canaliculatus_F_contig1003:25512..25585Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1003 25513..25585 +
1696845503.610497-CDS-H-canaliculatus_F_contig1003:25512..255851696845503.610497-CDS-H-canaliculatus_F_contig1003:25512..25585Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1003 25513..25585 +
1622928631.822879-CDS-H-canaliculatus_F_contig1003:28483..287851622928631.822879-CDS-H-canaliculatus_F_contig1003:28483..28785Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1003 28484..28785 +
1696845503.6212578-CDS-H-canaliculatus_F_contig1003:28483..287851696845503.6212578-CDS-H-canaliculatus_F_contig1003:28483..28785Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1003 28484..28785 +
1622928631.8408258-CDS-H-canaliculatus_F_contig1003:29721..298411622928631.8408258-CDS-H-canaliculatus_F_contig1003:29721..29841Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1003 29722..29841 +
1696845503.639609-CDS-H-canaliculatus_F_contig1003:29721..298411696845503.639609-CDS-H-canaliculatus_F_contig1003:29721..29841Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1003 29722..29841 +
1622928631.8618279-CDS-H-canaliculatus_F_contig1003:30652..307721622928631.8618279-CDS-H-canaliculatus_F_contig1003:30652..30772Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1003 30653..30772 +
1696845503.6517148-CDS-H-canaliculatus_F_contig1003:30652..307721696845503.6517148-CDS-H-canaliculatus_F_contig1003:30652..30772Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1003 30653..30772 +
1622928631.876256-CDS-H-canaliculatus_F_contig1003:31230..314881622928631.876256-CDS-H-canaliculatus_F_contig1003:31230..31488Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1003 31231..31488 +
1696845503.6621673-CDS-H-canaliculatus_F_contig1003:31230..314881696845503.6621673-CDS-H-canaliculatus_F_contig1003:31230..31488Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1003 31231..31488 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig1003.67.1

>prot_H-canaliculatus_F_contig1003.67.1 ID=prot_H-canaliculatus_F_contig1003.67.1|Name=mRNA_H-canaliculatus_F_contig1003.67.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=291bp
MHKRRHGGGAFAAFLISRLVGNGSAFVPSALTPKGAGSVGGGGGGNAIQS
SARSSSFATAASSSSSSCFLPTARGSVCYGAGGVRGLKAVAMTESTDVVS
PKDGGGEDKMGEYIKNRGGSLPIRKILIANNGMAGTKAILSMRQWCYLEL
GDEKAVEFVAMATPEDLLANAEFIRLADAIVEVPGGKNSNNYANVDLIVD
TAIKQGVDAVWPGWGHASENPQLPTRLTENGIKFIGPTAPVMSVLGDKIA
ANILAQTAKVPSIPWSGDGLEAVLTEVRRFRPHSLLPAAVF
back to top

mRNA from alignment at H-canaliculatus_F_contig1003:25269..31488+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig1003.67.1 ID=mRNA_H-canaliculatus_F_contig1003.67.1|Name=mRNA_H-canaliculatus_F_contig1003.67.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=6220bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1003:25269..31488+ (Hapterophycus canaliculatus Oshoro5f female)
CTCCAGTCCGGAAGAGAGATACTGAGGGAGGGGGAGAGAGCAAAGGAGAG
GGAGAGGGAGACCGGCGCCGAAAGCTCGAAGGCAGATTTCGAGGAACGGC
CTGGCGGTACTATACAGCCGCACCGCCGCCGTCGGCAGGCACGCCCGCGG
CCGCCGCTCGACTAGCTGGAACAGCCCTCTCGCCGGCTGCTTCTCAACCG
AACGTCTATCACACTGGCCCTCAGCGGCGCTAGCGGCAGACGCCATGCAT
AAACGCAGGCATGGGGGGGGTGCCTTCGCAGCATTCCTGATATCCCGGTT
GGTCGGGAATGGATCAGGTGAGACAGCATACCTGCTGCGGGGCGCGTTGT
GTTTTTTTGTGTTGCTCTTGATGCTGTGATCCTGTCCCGGAATTTTGGGA
TATGTCCCCCGTCCTCCTTGTTCGGTATCCAGCAAACGTGCGAGAGGCGT
CCGCATGCACAGCAGGCGGCCTGGCAGCTCATGCCCGCAGCTACCTCCCC
ATGCATGTACACACGTTCCGGGGGGCCAGGCACGATTCCTCCCGCGACCT
GCTGCTTGCAGCGCTCTGTTGGGTTCAAGCCAGCAGCTCGTTTGTTCCTG
TTTCCAACAGCACTTGGGGTGTGTTGCCGTGCCTTGTGTCTTGTCCTCCG
TCTCGCGTCTGTCGTCTGCTCTCCTCGTACGCACCCTACATGCACCTCCT
TTCACCTCTCTCGCTCTCCATTCCCACTCCCTGGACACCCGAACACCGAC
GATGATGGCAGCACCAGCGGCGAAAGTCCTTCGCCTAGAAAGCGTCCGCA
GGGAATGGCAACCTCGCCCCTTCCCCCTGCGGCGAAAAATGACCGACCTC
GAGGACAAGCATCAAGTCAGCGGATTGCGCATGCAGACACACGCCCTTTT
CCTTGAAAAAAAAAAAAGGAGGGCAGGAAAGCCAAACAAACAACAGCCGC
GAAAGTATGATATTTTTGAAAGTTCCTCGCCAGCCCCCGCCAAGCCCCCT
TCTTCGTTACTTGCTGTACGTTACACCGTGAGGAGCAGGACAGCAGCAGC
GACCCAGCTGTTTCCAACGGTGCAGCTCCCGTGGCTGGGCCGTGCGGTCT
AGCCGGATGGCGCGGAAGCATGCGGTCCAGCCGTGCGCACACACGGACGG
GAGCTCGCCGCCTCCAGTGCATAGCGTTCTCCCCAGCAACGATTTGCGAT
GTTCGCCCTACTGCTCTGTGTGCGGGTACAAGTACGAAGACGAAAAATCG
TTCTTCAAGTTGCGGACGGGATTTTTTGATTTTTTCTCTAGACTGAAGGC
GAGAAGGGGAAATGTTGCAGAACGAGTACCCTGCTGTACGTACTGCTGTA
GGGGAAACAGCCTCTCGACATGTTCTACTTGAGTACCAGAGATGAAGATG
TCGGCGATGACGGGGTGCAGACCCTTCCGCCTCATCGCTTGCTGGCGGGA
TTGGATTCTACGAGCACCCAGGTGTACCACAGTCCACCTCTAGTCGAAGA
GAACCCGTGGCAACAAAAGAAGCAACATACAGCACAGCAAAGCACAGCAG
CAGCAGCAGTGTCCTGCGACGGGCGCTGTCCAAGCCGCCCGTTTGTCGTT
GGTACGTGAGGCTGGATGGGACTCGCCTTTCTTTTTTTTTCCAAATCATG
ACGTCGATTCATCCTGAACTAAAACCATGCACAACACACAAGTTTTCCCT
TGATTGATGACTATCAGAAGTTTATTCCCCTCGCATCTCCGCCGTATATT
TTTTAGCTGCTCAGCTACACGCAAACCAGGTCCTTGGAACTACGGGAGTG
TTGTGTGCCTTGAACAGCATCTTATTTATTTATCCACAGGTGCTGCCGTG
TCTCCCCTGTGGCACAAGATATACAGCTCGGGCGTCAACTCTTGCGGAGT
CCGAGTAAACCCGTAAAACGGGTTCGTAAGAGGGGAACGAAACACACATC
CGCACGAGCAGTTATTTGCCTAGATCTACGGATGCTGCATCCCTGTTTCG
CAGCAGCAGGGTAAAGGTGGCACCGCGCTCAGCAAGCGCGTCGTCGCGAG
CGAGCGGTCACCTGTCTCCAGTCCCTCTGCACGGTACGTGTGCAGCAGTG
CAGCCGTGCAGGCGAGGGGAGAGGGGGGGATCTACGAGAGCGACCCTTTA
AGCTCCGCCGCATTCACCTCCCCTTAGATGCTTCCGAGACCCCGCTTCCC
GCGCGTCTGTTTGGTACGTCGTGTGTGTCCTTGCTCCTCGACCGAAACTA
CGCGTCTCGAACACGGTCTCGTACACTCACGGCAGAAGCGGTTTCGGTTC
TGGCCTTCGTCTCGGGGTTTGACGCCGCCCCCCTCCTCACGGCTCCCCGC
TTTCGAACTTACACGTTCAGTACCTGGTACATCCCTGGGATCGTCTCGCG
CAGCCGGCGGTCGGCCGCAGCAGTGCAACTCTGCCGTTGTCTTTTTGTCT
TACGGCCACGCACAGAAAGGCAAACGAAGGACCTCTCTGCGCCTTGTTCA
AAGTTATTTTCTTCTCGTGTACGCTTGATTTCTTGGGCGCGAAGCGGGTG
AGGCGGCCTTTCCGAACGCCGACAGCATCTCACCCCTCCCAAGGCTCGAA
GCTCTTGGTATCGTCGAAAACCATTGTTGCTCAGTTGGTCGCCTTGGTGT
TTCGCCCCCGGTATTTTTCGTCCTCTGTTGTCCGTGCTGGTGGGGATGCT
GTTTCCCGTTTTTTCCGCATGTCTCTCTCCGCTTGGGCCTCTTGTGCAGG
GATGCACATGTGTCTGGCCCGTGTGTCCTTCGATTCTCTACCACGGTATC
GTGCAAGTTTTCAGTGTTGAATCATCGCGTCGAGGGCACTCTACTCTTAG
GGCAAGGACGGCGGCGGAACCAGCGACGACGACGGCAACAACAACAACAG
CCACAAACCTGACGTATCAAAAAAGATGCCGCCAAACAACGGCAGCGGCG
GTGGCAAGGAAGGGAAGGAGACAAAGCATGCGCCCTTACACCGGGGGTAG
GGGATGGGTGACGAACGCTCGGCGCTTAGGCGGCTCACGAGCCATCCTCA
GCAACTCCCCCTGCAGTGATCCTCTTCCTCCTCCCGCCGCCCCCGCCGCG
CTTCATCGGGCCCAAGAACGCAGTCCAAGTAACCCCACCCCTCACCCCAA
CCCCAACCCCACCCCCCCCCCCCCAACCGATGTTTCGTCCCCGTCGTCCT
CTTGCTCCCGTTCAGCCTTCGTGCCGTCGGCGCTGACACCCAAGGGGGCC
GGTAGCGTTGGGGGCGGCGGCGGCGGCAACGCCATCCAGAGCTCCGCACG
CTCGTCGAGCTTTGCGACGGCAGCCTCTTCGTCTTCCTCCTCTTGCTTTC
TCCCAACCGCGAGGGGCTCCGTGTGCTACGGCGCGGGAGGGGTCAGGGGG
CTGAAGGCGGTTGCCATGACGGAGAGCACGGACGTGGTGTCTCCCAAGGA
CGGCGGCGGCGAGGACAAGATGGGGGAGTACATCAAGAACCGCGGCGGGT
CTCTTCCGATCAGAAAGGTGCCTATGCGCGCGCGTGCGTGTCTTCGTGCG
TTCGTGCGTGAGATTGTTCGCGTGTGAGCGTGTTCAATCGCATCGGCACG
GCTCGCAGCCGCAAAGAATTGATGAAAAGACGCCGGTGTAATGATTCACG
TGAGCGTGTAAGCGAGTTCAACACCTATCACCGGCACACACCCCCCCGCA
GGCTTAAGATCGGTGAGAAGACGTCGGCTATCAGCAGGAGATTTAAAAGC
TACTGCTGTAGCTCTCCTTCTGCAGATGAAAGCTTTCGCCGATTATCGGA
GGCCCCGCGGAAGAGCTGACCTCTCGGACTGTTTTTGTTTGTGTTCGTGG
GTGCGTGGATGCGTGGGTGTGCCAGCGGCGTATCTTTTTCTCTCCTGTAT
CGCTCTGTCTATCGTGCTGTCGTCGCTCTCTTCTGATTGGTTGTTGGGCA
AAAGACGGAATCGTGTGCCGGCATAGACTTTTTCTAGCGAGGGGTGATGC
CTGTGTGTCTCTGTTGTCCATGTGTATGTATGTCTTTGACCGCCTGGCCC
TCTCTTACCCCTCTCTCTCTGTGCGTGTCTGTATGCGTTTGTCTCGCTCC
CGGAGCGGTCGAATGCCGTGTTGTAGTAAATAATGGAAAACGCGAGGCGG
GTAGATGGGTAGGTGCAACGCCCGGCCAGCCATCTAAATGCGAGCAATTG
ACCGCCCTCACGGTCGTCGACGTTCTTGTCGCCGCCGTCGTCGTCGCCGC
CGGGCAAGATGGGGGCGGCGACGATGCGCGCAAAGAGGCCAACGAGAGAG
ATGGCAAGAGAAACATATACTTGAAGAGCTGCATCGCCAGCACCGCAGTC
AAGGCTCCTTCCATCCCCGCCCAGACTCCGACCGTCCTTCCTTGCCCTCG
CTCTGTGCTGACTTCTCTGTGTCTCTTTTTCTCCCTACGATTCTCCCGAC
CAGATCCTGATCGCCAACAACGGCATGGCCGGCACCAAGGCCATCCTGTC
GATGCGGCAGTGGTGCTACCTGGAGCTGGGGGACGAGAAGGCGGTGGAGT
TTGTGGCCATGGCGACCCCGGAGGTAAGGAAAGAAAACAAAAAAAAATGC
GCACGCGACGCTTGCCCTTTCAGCGCAGAGATATCGTGACGCGCGGTACA
CAGGCGTGTGGAGTAGGCGATGCCGAAGAGAAGAGACGTTTCGTTTCCGA
CCACGACACACCCCTAACGCACGGGGCGAATGCGAGGCCGGGGAAGGGGG
ATCGGGCAGGGTGACAAAAAAAACAAGCTTCTTGTTTTCGAGACGCGACG
AACGGAGCCGGGAAGAGTCGAGGTAGGTCTCTCTCCGCCAAGCCCGAACT
TTCTCGCGTGCGGACGTTGCCCTGCGATTTCCGTGTCCCCATGTCTTTCG
GTGCTGCTGCTGCTGTTGGTGGTGGTGGTGTTGTTGTTGGAGGAGGTGAA
GCCCTTTGCCTCTCTTGGGAAGGTTGCCGACGCTTATCCACTCTAAGGCG
GTGCACGCACAAGAGGAGAACATGAGGATGGGCACGGGGGCAGGGGGGGG
AGGGGGGGGGGGCACGCGGAGGACGTGTTTGTCCTTGATGGTTGTCGATG
TTTGCGGTCTTCTGTTAAGCCGGGGTAGCTGGCGGTTCGCCGGCGAGCGT
GGATGGCAAGCGGAGGTGGCAAAATACAGCAGGCTCGTACGGAAAGAGGT
CTCACGAGGTTTGATCGCAGAGGTTCAGCGAGCACGTTTGCAGCGGTAGT
TGTGTAGAAGGCCGATGGTGTGGTTGTCAAAGATGCGTGGGAGGTTGGCC
GCGGTGTGTTAACGTCGATTCGTTTTCGTACCAATGGATGCCGCCCCCGC
ACCATCTCCGCCGCTCCTCCCGCTGCTTCCCCAGGACCTGCTGGCAAACG
CGGAGTTCATCCGGCTGGCGGACGCCATCGTCGAGGTGCCCGGGGGCAAG
AACAGCAACAACTACGCCAACGTCGACCTTATCGTGGACACCGCCATCAA
GCAGGTGCGTCGCTGGGCAGGCCTCGTAGACTTGCGCACGGCGGCGCCGA
GCGGCGCGCCGGTTTCGCCAAAAACCCTGGCGTCGCGCCAACAAACCCTG
GCGGTGTGTAGTCCGTGGGTGCCCCTCCCCGCTCTGCCGTGCTCGTTCTC
AGCCCCGAAGTGTCCACCAGTGGCACACAGAAGAGGAGGAGGGCCTTCTT
TTTTCATCGTTTTACGAATATTTTTGACCGCTTCCACCCCCCAACATCCT
GTTATCTTTTCCCTCAAGTAGCCCCCTTGACCCCCCCTCCGGGCGGCGAA
AGTCGTCCCACCACTTTCCTACTGATCCGCAATTTCATCCTGTCACTCGC
ATGGAACCCTCACTGAATGGGATTGACTAAAGCCCCTTGAGATGGACAGT
GTCTCAGGTCTGTGTTCCTTCGGTGTCGCTGACTTGTTTTGTAAAAACGT
GGAAAACAACAGGGGGTGGACGCCGTGTGGCCCGGATGGGGGCACGCCTC
CGAGAACCCTCAGCTGCCCACTCGCCTGACAGAGAACGGGATCAAGTTCA
TCGGTCCCACCGCTCCTGTGATGTCGGTGCTCGGCGACAAGATCGCCGCC
AATATCCTGGCTCAGACCGCCAAGGTGCCGTCGATCCCCTGGAGCGGCGA
CGGGCTCGAGGCCGTCCTGACCGAGGTGCGTAGGTTTCGTCCGCATTCGT
TGTTGCCTGCTGCTGTTTTT
back to top

Coding sequence (CDS) from alignment at H-canaliculatus_F_contig1003:25269..31488+

>mRNA_H-canaliculatus_F_contig1003.67.1 ID=mRNA_H-canaliculatus_F_contig1003.67.1|Name=mRNA_H-canaliculatus_F_contig1003.67.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=1746bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1003:25269..31488+ (Hapterophycus canaliculatus Oshoro5f female)
ATGCATAAACGCAGGCATGGGGGGGGTGCCTTCGCAGCATTCCTGATATC
CCGGTTGGTCGGGAATGGATCAGATGCATAAACGCAGGCATGGGGGGGGT
GCCTTCGCAGCATTCCTGATATCCCGGTTGGTCGGGAATGGATCAGCCTT
CGTGCCGTCGGCGCTGACACCCAAGGGGGCCGGTAGCGTTGGGGGCGGCG
GCGGCGGCAACGCCATCCAGAGCTCCGCACGCTCGTCGAGCTTTGCGACG
GCAGCCTCTTCGTCTTCCTCCTCTTGCTTTCTCCCAACCGCGAGGGGCTC
CGTGTGCTACGGCGCGGGAGGGGTCAGGGGGCTGAAGGCGGTTGCCATGA
CGGAGAGCACGGACGTGGTGTCTCCCAAGGACGGCGGCGGCGAGGACAAG
ATGGGGGAGTACATCAAGAACCGCGGCGGGTCTCTTCCGATCAGAAAGCC
TTCGTGCCGTCGGCGCTGACACCCAAGGGGGCCGGTAGCGTTGGGGGCGG
CGGCGGCGGCAACGCCATCCAGAGCTCCGCACGCTCGTCGAGCTTTGCGA
CGGCAGCCTCTTCGTCTTCCTCCTCTTGCTTTCTCCCAACCGCGAGGGGC
TCCGTGTGCTACGGCGCGGGAGGGGTCAGGGGGCTGAAGGCGGTTGCCAT
GACGGAGAGCACGGACGTGGTGTCTCCCAAGGACGGCGGCGGCGAGGACA
AGATGGGGGAGTACATCAAGAACCGCGGCGGGTCTCTTCCGATCAGAAAG
ATCCTGATCGCCAACAACGGCATGGCCGGCACCAAGGCCATCCTGTCGAT
GCGGCAGTGGTGCTACCTGGAGCTGGGGGACGAGAAGGCGGTGGAGTTTG
TGGCCATGGCGACCCCGGAGATCCTGATCGCCAACAACGGCATGGCCGGC
ACCAAGGCCATCCTGTCGATGCGGCAGTGGTGCTACCTGGAGCTGGGGGA
CGAGAAGGCGGTGGAGTTTGTGGCCATGGCGACCCCGGAGGACCTGCTGG
CAAACGCGGAGTTCATCCGGCTGGCGGACGCCATCGTCGAGGTGCCCGGG
GGCAAGAACAGCAACAACTACGCCAACGTCGACCTTATCGTGGACACCGC
CATCAAGCAGGACCTGCTGGCAAACGCGGAGTTCATCCGGCTGGCGGACG
CCATCGTCGAGGTGCCCGGGGGCAAGAACAGCAACAACTACGCCAACGTC
GACCTTATCGTGGACACCGCCATCAAGCAGGGGGTGGACGCCGTGTGGCC
CGGATGGGGGCACGCCTCCGAGAACCCTCAGCTGCCCACTCGCCTGACAG
AGAACGGGATCAAGTTCATCGGTCCCACCGCTCCTGTGATGTCGGTGCTC
GGCGACAAGATCGCCGCCAATATCCTGGCTCAGACCGCCAAGGTGCCGTC
GATCCCCTGGAGCGGCGACGGGCTCGAGGCCGTCCTGACCGAGGTGCGTA
GGTTTCGTCCGCATTCGTTGTTGCCTGCTGCTGTTTTTGGGGTGGACGCC
GTGTGGCCCGGATGGGGGCACGCCTCCGAGAACCCTCAGCTGCCCACTCG
CCTGACAGAGAACGGGATCAAGTTCATCGGTCCCACCGCTCCTGTGATGT
CGGTGCTCGGCGACAAGATCGCCGCCAATATCCTGGCTCAGACCGCCAAG
GTGCCGTCGATCCCCTGGAGCGGCGACGGGCTCGAGGCCGTCCTGACCGA
GGTGCGTAGGTTTCGTCCGCATTCGTTGTTGCCTGCTGCTGTTTTT
back to top