mRNA_H-canaliculatus_F_contig10691.664.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig10691.664.1
Unique NamemRNA_H-canaliculatus_F_contig10691.664.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig10691.664.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig10691contigH-canaliculatus_F_contig10691:1326..1833 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size508
Cds size342
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig10691.664.1prot_H-canaliculatus_F_contig10691.664.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig10691 1397..1738 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928730.2810495-UTR-H-canaliculatus_F_contig10691:1325..13961622928730.2810495-UTR-H-canaliculatus_F_contig10691:1325..1396Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig10691 1326..1396 +
1696845541.8156571-UTR-H-canaliculatus_F_contig10691:1325..13961696845541.8156571-UTR-H-canaliculatus_F_contig10691:1325..1396Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig10691 1326..1396 +
1622928730.310127-UTR-H-canaliculatus_F_contig10691:1738..18331622928730.310127-UTR-H-canaliculatus_F_contig10691:1738..1833Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig10691 1739..1833 +
1696845541.8341424-UTR-H-canaliculatus_F_contig10691:1738..18331696845541.8341424-UTR-H-canaliculatus_F_contig10691:1738..1833Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig10691 1739..1833 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928730.294982-CDS-H-canaliculatus_F_contig10691:1396..17381622928730.294982-CDS-H-canaliculatus_F_contig10691:1396..1738Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10691 1397..1738 +
1696845541.825012-CDS-H-canaliculatus_F_contig10691:1396..17381696845541.825012-CDS-H-canaliculatus_F_contig10691:1396..1738Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10691 1397..1738 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig10691.664.1

>prot_H-canaliculatus_F_contig10691.664.1 ID=prot_H-canaliculatus_F_contig10691.664.1|Name=mRNA_H-canaliculatus_F_contig10691.664.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=114bp
MGGRPVWGKIADLSLRLSFNAGLLEANAVVPVRLITITPHTSTANKACDP
VTVRKKTRPISVSLPLPKGPLSSRLGHAAPALLHGPQGVNKRGAQLRVPQ
SSPGTEHGRCGTL*
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mRNA from alignment at H-canaliculatus_F_contig10691:1326..1833+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig10691.664.1 ID=mRNA_H-canaliculatus_F_contig10691.664.1|Name=mRNA_H-canaliculatus_F_contig10691.664.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=508bp|location=Sequence derived from alignment at H-canaliculatus_F_contig10691:1326..1833+ (Hapterophycus canaliculatus Oshoro5f female)
ACAGGCATGACCTCTCCGGTAACCAGAGGCCTCTCAGGCTGGATAGCATC
GAGAGCGGGAGGAGGAAAGGCATGGGGGGCAGGCCTGTTTGGGGCAAAAT
AGCAGATCTAAGCTTGCGGCTATCGTTCAACGCTGGTTTGCTCGAGGCTA
ATGCCGTCGTGCCAGTAAGGCTTATAACGATTACGCCACATACGAGCACA
GCGAACAAGGCTTGTGATCCGGTCACCGTACGGAAGAAGACCAGGCCGAT
TTCGGTATCTCTCCCTTTGCCAAAAGGGCCGCTCTCAAGCCGGCTCGGCC
ATGCTGCTCCGGCCCTGTTGCACGGCCCGCAGGGCGTGAACAAAAGGGGC
GCTCAACTCCGCGTCCCTCAATCAAGCCCAGGGACAGAGCATGGCAGGTG
TGGGACGTTGTAGAAGAAGAGCGGCGCCCCCCACAAAATAAGTTCGATAG
TTCTCACGCAATCCGCCGTAGCCCGTAACTTTGGTTGTGTGGAAATAATC
GGATGACA
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig10691:1326..1833+

>mRNA_H-canaliculatus_F_contig10691.664.1 ID=mRNA_H-canaliculatus_F_contig10691.664.1|Name=mRNA_H-canaliculatus_F_contig10691.664.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=684bp|location=Sequence derived from alignment at H-canaliculatus_F_contig10691:1326..1833+ (Hapterophycus canaliculatus Oshoro5f female)
ATGGGGGGCAGGCCTGTTTGGGGCAAAATAGCAGATCTAAGCTTGCGGCT
ATCGTTCAACGCTGGTTTGCTCGAGGCTAATGCCGTCGTGCCAGTAAGGC
TTATAACGATTACGCCACATACGAGCACAGCGAACAAGGCTTGTGATCCG
GTCACCGTACGGAAGAAGACCAGGCCGATTTCGGTATCTCTCCCTTTGCC
AAAAGGGCCGCTCTCAAGCCGGCTCGGCCATGCTGCTCCGGCCCTGTTGC
ACGGCCCGCAGGGCGTGAACAAAAGGGGCGCTCAACTCCGCGTCCCTCAA
TCAAGCCCAGGGACAGAGCATGGCAGGTGTGGGACGTTGTAGATGGGGGG
CAGGCCTGTTTGGGGCAAAATAGCAGATCTAAGCTTGCGGCTATCGTTCA
ACGCTGGTTTGCTCGAGGCTAATGCCGTCGTGCCAGTAAGGCTTATAACG
ATTACGCCACATACGAGCACAGCGAACAAGGCTTGTGATCCGGTCACCGT
ACGGAAGAAGACCAGGCCGATTTCGGTATCTCTCCCTTTGCCAAAAGGGC
CGCTCTCAAGCCGGCTCGGCCATGCTGCTCCGGCCCTGTTGCACGGCCCG
CAGGGCGTGAACAAAAGGGGCGCTCAACTCCGCGTCCCTCAATCAAGCCC
AGGGACAGAGCATGGCAGGTGTGGGACGTTGTAG
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