mRNA_H-canaliculatus_F_contig10691.663.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig10691.663.1
Unique NamemRNA_H-canaliculatus_F_contig10691.663.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
BLAST of mRNA_H-canaliculatus_F_contig10691.663.1 vs. uniprot
Match: D8LD89_ECTSI (Prenyltransferase, UbiA family, Putative 4-hydroxybenzoate octaprenyltransferase (Partial) (Fragment) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LD89_ECTSI)

HSP 1 Score: 320 bits (821), Expect = 2.140e-108
Identity = 185/228 (81.14%), Postives = 205/228 (89.91%), Query Frame = 1
Query:    1 KPAPHLGAYWNILRPHNIPSSFGLVAAGALVSSHAVEALLDPKVLLTAFAAASVSVGSCVLNDWFDIELDRVNDPERPLVTGEVMPVHALGIGIGFLLAAVVSASAVHPAALQATIVASVALTSAYTPLLKPIPLMKNFVVAMXXXXXXXXXXXXXXXGVAATLTPTVLTFFVIAHREILMDITDVDGDREGGVRTLPVIMGRKAALGLAAVLLSAGVGAAGVGVVAG 684
            K +P+L AYW ILRP+NIP+SFGLVAAGALV+SH   AL +PKVLLTAFAAA+VSVGSCVLNDWFDIELDRVN+PERPLVTGEV+PVHALGIG+ FLLAAV SAS V+PAALQATIVASVALT AYTPLLKPIPL+KNFVVAM  XXXXXXXXXXXX GVA+TLTP+VLTFFVI HRE+LMDI DV+GDRE GVRTLPV+MGR+AAL  A  LLSAGV AAGVG++ G
Sbjct:   10 KKSPNLSAYWEILRPNNIPASFGLVAAGALVASHTAVALFEPKVLLTAFAAAAVSVGSCVLNDWFDIELDRVNEPERPLVTGEVVPVHALGIGVAFLLAAVASASFVNPAALQATIVASVALTLAYTPLLKPIPLVKNFVVAMVIXXXXXXXXXXXXAGVASTLTPSVLTFFVIGHREVLMDIADVEGDREAGVRTLPVLMGRQAALVFATALLSAGVVAAGVGILEG 237          
BLAST of mRNA_H-canaliculatus_F_contig10691.663.1 vs. uniprot
Match: A0A6H5LBF2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LBF2_9PHAE)

HSP 1 Score: 320 bits (820), Expect = 9.210e-106
Identity = 172/224 (76.79%), Postives = 191/224 (85.27%), Query Frame = 1
Query:   13 HLGAYWNILRPHNIPSSFGLVAAGALVSSHAVEALLDPKVLLTAFAAASVSVGSCVLNDWFDIELDRVNDPERPLVTGEVMPVHALGIGIGFLLAAVVSASAVHPAALQATIVASVALTSAYTPLLKPIPLMKNFVVAMXXXXXXXXXXXXXXXGVAATLTPTVLTFFVIAHREILMDITDVDGDREGGVRTLPVIMGRKAALGLAAVLLSAGVGAAGVGVVAG 684
            +L AYW ILRP+NIP+SFGLVAAGALV+SH   ALL+PKVLLTAFAAA+VSVGSCVLNDWFDIELDRVN+PERPLVTGEV+PVHALGIG+ FLLAAV SAS V+PAALQATIVASVALT AYTPLLKPIPL+KNFVVAM               GVA+TLTP+VLTFFVI HRE+LMDI DV+GDRE GVRTLPV+MGR+AAL  A  LLS GVGAAGVG++ G
Sbjct:  132 NLSAYWEILRPNNIPASFGLVAAGALVASHTAVALLEPKVLLTAFAAAAVSVGSCVLNDWFDIELDRVNEPERPLVTGEVVPVHALGIGVAFLLAAVASASFVNPAALQATIVASVALTLAYTPLLKPIPLVKNFVVAMVIAAAIGAGGLAAGAGVASTLTPSVLTFFVIGHREVLMDIADVEGDREAGVRTLPVLMGRQAALVFATALLSVGVGAAGVGILEG 355          
BLAST of mRNA_H-canaliculatus_F_contig10691.663.1 vs. uniprot
Match: A0A2V0P9S4_9CHLO (Geranylgeranylglycerol-phosphate geranylgeranyltransferase n=1 Tax=Raphidocelis subcapitata TaxID=307507 RepID=A0A2V0P9S4_9CHLO)

HSP 1 Score: 119 bits (298), Expect = 2.430e-28
Identity = 76/207 (36.71%), Postives = 109/207 (52.66%), Query Frame = 1
Query:   19 GAYWNILRPHNIPSSFGLVAAGALVSSHAVEALLDPKVLLTAFAAASVSVGSCVLNDWFDIELDRVNDPERPLVTGEVMPVHALGIGIGFLLAAVVSASAVHPAALQATIVASVALTSAYTPLLKPIPLMKNFVVAMXXXXXXXXXXXXXXXGVAAT--LTPTVL-TFFVIAHREILMDITDVDGDREGGVRTLPVIMGRKAALGLA 630
            GA   + R HN+  S  LVA GA   S ++ AL  P V L A  +  ++V SCV+ND+FD+ +D  N P++PL +G +    AL +        ++ A  + P  L++ +  S A T  YTP+ K +  +KN  VA                G A    L P VL  F  I +REILMD+TD +GD   G++TLPV++G +AAL  A
Sbjct:   74 GALLRLARIHNLAPSTLLVAVGACAGSGSLAALRSPVVWLMALLSGGIAVSSCVVNDYFDLRVDLRNAPDKPLASGAITTDAALLLSSALYCGVLIVACFMEPTQLRSIVALSAAATLLYTPIFKRLTAVKNATVAAVIALAPLAGALAAGAGEAGARRLLPAVLWAFGGILYREILMDVTDAEGDAANGIKTLPVVLGPRAALAAA 280          
BLAST of mRNA_H-canaliculatus_F_contig10691.663.1 vs. uniprot
Match: L1JHR6_GUITC (Uncharacterized protein (Fragment) n=1 Tax=Guillardia theta (strain CCMP2712) TaxID=905079 RepID=L1JHR6_GUITC)

HSP 1 Score: 114 bits (286), Expect = 5.790e-28
Identity = 81/209 (38.76%), Postives = 114/209 (54.55%), Query Frame = 1
Query:   40 RPHNIPSSFGLVAAGALVSSHAVEALLDPKVLLTAFAAASVSVGSCVLNDWFDIELDRVNDPERPLVTGEVMPVHAL-GIGIGFLLAAVVSASAVHPAALQATIVASVALTSAYTPLLKPIPLMKNFVVA-MXXXXXXXXXXXXXXXGVAATLTPTVLTFFVIAHREILMDITDVDGDREGGVRTLPVIMGRKAALGLAAVLLSAGVGA 660
            RP NIP+  GL  AG+L +S ++  L DP V L A  +ASV VGS ++ND+FD           P+  G V P  AL      +L++   +   +    L+A +  S+ LT  YTPLLK +  +KN VVA +                + +TL P++  F +I  +E+LMDI DV GD E G+RT+PV++G K A  LA  LLSAG+ A
Sbjct:    4 RPQNIPAELGLSLAGSLFASRSLACLADPLVWLVALFSASVGVGSMLINDYFDYRSGADAYKSNPMAEGTVHPEQALLAASSWYLMSFFFACILLESFQLRALVSVSLLLTFLYTPLLKGVLFLKNLVVAFVIAQAIVLGGLAVGDVRMQSTLLPSLYMFCLILWQEVLMDIRDVRGDAEAGIRTIPVVLGCKFAALLA--LLSAGLAA 210          
BLAST of mRNA_H-canaliculatus_F_contig10691.663.1 vs. uniprot
Match: A0A0D2MBQ7_9CHLO (Digeranylgeranylglyceryl phosphate synthase n=1 Tax=Monoraphidium neglectum TaxID=145388 RepID=A0A0D2MBQ7_9CHLO)

HSP 1 Score: 112 bits (280), Expect = 3.310e-26
Identity = 72/201 (35.82%), Postives = 111/201 (55.22%), Query Frame = 1
Query:   34 ILRPHNIPSSFGLVAAGALVSS-HAVEALLDPKVLLTAFAAASVSVGSCVLNDWFDIELDRVNDPERPLVTGEVMPVH-ALGIGIGFLLAAVVSASAVHPAALQATIVASVALTSAYTPLLKPIPLMKNFVVAMXXXXXXXXXXXXXXXGVAAT---LTPTVLTFFVIAHREILMDITDVDGDREGGVRTLPVIMGRKAAL 621
            + R HN+  SF LV  GA   S   + AL  P V L +  +  ++V SCV ND+FD+++DR N P +PL +G V+P+  AL +      A +++A  + P+ L++ I  S   T  YTP+ K +  +KN  VA+               G A     L  T+  F  +  REI+MD+TD++GDR  G++TLPV++G++ AL
Sbjct:   20 LARVHNLLPSFLLVMVGAWAGSGRDLAALRAPGVWLMSLLSGGIAVSSCVFNDYFDVQVDRANAPHKPLASG-VLPLDIALLLSSSVYCAVLITACFMEPSQLRSIIALSAGATLLYTPVFKKLTAIKNATVAVVIALAPLGGALAAGAGEAGVMRLLPATLFAFSGVMFREIVMDLTDLEGDRAAGIKTLPVMIGQRGAL 219          
BLAST of mRNA_H-canaliculatus_F_contig10691.663.1 vs. uniprot
Match: A0A7J7PTZ1_9CHLO (UbiA prenyltransferase family n=1 Tax=Scenedesmus sp. NREL 46B-D3 TaxID=2650976 RepID=A0A7J7PTZ1_9CHLO)

HSP 1 Score: 111 bits (278), Expect = 1.540e-25
Identity = 76/220 (34.55%), Postives = 112/220 (50.91%), Query Frame = 1
Query:   16 LGAYWNILRPHNIPSSFGLVAAGALVSS-HAVEALLDPKVLLTAFAAASVSVGSCVLNDWFDIELDRVNDPERPLVTGEVMPVHALGIGIGFLLAAVVSASAVHPAALQATIVASVALTSAYTPLLKPIPLMKNFVVAMXXXXXXXXXXXXXXXGVAATLT---PTVLTFFVIAHREILMDITDVDGDREGGVRTLPVIMGRKAALGLAAVLLSAGVGAA 663
            L  Y  + R HN+  S  LV  GA   S H V A+    V L    +  ++V SCV+ND+FD+++D  N P++PL +G + P  AL +        +++A  + P+ L++ +  S A T  YTPL K +  +KN  VA                G A  +     T+  F  +  REILMD+ D +GDR+  V TLPV++G+ AAL  A  +L  G G A
Sbjct:   36 LSTYLKLARIHNLVPSVILVVVGAWAGSGHRVAAVQSISVWLMGLISGGLAVASCVVNDYFDLKIDASNAPDKPLPSGAIAPDAALLLSSLLYCGCLIAACLMEPSRLRSIVAFSAAATLLYTPLFKRLTGVKNATVATVIALAPLAGALAAGAGDAGLMRLMPATLFAFSGVMFREILMDLNDAEGDRQARVMTLPVLLGKPAALLCACTVLLLGSGGA 255          
BLAST of mRNA_H-canaliculatus_F_contig10691.663.1 vs. uniprot
Match: V4HJF9_9EURY (Digeranylgeranylglyceryl phosphate synthase n=1 Tax=Candidatus Halobonum tyrrellensis G22 TaxID=1324957 RepID=V4HJF9_9EURY)

HSP 1 Score: 105 bits (262), Expect = 9.790e-24
Identity = 84/224 (37.50%), Postives = 117/224 (52.23%), Query Frame = 1
Query:   16 LGAYWNILRPHNIPSSFGLVAAGALVSSHAVEALLDPKVLLTAFAAASVSVGSCVLNDWFDIELDRVNDPERPLVTGEVMPVHALGIGIGFLLAAVVSASAVHPAALQATIVASVALTSAYTPLLKPIPLMKNFVVAMXXXXXXXXXXXXXXXGVAAT--LTPTVLTFFVIAH-----REILMDITDVDGDREGGVRTLPVIMGRKAALGLAAVLLSAGVGAAG 666
            +G Y  + RP N  ++  L A GA V   AV       + L A A A  +     +ND+FD E+DR+N P+RP+ +G V P  AL   +   +AAVV+A+A+   AL   +V  +AL  AYT L K +P + N VV                 G AA   L   V T F +A      RE++ D+ DV GDRE G+RTLPV+ G +A + LA V ++A V A+G
Sbjct:    8 VGGYLELTRPGNAVAAAVLTAIGAFV---AVGTSRPVPLALAAVATAFATGAGNAVNDYFDREIDRLNRPDRPIPSGRVSPRGALAFSLALFVAAVVAAAALPRLALAIAVVNLLALL-AYTELFKGLPGVGNAVVGYLTGSTFLF-------GAAAVEGLGSAVWTLFALAAVATFARELVKDVEDVAGDREEGLRTLPVVAGERATVTLAVVAMTAAVAASG 220          
BLAST of mRNA_H-canaliculatus_F_contig10691.663.1 vs. uniprot
Match: A0A2P6TD11_CHLSO (Pyruvate carboxylase n=2 Tax=Chlorella sorokiniana TaxID=3076 RepID=A0A2P6TD11_CHLSO)

HSP 1 Score: 105 bits (262), Expect = 2.290e-22
Identity = 88/216 (40.74%), Postives = 121/216 (56.02%), Query Frame = 1
Query:   16 LGAYWNILRPHNIPSSFGLVAAGALVSS-HAVEALLDPKVLLTAFAAASVSVGSCVLNDWFDIELDRVNDPERPLVTGEVMPVHALGIGIGFLLAAVVSASAVHPAALQATIVASVALTSAYTPLLKPIPLMKNFVVAMXXXXXXXXXXXXXXXG----VAATLTPTVLTFFVIAHREILMDITDVDGDREGGVRTLPVIMGRKAALGLAAVLLSA 648
            L  YW ++R  N   S  LV  GA   +   + AL    V     A+ +V++ SC +ND+FD ++D VNDP++P+ +G +    AL +     +  +  A  V  A ++  +  S ALT  YTP+LK   L+KN VVA XXXXXXXXXXXX   G    + A L P    +  I  REI+MDI D  GD   GV TLPV++G +AALG+   LL+A
Sbjct:   58 LQGYWRLVRGWNALPSMALVLLGAWTGAGKTLLALKHLTVWFMGLASGAVAMASCTINDYFDADIDAVNDPQKPVPSGLIPRDRALLVAALLYIGLLALACLVPNAGVRLIVALSSALTVLYTPVLKKQTLVKNCVVAXXXXXXXXXXXXXAGAGGGPGLRAVLAPCAFLWLGIMFREIMMDIQDRCGDGLAGVLTLPVVLGPRAALGIGFGLLAA 273          
BLAST of mRNA_H-canaliculatus_F_contig10691.663.1 vs. uniprot
Match: A0A6C0HC55_9ZZZZ (Uncharacterized protein n=1 Tax=viral metagenome TaxID=1070528 RepID=A0A6C0HC55_9ZZZZ)

HSP 1 Score: 100 bits (250), Expect = 1.460e-21
Identity = 72/219 (32.88%), Postives = 110/219 (50.23%), Query Frame = 1
Query:    4 PAPHLGAYWNILRPHNI-PSSFGLVAAGALVSSHAVEALLDPKVLLTAFAAASVSVGSCVLNDWFDIELDRVNDPERPLVTGEVMPVHALGIGIGFLLAAVVSASAVH-PAALQATIVASVALTSAYTPLLKPIPLMKNF----VVAMXXXXXXXXXXXXXXXGV----AATLTPTVLTFFVIAHREILMDITDVDGDREGGVRTLPVIMGRKAALGLA 630
            P   + A++ ++RP NI P++      G +V+ H  E L  P  ++  F    +   S +LND FDI LD++N+P RPL+TGEV    A+ +    LL      + ++ P+ LQ  I  ++A    YTP+LK IP +KN     +VA                G           + L FF   + EIL+D+ D+DGD++ G+ TLPVI G+  A  +A
Sbjct:   53 PLQKVSAFFKLIRPSNILPTTLLTFTGGWIVNPHLFELLNTPSFIVGIFDTLLIMSTSMILNDLFDIPLDKINNPRRPLITGEVKVEEAIALS-SILLGLTEYLNFMYLPSNLQIVIHTAIANILIYTPILKKIPFIKNLSCAGLVAFSVFFAGLTANPIIDYGFNKNWGLLAINSQLIFFGSLYTEILLDMCDIDGDKQNGILTLPVIYGKNMAFEIA 270          
BLAST of mRNA_H-canaliculatus_F_contig10691.663.1 vs. uniprot
Match: UPI001CCDB39C (geranylgeranylglycerol-phosphate geranylgeranyltransferase n=1 Tax=Haloprofundus sp. SEDH52 TaxID=2876194 RepID=UPI001CCDB39C)

HSP 1 Score: 99.8 bits (247), Expect = 1.490e-21
Identity = 74/213 (34.74%), Postives = 112/213 (52.58%), Query Frame = 1
Query:   31 NILRPHNIPSSFGLVAAGALVSSHAVEALLDPKVLLTAFAAASVSVGSCVLNDWFDIELDRVNDPERPLVTGEVMPVHALGIGIGFLLAAVVSASAVHPAALQATIVASVALTSAYTPLLKPIPLMKNFVVAMXXXXXXXXXXXXXXXGVAATLTPT-VLTFFVIAH-----REILMDITDVDGDREGGVRTLPVIMGRKAAL--GLAAVLLS 645
            ++ RP N  ++  L A G  V++        P+VL    + A  +     +ND+FD E+DR+N P+R +  G V P  AL   +   LAAVV+A  + P A+   +   +AL  AYT L K +P + N VVA                G AA   P  V+  F++A      RE++ D+ DVDGDRE G+RTLP+++G + AL  G+AA+ ++
Sbjct:   12 DLTRPGNTVAAALLTATGVFVAAPDAIVGGQPEVLAAVASTACATAAGNAVNDYFDHEIDRINRPDRAIPRGAVSPGGALAFSVALFLAAVVAAVVLPPLAIAIAVTNLLALV-AYTKLFKGLPGVGNAVVAYLTGSTFLF-------GAAAVGNPRDVVVLFLLAAVATFTREVVKDVEDVDGDREEGLRTLPIVVGERRALRIGVAAMAIA 216          
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig10691.663.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LD89_ECTSI2.140e-10881.14Prenyltransferase, UbiA family, Putative 4-hydroxy... [more]
A0A6H5LBF2_9PHAE9.210e-10676.79Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A2V0P9S4_9CHLO2.430e-2836.71Geranylgeranylglycerol-phosphate geranylgeranyltra... [more]
L1JHR6_GUITC5.790e-2838.76Uncharacterized protein (Fragment) n=1 Tax=Guillar... [more]
A0A0D2MBQ7_9CHLO3.310e-2635.82Digeranylgeranylglyceryl phosphate synthase n=1 Ta... [more]
A0A7J7PTZ1_9CHLO1.540e-2534.55UbiA prenyltransferase family n=1 Tax=Scenedesmus ... [more]
V4HJF9_9EURY9.790e-2437.50Digeranylgeranylglyceryl phosphate synthase n=1 Ta... [more]
A0A2P6TD11_CHLSO2.290e-2240.74Pyruvate carboxylase n=2 Tax=Chlorella sorokiniana... [more]
A0A6C0HC55_9ZZZZ1.460e-2132.88Uncharacterized protein n=1 Tax=viral metagenome T... [more]
UPI001CCDB39C1.490e-2134.74geranylgeranylglycerol-phosphate geranylgeranyltra... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig10691contigH-canaliculatus_F_contig10691:77..4229 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score318.9
Seed ortholog evalue1.9e-84
Seed eggNOG ortholog2880.D8LD89
EggNOG free text desc.UbiA prenyltransferase family
EggNOG OGs2CYY1@1,2S75T@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons5
Model size690
Cds size690
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig10691.663.1prot_H-canaliculatus_F_contig10691.663.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig10691 77..4229 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928730.3798857-CDS-H-canaliculatus_F_contig10691:76..2431622928730.3798857-CDS-H-canaliculatus_F_contig10691:76..243Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10691 77..243 -
1696845541.8515646-CDS-H-canaliculatus_F_contig10691:76..2431696845541.8515646-CDS-H-canaliculatus_F_contig10691:76..243Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10691 77..243 -
1622928730.4315188-CDS-H-canaliculatus_F_contig10691:862..10461622928730.4315188-CDS-H-canaliculatus_F_contig10691:862..1046Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10691 863..1046 -
1696845541.8657668-CDS-H-canaliculatus_F_contig10691:862..10461696845541.8657668-CDS-H-canaliculatus_F_contig10691:862..1046Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10691 863..1046 -
1622928730.4546971-CDS-H-canaliculatus_F_contig10691:1246..13631622928730.4546971-CDS-H-canaliculatus_F_contig10691:1246..1363Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10691 1247..1363 -
1696845541.8777657-CDS-H-canaliculatus_F_contig10691:1246..13631696845541.8777657-CDS-H-canaliculatus_F_contig10691:1246..1363Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10691 1247..1363 -
1622928730.4813752-CDS-H-canaliculatus_F_contig10691:2198..22911622928730.4813752-CDS-H-canaliculatus_F_contig10691:2198..2291Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10691 2199..2291 -
1696845541.8917637-CDS-H-canaliculatus_F_contig10691:2198..22911696845541.8917637-CDS-H-canaliculatus_F_contig10691:2198..2291Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10691 2199..2291 -
1622928730.4941337-CDS-H-canaliculatus_F_contig10691:4100..42291622928730.4941337-CDS-H-canaliculatus_F_contig10691:4100..4229Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10691 4101..4229 -
1696845541.9014637-CDS-H-canaliculatus_F_contig10691:4100..42291696845541.9014637-CDS-H-canaliculatus_F_contig10691:4100..4229Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10691 4101..4229 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig10691.663.1

>prot_H-canaliculatus_F_contig10691.663.1 ID=prot_H-canaliculatus_F_contig10691.663.1|Name=mRNA_H-canaliculatus_F_contig10691.663.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=230bp
KPAPHLGAYWNILRPHNIPSSFGLVAAGALVSSHAVEALLDPKVLLTAFA
AASVSVGSCVLNDWFDIELDRVNDPERPLVTGEVMPVHALGIGIGFLLAA
VVSASAVHPAALQATIVASVALTSAYTPLLKPIPLMKNFVVAMVIAAAVA
AGGLAAGAGVAATLTPTVLTFFVIAHREILMDITDVDGDREGGVRTLPVI
MGRKAALGLAAVLLSAGVGAAGVGVVAGE*
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mRNA from alignment at H-canaliculatus_F_contig10691:77..4229-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig10691.663.1 ID=mRNA_H-canaliculatus_F_contig10691.663.1|Name=mRNA_H-canaliculatus_F_contig10691.663.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=4153bp|location=Sequence derived from alignment at H-canaliculatus_F_contig10691:77..4229- (Hapterophycus canaliculatus Oshoro5f female)
AAACCCGCCCCGCACCTCGGTGCGTACTGGAATATCCTTAGGCCGCACAA CATCCCGTCCTCCTTTGGGCTCGTCGCGGCCGGAGCGCTGGTTTCCTCTC ACGCCGTCGAGGCTCTCCTGGATCCCAAGGTAATCACGGAGATTGATTGT GCGAGTGTTTTTTCGAAAGATCTTGGGCGGCGGAATCTCGTTCCAATTTC TGCTCTGCGCGAACGAACGAAGAATGAAAAGGTCTTGATACGAGGAACAC GCGTTCTCGGTGTTCTAACCGCCGCCGTTCTCCTATCCTTTGAAATTATT TCCCCGAGCGGACTGCGCACCACTCAGGCAGGAACCTGGTTTCCCCTACT CGGCTACACAGATACGCAATATTCTGCTTTGGATGGGGTGGTACTGAAAC GCTCCGCATCTTCCCTGCGTACCCAGAGGACGTATTTTGTTCACAGGGTT TCCCCGCACACACTCACCTTGCTGCACTTCAATTTGAATACCAGAGAAGG GCGTGACCGAGGGTGATTTAAGGGGCAAACTTCAACGAGGTTGGCGGGTA ATTGAATAGGGTGCGCGATGCGCGTGGCTATTGACACGCCGGCTGGCGGA AGCAACACCAAGTATCAGTAGTTTCTCGTCCTCGTTGTGGTGTTCTATCG CATTTACATTATCTACGAGGAAGTGTCTCGATTTTTGCTTTTTTGCTTGT GTGAGCGTCACGTACGCCGTTGTTAGTGATCTACTGTACGGCGGTACCAA GTGATCTGCGATCCCTTTCACGTATGTAACGTGTCACATGATCGGAGAAC ATCACGTGTTCGGAAACCTTTTTCTCCTCATCGCCCTGGCACGACATCGA CGCCGGTACACCCGCGTTGCAAGTGTTACATCTCAAAACATATACCTGGT ACATTTGTATGAAGTCGGGGATCCATGCAACAAGCAGGAAAACCATCTCG CCAACCCGCCGGCAGTGTTTTTTCTCTGCGCCCTGTTGGTACACTGCCTT TCAGGATGGCGATGCTCCTCGCACAGGTTGCGGCTTGCTTTATGGTTCAA AGGAGGCCTCAGATGTGTGCTAGTGTTTTGCCTTCGTTTTGCCCTGAACT CGACGAATGTTGGGTCGTTGCGACTGGAAGAAGCCATTTTGTTGCTCTTT TAAGGCTCAGCGTTTACCCCCAAGCGGCAGACTTCGTGCGGCTGGTATTT CAAAGGGGTACACGAAATCGCTCGGTGCTTCGGAACAGAGGTTGCGAAAA TGTCAAGAGTTGTTAACGGATTGCGGACGTCTCGGATGCTTGTAGCAGAC ACGACGGCCGGCCACACCAGCAGCCACCCTCTCCACAGAGGCGGATCGAT CACGCTACATGACTCTATCAAATATGTCGGAATTAGCGACCTCAAGTGAG GAGATATAATATTTCTCCCCAAGCCAAATTTGAGCGCCGAGGTCGGGATC GAAGCGCTTCGCCGTGCCAGTTGAAAATGCGACCAGGTTCCAGAGGAACC TGCAAAGTGTATTTTGAGGGGTGGGAGAATTTTGGATCGCACGTACAGCC GGAGCTGTCGAGAAATCACCTTCTGTGCCCATGGCTGTGAGAGCCGTTGA GGCTCCGTCACATCGTTGCGTGATGACAAAACAAAAAAGAAGCAGGGCTC AGAGCCCCCAGCAGCGCGGGTGAGTAAATTTCGTCAAAACAATTTACCGG AGGCGGAACAGGCTGGGCAAGTGCTTTACATATTGGTGGCGTTCGAGACC TCTCCTCTCGACCTCATTCGACTTGTTTTCTCTCCTCGTGCCGTTCTCCT CTCAGACGCTTCTCGATGTCATAGGGTCGAGCGTTCGGCCCTGGAGCACG GCACCTCTCCCTGTAGCTTGGCCCAATTCGCCCTCTTGAGATCGCTCTAT CATTATCGTCAACACCATTAAAATAATTAATAATGCAGGTGCTCTTGACG GCGTTTGCGGCGGCGTCGGTCTCTGTCGGCTCCTGCGTGCTCAACGACTG GTTCGACATCGAGCTCGACCGCGTCAACGATGTGAGGAGGTAGCGAACAA ATAGGTCCTCAAGGTTGACCTTATAAAATACTGGCCACCACTACGTCAAC CCCGTGTATATACCTTGCCCTCAGATACTCGTCTTTTGTGGTACGTGCGC GCAAGCGGTATTTTCTTCGCCTTACGACAGGGATTTGATCAACATTGTTA GCGGAGGTAGACGTCGAGGGGGAACAAGGACGCGACGAAAAGGGACGGGT TTCGTTTCTCTGGCAGAACGCCCGAGAGACCGTTGCCCGTGCATGTCCGT GAGAAAGCAAGGCCCGTATTTCCCGTTTCTAGCAGCAGAACCCCTTTGCG CCCTTTGGTCGGCCGAATGATGTGCATAGTGCATGCAGCACGGTCCTGTC ATCCGATTATTTCCACACAACCAAAGTTACGGGCTACGGCGGATTGCGTG AGAACTATCGAACTTATTTTGTGGGGGGCGCCGCTCTTCTTCTACAACGT CCCACACCTGCCATGCTCTGTCCCTGGGCTTGATTGAGGGACGCGGAGTT GAGCGCCCCTTTTGTTCACGCCCTGCGGGCCGTGCAACAGGGCCGGAGCA GCATGGCCGAGCCGGCTTGAGAGCGGCCCTTTTGGCAAAGGGAGAGATAC CGAAATCGGCCTGGTCTTCTTCCGTACGGTGACCGGATCACAAGCCTTGT TCGCTGTGCTCGTATGTGGCGTAATCGTTATAAGCCTTACTGGCACGACG GCATTAGCCTCGAGCAAACCAGCGTTGAACGATAGCCGCAAGCTTAGATC TGCTATTTTGCCCCAAACAGGCCTGCCCCCCATGCCTTTCCTCCTCCCGC TCTCGATGCTATCCAGCCTGAGAGGCCTCTGGTTACCGGAGAGGTCATGC CTGTCCACGCTCTTGGGATCGGGATAGGTTTTCTGCTCGCGGCGGTGGTT AGTGCCTCGGCGGTGCACCCGGCCGCGTTGCAGGTGGGAAAGCGAAATTG CAGCGTGTGTCTGCCTGCCTTCCTGCCTGCCTGCCTTTCTGTCTATCTGT TTGTCTAGCCGTTTGCCGGTCCTGATTCCTTGTCCATTTCGGTAGTCGAC GTGCGGCGTGAGTCGAGTCCCACGAACGCAACGAGAAGCAACATCGCCGG CAACAACATCAAAACCCACAACCACCACGACAGGCGACCATCGTTGCCTC CGTGGCGCTCACCTCGGCGTACACGCCGCTACTCAAGCCTATCCCGCTCA TGAAGAACTTCGTGGTCGCGATGGTCATCGCTGCCGCGGTCGCCGCCGGC GGTTTGGCTGCGGGCGCCGGGGTCGCGGCCACTCTTACGCCGACGGTGCT CACATTTTTCGTCATCGGTGAGGAGCGTCAGCGATCGCCATGGATGCAGC AAGTCTCCCTAGGGGACTGAGTGCCCCGTGAAGGGTGGTTTTGGTCCAAG GGGAGTTCGTGGACTCGTTTGTCGTGGTAGGGGAAAGCAATGGTGTTTGT TGCGCGTGTGGTTTTGCCTAAGATGTTGGATGTCGGCAAGGGACGTACAA GTATTTTTCCCGGGGTTTGTGCGACTAATGGTGTCTCGTGCGGGAGGGAC GGCTCACGCTTTTTTTTTCTTGGAAAAAAGTGTGTTTCCTTCCGTCCTCA CGCAATTCACGACGAATGTTTTGGTTTCTGAAAACAAGACTGGCTCATCT TCCTCGGCTACATCCTTTGCTCTGCAGCCACCTGCCACCGCCCTCGCCTA GAGTAGCGAACCTGAAAAAAGGCACCTACGTGATAGGCTGACATATATTT CTATCTTTGGAAACCACGCACGTGGGTTGACGCAACGGCACGCGAGGCTA GCCGCCCGCCGTAGTTGCAACATTGGCTCACTCCTTGGTTCCTGGAACCC CTCTGATCTTCTCGCCCTTCCCCTCCTCTCGAAAATAAACTCCGTCGGAA CCTACCAACGCGTCGCATGTTTGGTGCACGTGTAAGCTCATCGCGAGATC CTCATGGATATTACGGATGTCGACGGGGATCGAGAAGGAGGAGTGCGCAC GCTGCCGGTTATCATGGGCCGCAAGGCCGCCCTGGGACTCGCCGCGGTGC TCCTCTCGGCGGGGGTTGGAGCCGCCGGCGTCGGGGTTGTCGCGGGTGAG TGA
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig10691:77..4229-

>mRNA_H-canaliculatus_F_contig10691.663.1 ID=mRNA_H-canaliculatus_F_contig10691.663.1|Name=mRNA_H-canaliculatus_F_contig10691.663.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=1380bp|location=Sequence derived from alignment at H-canaliculatus_F_contig10691:77..4229- (Hapterophycus canaliculatus Oshoro5f female)
AAACCCGCCCCGCACCTCGGTGCGTACTGGAATATCCTTAGGCCGCACAA
CATCCCGTCCTCCTTTGGGCTCGTCGCGGCCGGAGCGCTGGTTTCCTCTC
ACGCCGTCGAGGCTCTCCTGGATCCCAAGAAACCCGCCCCGCACCTCGGT
GCGTACTGGAATATCCTTAGGCCGCACAACATCCCGTCCTCCTTTGGGCT
CGTCGCGGCCGGAGCGCTGGTTTCCTCTCACGCCGTCGAGGCTCTCCTGG
ATCCCAAGGTGCTCTTGACGGCGTTTGCGGCGGCGTCGGTCTCTGTCGGC
TCCTGCGTGCTCAACGACTGGTTCGACATCGAGCTCGACCGCGTCAACGA
TGTGCTCTTGACGGCGTTTGCGGCGGCGTCGGTCTCTGTCGGCTCCTGCG
TGCTCAACGACTGGTTCGACATCGAGCTCGACCGCGTCAACGATCCTGAG
AGGCCTCTGGTTACCGGAGAGGTCATGCCTGTCCACGCTCTTGGGATCGG
GATAGGTTTTCTGCTCGCGGCGGTGGTTAGTGCCTCGGCGGTGCACCCGG
CCGCGTTGCAGCCTGAGAGGCCTCTGGTTACCGGAGAGGTCATGCCTGTC
CACGCTCTTGGGATCGGGATAGGTTTTCTGCTCGCGGCGGTGGTTAGTGC
CTCGGCGGTGCACCCGGCCGCGTTGCAGGCGACCATCGTTGCCTCCGTGG
CGCTCACCTCGGCGTACACGCCGCTACTCAAGCCTATCCCGCTCATGAAG
AACTTCGTGGTCGCGATGGTCATCGCTGCCGCGGTCGCCGCCGGCGGTTT
GGCTGCGGGCGCCGGGGTCGCGGCCACTCTTACGCCGACGGTGCTCACAT
TTTTCGTCATCGGCGACCATCGTTGCCTCCGTGGCGCTCACCTCGGCGTA
CACGCCGCTACTCAAGCCTATCCCGCTCATGAAGAACTTCGTGGTCGCGA
TGGTCATCGCTGCCGCGGTCGCCGCCGGCGGTTTGGCTGCGGGCGCCGGG
GTCGCGGCCACTCTTACGCCGACGGTGCTCACATTTTTCGTCATCGCTCA
TCGCGAGATCCTCATGGATATTACGGATGTCGACGGGGATCGAGAAGGAG
GAGTGCGCACGCTGCCGGTTATCATGGGCCGCAAGGCCGCCCTGGGACTC
GCCGCGGTGCTCCTCTCGGCGGGGGTTGGAGCCGCCGGCGTCGGGGTTGT
CGCGGGTGAGTGACTCATCGCGAGATCCTCATGGATATTACGGATGTCGA
CGGGGATCGAGAAGGAGGAGTGCGCACGCTGCCGGTTATCATGGGCCGCA
AGGCCGCCCTGGGACTCGCCGCGGTGCTCCTCTCGGCGGGGGTTGGAGCC
GCCGGCGTCGGGGTTGTCGCGGGTGAGTGA
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