mRNA_H-canaliculatus_F_contig1068.651.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig1068.651.1
Unique NamemRNA_H-canaliculatus_F_contig1068.651.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig1068.651.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig1068contigH-canaliculatus_F_contig1068:1256..1760 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size464
Cds size396
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig1068.651.1prot_H-canaliculatus_F_contig1068.651.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig1068 1324..1760 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928728.311456-UTR-H-canaliculatus_F_contig1068:1255..13231622928728.311456-UTR-H-canaliculatus_F_contig1068:1255..1323Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1068 1256..1323 +
1696845540.8100264-UTR-H-canaliculatus_F_contig1068:1255..13231696845540.8100264-UTR-H-canaliculatus_F_contig1068:1255..1323Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1068 1256..1323 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928728.3616672-CDS-H-canaliculatus_F_contig1068:1323..14331622928728.3616672-CDS-H-canaliculatus_F_contig1068:1323..1433Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1068 1324..1433 +
1696845540.8192558-CDS-H-canaliculatus_F_contig1068:1323..14331696845540.8192558-CDS-H-canaliculatus_F_contig1068:1323..1433Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1068 1324..1433 +
1622928728.3884854-CDS-H-canaliculatus_F_contig1068:1474..17601622928728.3884854-CDS-H-canaliculatus_F_contig1068:1474..1760Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1068 1475..1760 +
1696845540.828873-CDS-H-canaliculatus_F_contig1068:1474..17601696845540.828873-CDS-H-canaliculatus_F_contig1068:1474..1760Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1068 1475..1760 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig1068.651.1

>prot_H-canaliculatus_F_contig1068.651.1 ID=prot_H-canaliculatus_F_contig1068.651.1|Name=mRNA_H-canaliculatus_F_contig1068.651.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=132bp
MVLFLILRVKLSDDGALADLVLFRFHPFGGTKNTRTGYGQLVLPIFKGKR
IRTPRGREKIVAAQKQSNFTRMRWWCAGHVLSMWLWTIRRRCSSLTCRFC
STHRLPSKPKGTWLPTPLSLFFGHLPIARGP*
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mRNA from alignment at H-canaliculatus_F_contig1068:1256..1760+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig1068.651.1 ID=mRNA_H-canaliculatus_F_contig1068.651.1|Name=mRNA_H-canaliculatus_F_contig1068.651.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=505bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1068:1256..1760+ (Hapterophycus canaliculatus Oshoro5f female)
ACGAAGTTGCAGTAGCCTGCATGGAAATTCGAGCGGCCAGGCGTTGCATC
ACGTAACGGGGTAGATTGATGGTGCTGTTCCTGATTTTGAGGGTAAAGCT
GTCCGATGATGGTGCTCTGGCTGACCTCGTCTTATTCCGGTTTCATCCCT
TTGGCGGTACGAAGAACACTCGGACCGGGTTACGGCCAGGATTCGCCGTA
GCCTCTGAGGCACTGGGAGATACGGGCAATTGGTTCTGCCGATCTTCAAA
GGGAAAAGGATAAGGACACCCCGCGGTCGCGAAAAGATCGTCGCTGCGCA
AAAGCAATCGAACTTCACGAGAATGCGTTGGTGGTGCGCTGGCCATGTCT
TGTCGATGTGGCTGTGGACGATACGAAGGCGTTGTTCGTCGCTAACTTGT
CGTTTCTGCTCCACTCACCGGCTTCCCTCAAAACCCAAAGGAACCTGGCT
TCCAACGCCCTTGTCACTCTTCTTTGGACATCTTCCAATAGCTCGCGGTC
CTTGA
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig1068:1256..1760+

>mRNA_H-canaliculatus_F_contig1068.651.1 ID=mRNA_H-canaliculatus_F_contig1068.651.1|Name=mRNA_H-canaliculatus_F_contig1068.651.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=792bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1068:1256..1760+ (Hapterophycus canaliculatus Oshoro5f female)
ATGGTGCTGTTCCTGATTTTGAGGGTAAAGCTGTCCGATGATGGTGCTCT
GGCTGACCTCGTCTTATTCCGGTTTCATCCCTTTGGCGGTACGAAGAACA
CTCGGACCGGATGGTGCTGTTCCTGATTTTGAGGGTAAAGCTGTCCGATG
ATGGTGCTCTGGCTGACCTCGTCTTATTCCGGTTTCATCCCTTTGGCGGT
ACGAAGAACACTCGGACCGGATACGGGCAATTGGTTCTGCCGATCTTCAA
AGGGAAAAGGATAAGGACACCCCGCGGTCGCGAAAAGATCGTCGCTGCGC
AAAAGCAATCGAACTTCACGAGAATGCGTTGGTGGTGCGCTGGCCATGTC
TTGTCGATGTGGCTGTGGACGATACGAAGGCGTTGTTCGTCGCTAACTTG
TCGTTTCTGCTCCACTCACCGGCTTCCCTCAAAACCCAAAGGAACCTGGC
TTCCAACGCCCTTGTCACTCTTCTTTGGACATCTTCCAATAGCTCGCGGT
CCTTGAATACGGGCAATTGGTTCTGCCGATCTTCAAAGGGAAAAGGATAA
GGACACCCCGCGGTCGCGAAAAGATCGTCGCTGCGCAAAAGCAATCGAAC
TTCACGAGAATGCGTTGGTGGTGCGCTGGCCATGTCTTGTCGATGTGGCT
GTGGACGATACGAAGGCGTTGTTCGTCGCTAACTTGTCGTTTCTGCTCCA
CTCACCGGCTTCCCTCAAAACCCAAAGGAACCTGGCTTCCAACGCCCTTG
TCACTCTTCTTTGGACATCTTCCAATAGCTCGCGGTCCTTGA
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